XLOC_031633 (unga)


Basic Information

Item Value
gene id XLOC_031633
gene name unga
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 67351219 ~ 67365750 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061269
GCAGCTCTTCAAACGCTACTACGCGTGCACTCTCGACACTCGAGTGttgatttttaatgtttattgcgtTTAATTAATCGTTTTATTTGTGGAAATGATCGGACAGAAAAGCATCAAGTCATTTTTTTCGCCAGCGTCTAAGAAAAGGAATATTGACGAGATAAATACAGGGGAAACAAGAGATGATGTGAAGAAACAGAAGTTGGAAAGCGGAAATGAGGCACCCCTGAGTCCTGAGCAGTTGGAGCGCATCGCCAAAAACAAGAAGGCGGCTCTGGAGCGGCTTCAGAGTGCAGCTCCTGACGGGATTGGAGAGAGCTGGAGGAAAGCCCTCAGTGCTGAATTCGGGAAGAGCTACTTTAAATCATTGATGTCATTTGTTGGCGAAGAAAGGAAAAAGCACACAATCTATCCACCTCCACATGCAGTTTTCACCTGGACACAAACCTGTGACATTAAAGATGTCAAGGTTGTGATTCTCGGCCAGGATCCTTATCATGGACCTAACCAGGCTCATGGGCTTTGTTTCAGTGTTCAGAGACCTGTGCCCCCTCCACCAAGTTTGGTGAACATATTCAAAGAACTGGCTTCAGACATCGAAGGCTTTGTGCAGCCGGATCACGGAGATCTCACAGGATGGGCAAATCAAGGTGTCCTGCTGCTGAATGCTGTGCTGACGGTTCGAGCACACCAGGCCAACTCTCATAAAGACAAGGGCTGGGAGACTTTCACAGATGCTGTGGTGCACTGGCTCAGCTCTAACATGCAGGGTCTTGTTTTCATTCTCTGGGGCTCTTACGCTCAGAAGAAGGGAGCTGCCATCAATAAGAAGCAGCACCATGTTCTGCAAGCAGTGCATCCGTCACCACTGTCTGCTCACCGTGGATTCTTCGGTTGTAAACATTTCTCAAAGGCCAATGAACTGCTCAAGAAGTCAGGGAAGAAGCCCATTGACTGGAAAGCTCTGTGATGGTTTTCCTTCATGGTTATACATGGAATGCAGTCTGTCCTGTTTCTGTTTTCATTTCCTGCTGAAATTTTCATACGTGCATTTcatcttgtttgtttgttgctcTTATGTTATTAACTCAAGAGtcagtttttttaatgtacaattgTTCATTTTACATCTACTTTTTGTGTGTTTACGCCTTCAGCTGTTACTGATAGCAGTTAAACATTTAGAACACTACTAACAACAGTAAATGTTTTCATGTTTATCACAATAAACTATTTTTCTACTGAA
>TCONS_00061270
CTGAGCAGTTGGAGCGCATCGCCAAAAACAAGAAGGCGGCTCTGGAGCGGCTTCAGAGTGCAGCTCCTGACGGGATTGGAGAGAGCTGGAGGAAAGCCCTCAGTGCTGAATTCGGGAAGAGCTACTTTAAATCAGTCAAGGTTGTGATTCTCGGCCAGGATCCTTATCATGGACCTAACCAGGCTCATGGGCTTTGTTTCAGTGTTCAGAGACCTGTGCCCCCTCCACCAAGTTTGGTGAACATATTCAAAGAACTGGCTTCAGACATCGAAGGCTTTGTGCAGCCGGATCACGGAGATCTCACAGGATGGGCAAATCAAGGTGTCCTGCTGCTGAATGCTGTGCTGACGGTTCGAGCACACCAGGCCAACTCTCATAAAGACAAGGGCTGGGAGACTTTCACAGA
>TCONS_00061271
tacTAGTTTCAACAACATGCATAAATGTCTCGTAAAATTATCGAGTGTCAGCTTTAATCTCAATGTTAGCGGCTAAATGCTTCGGTTGCGGCTACAAATGTTACTATTTTCTCACGTGACATTTTTTTTGGCGTAATGATACATTTTAAGCATTGCGTGACACATACCATGAAACAATGTTTGCAAGCTTAGCTTTCCTTAGCTTTTTGAATGCACAAATGCCACGAATAGTTTACAAACgaaaatgtaatttaacaaaatacacaaaaatatcgTCTCAGGTGAAGAAACAGAAGTTGGAAAGCGGAAATGAGGCACCCCTGAGTCCTGAGCAGTTGGAGCGCATCGCCAAAAACAAGAAGGCGGCTCTGGAGCGGCTTCAGAGTGCAGCTCCTGACGGGATTGGAGAGAGCTGGAGGAAAGCCCTCAGTGCTGAATTCGGGAAGAGCTACTTTAAATCATTGATGTCATTTGTTGGCGAAGAAAGGAAAAAGCACACAATCTATCCACCTCCACATGCAGTTTTCACCTGGACACAAACCTGTGACATTAAAGATGTCAAGGTTGTGATTCTCGGCCAGGATCCTTATCATGGACCTAACCAGGCTCATGGGCTTTGTTTCAGTGTTCAGAGACCTGTGCCCCCTCCACCAAG

