LOC110490561 (LOC106576375)


Basic Information

Item Value
gene id LOC110490561
gene name LOC106576375
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62080971 ~ 62083812 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468722.2
TGCACATGGTCCAATTTTTAGCATGCAGGGACATTTTGCCCCTTATGATGCCCTCTAGTGGTTGTTGAGAGAAACACTCCTCAAGGATCTTCCTGGTGTAACTGCCATAGGCGTGGCTGTTGAAATGATGATTGTGGCAGTTACCTGAAAACAACAAGATTAAAGGACGCTGCTGGCGGCGTCTACTTTAATCTACAAAATAgGACGTGAGCAGAGGGACAGAACAGCTTAGGGACAGAAAACAAAATGGTGGAACACAGAAGAGAGCGACGCCGTGCCATTTCCCTCAGGGCTGGACCTAGTGAGGTGGACAATGTCACCCTGTCTGATGTGAATCTCAGGATCCATGCCTGGGCTGCCCGGACAACAGGTCGTCAGCTGGCAGAGATGGGTGACAGACTGGACCGTGAATGGGCAGAGAGACACCCTAATCAGTGGCCTGTGCCACAAACTCTCCATGTGACAAGTCCTGCCCATGCCCTGACTAGAAGCATCTACAGGGGGATACAAGGACAGCTTTGGGGAGTGAAGAGTTTGCCCGGCGTGGCCTCCGCTGTCCACAGGCAGGCTACACAGAGAGCAGAGGCTTGGGTTTCCAGTATTCAACCTGCTAACTGCCCTGGTTGGGCCAAAGCAATGCTTGCCACTGTGGCACTGGTGGCCACGGCAACCATTTGCACTGCATTGTGGAAGGAGTAGAAAGGCTAACCATTGCACTGAGGGGGGCCTTGGCTGGACTTCTAGCTACAATGTTCTGTGTTGGACAATTTCCTAATTGAGtgatatttttaaacattttttactaTAGACTTTAAGAAAAAAGAAATACCGTGTGTGTTATTGAATTGATTGTGCTGGATCACAGTTTTTATAGTCTTATCAACTAATGTATGTTTTAAATACTGTTGCTGGTCTGCAGTTTTTTCTATGAAGATTAAGCCTGTTACTGGTTAGACATTTAATTGCCACAACTATCTTACACCATTAAATGGACACTGGGaaatgattttttaatgacttgAGAAAAAATTTAACTTGAGAAAAACCAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106576375

GO:

id name namespace
GO:0043280 positive regulation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:0043065 positive regulation of apoptotic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468722.2 True 1050 mRNA 0.46 7 62080971 62083812

Neighbor

gene id symbol gene type direction distance location
LOC110490558 NA coding downstream 18448 62058610 ~ 62062523 (-)
LOC110490536 NA coding downstream 219710 61850367 ~ 61861261 (-)
LOC110490521 LOC106576387 coding downstream 238882 61836836 ~ 61842089 (-)
LOC110490520 zn12 coding downstream 258313 61804053 ~ 61822658 (-)
LOC110490525 LOC106576390 coding downstream 282474 61791810 ~ 61798497 (-)
LOC118938820 NA coding upstream 42726 62126538 ~ 62130465 (-)
LOC118938821 NA coding upstream 45664 62129476 ~ 62129665 (-)
LOC110490564 LOC106609562 coding upstream 81908 62165720 ~ 62169335 (-)
LOC110490568 LOC106609566 coding upstream 551826 62633205 ~ 62712367 (-)
LOC110490570 LOC106609586 coding upstream 645412 62729224 ~ 62740135 (-)
G1316052 LOC106609550 non-coding downstream 38421 62040640 ~ 62042550 (-)
G1315582 NA non-coding downstream 45494 62035061 ~ 62035477 (-)
G1315579 NA non-coding downstream 48814 62031945 ~ 62032157 (-)
G1315578 NA non-coding downstream 49482 62031133 ~ 62031489 (-)
G1316122 NA non-coding upstream 46809 62130621 ~ 62132344 (-)
G1316145 NA non-coding upstream 107352 62191164 ~ 62191587 (-)
G1316142 NA non-coding upstream 138002 62221814 ~ 62224615 (-)
G1316174 NA non-coding upstream 166381 62250193 ~ 62250404 (-)
G1316178 NA non-coding upstream 173286 62257098 ~ 62264093 (-)
G1316051 LOC106609550 other downstream 24948 62042770 ~ 62056023 (-)
G1315518 NA other downstream 107276 61874995 ~ 62006707 (-)
G1315519 NA other downstream 189550 61865030 ~ 61891421 (-)
G1315509 NA other downstream 244765 61834626 ~ 61836573 (-)
G1315398 LOC106609523 other downstream 468855 61610420 ~ 61612116 (-)
G1316323 NA other upstream 450476 62534288 ~ 62537470 (-)
LOC110490571 LOC106596632 other upstream 671870 62754956 ~ 62767499 (-)
G1316451 NA other upstream 819047 62902859 ~ 62904682 (-)
G1316904 LOC106609576 other upstream 1202695 63256527 ~ 63287904 (-)

Expression


Co-expression Network