Function

symbol description
unga Enables G/U mismatch-specific uracil-DNA glycosylase activity. Acts upstream of or within histone lysine methylation and regulation of nucleobase-containing compound metabolic process. Predicted to be active in mitochondrion and nucleus. Is expressed in blastomere; oocyte stage I; and oocyte stage II. Human ortholog(s) of this gene implicated in dysgammaglobulinemia and immunodeficiency with hyper IgM type 5. Orthologous to human UNG (uracil DNA glycosylase).

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0051568 histone H3-K4 methylation biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0097510 base-excision repair, AP site formation via deaminated base removal biological_process
GO:0044030 regulation of DNA methylation biological_process
GO:0006281 DNA repair biological_process
GO:0006284 base-excision repair biological_process
GO:0070734 histone H3-K27 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004844 uracil DNA N-glycosylase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds molecular_function
GO:0043739 G/U mismatch-specific uracil-DNA glycosylase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-900 Enables G/U mismatch-specific uracil-DNA glycosylase activity. Acts upstream of or within histone lysine methylation and regulation of nucleobase-containing compound metabolic process. Predicted to be active in mitochondrion and nucleus. Is expressed in blastomere; oocyte stage I; and oocyte stage II. Human ortholog(s) of this gene implicated in dysgammaglobulinemia and immunodeficiency with hyper IgM type 5. Orthologous to human UNG (uracil DNA glycosylase).

Ensembl:

ensembl_id ENSDARG00000042527

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061269 False 1246 mRNA 0.44 7 67351219 67365750
TCONS_00061270 False 406 mRNA 0.52 4 67353213 67365006
TCONS_00061271 True 655 mRNA 0.43 3 67360665 67365333

Neighbor

gene id symbol gene type direction distance location
XLOC_031632 mlxip coding downstream 1303 67315816 ~ 67349916 (-)
XLOC_031631 rsrc2 coding downstream 58529 67275888 ~ 67292690 (-)
XLOC_031630 zcchc8 coding downstream 83512 67250959 ~ 67267707 (-)
XLOC_031629 clip1a coding downstream 109586 67188245 ~ 67241633 (-)
XLOC_031628 cdca5 coding downstream 170419 67175283 ~ 67180800 (-)
XLOC_031634 si:dkey-251i10.2 coding upstream 97277 67463027 ~ 67471375 (-)
XLOC_031635 UTP14C coding upstream 108369 67474119 ~ 67499279 (-)
XLOC_031636 zbtb20 coding upstream 167430 67533180 ~ 67661102 (-)
XLOC_031637 arhgap31 coding upstream 305457 67671207 ~ 67721368 (-)
XLOC_031638 b4galt4 coding upstream 371072 67736822 ~ 67762434 (-)
XLOC_031627 BX897741.1 non-coding downstream 186800 67161442 ~ 67164419 (-)
XLOC_031620 CU929288.1 non-coding downstream 813885 66537217 ~ 66537334 (-)
XLOC_031616 NA non-coding downstream 1107087 66239915 ~ 66244132 (-)
XLOC_031612 NA non-coding downstream 1326275 66022664 ~ 66024944 (-)
XLOC_031608 NA non-coding downstream 1676584 65670605 ~ 65674635 (-)
XLOC_031644 NA non-coding upstream 598757 67964507 ~ 67972342 (-)
XLOC_031650 CABZ01083943.1 non-coding upstream 840202 68205952 ~ 68214334 (-)
XLOC_031655 LO017735.1 non-coding upstream 1252208 68617958 ~ 68618089 (-)
XLOC_031656 NA non-coding upstream 1256348 68622098 ~ 68668542 (-)
XLOC_031659 NA non-coding upstream 1448173 68813923 ~ 68816110 (-)

Expression


Co-expression Network