LOC110490570 (LOC106609586)


Basic Information

Item Value
gene id LOC110490570
gene name LOC106609586
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62729224 ~ 62740135 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021563997.2
GGAAAGGGAGGTACTTGTACTGTAAACAATGGATGTGTCATATATCGAAGTGGATATTTCCTTTCAGTAAGCTACAGCTGGGATACCATATACCATATATTGAGATGAATTAAACATGTATTCGATATATAATGATAGCTATCTATCCATAAATTGCTGTTTGTATATACGGTTTAGGTTTGTATTAACGTTACCCAACAAAGTACCCCCCACCGCTACTGAACGGTTTAGCCCAAATCGAACCGCAAGCCAGCTGTGGTCTTGGACCTTTAAAAATACTAAAGTGCCGTCAGCTAATTAGACTCAACCTCCTTTACAAACGACTCTTTTGGTGTATAACCTAGTCTCCCACAGCGGAGACGTAAAAAAGCGCTATCCCACCATGCCTGGGAATGATGAGCGGCCCACCTCCATGTCCACCACTGTTAGCGAGGATGCCAGCAGCGACGCTGAGTCGTCATCGGACCGCTGTAACAGCATCACGTCTGCCAGCGACTTTGACTGCTCCCGCCAAAGCTTCACCAGTGACTGCTCCAGCAGCAAGCACAGCTCGCCCTCATCCAGCCCGCCCAAAACTATAACACTGGATGATGTCATTTCTTCTGCCCGGGACCTGTCCAACCTGACCCTGGCCCACGAGATCATTGTCAACCGTGACTTCCATGTGGAGCAGCCCCACCTACCTCAGAACAGTTTGGAGAAGCAAGTCAAATATATAGTTCACAAGGCTTTCTGGGATGGCCTGGAGTCTGAGCTGAATGATGACCCACCAGAGTATGAGCACGCCATCAAACTGCtggaggagatcagagagATCCTGTTGTCGTTCCTGAGCCCGGGAGCCAATCGGCTACGGACTCAGATCCTGGAGGTGCTGGACATGTATCTGATTCGCCAGCAGGCGGACAAGGAAGCGGTGGACATACACGGCCTGGCCTCTTACATCATCACCATCATGGGCAAGCTGTGTGCCCCCGTCCGTGACGATGAGGTCAAGAAGCTCCGCGAGAGCCCCGACAATGTTGCGTCAATGTACAAGGAGATCTTCCGGGTGCTGGACCTGATGAAGATGGACATGGTGAACTTTACCATCCAGAGCCTGCGGCCCGATCTGCAGAGGCAGTCAGTGGAGTATGAGAGGGCCAAGTTCCAGAGCATCGTGGAGAAGACTCCCAGTGCATTGGACCATACCACTGAGTGGATCAAGTCCTCTCTGGAGGAAGTGCTTTTCTCCATGCCAACCGTGGAGCAGCCCAACGGCCATGGGAAGGTGGGGAAAGCCCTGCCAAGTCCCCTCCTGGTCTTCAACAGTGGATTCATCTGCCTCCTCACCTGGGACTACCACAAGAGCCCACTGCCTGAAACCCTGATGACAGACGAGGTGCGTCTGCGGGAGCTCCAGCGGAGGCTCCAGCTGCTAAAGGCCGTGGCCTCCGTGCTGCTCATTGTCTACAGCGCCATCGGAGGGCCCATCTCGGGGCTGCCCACACTGGCCGAGCGCCTCAAGAGGATGACTAGCGTGCTCCTGGAGGGCATGCACCTCCCGGACTTTAACCTGTCAGAGGCTCTGGGGAACGTCAGTGGTCAGATCTGCTGTGAGCTCAACAAGTCCCTGACTGAGAGGAACTACCCAGCCTTGCCCCCAGAACTCCAGGTCACACTCAAGGGCCAGATCACCAGCATCACCCAGGAAAACAACCCTATCCGCAGTCTTGTGGaGGGAAGGGTCCAGCAGTACTTCCGAGTGCTCCTCGCCACGCCCAACTCTCACGTGAATCCGCCCCCGACGCCCGGAGGCCTGGCCCTGATCCAACCGGAGCTCACCTCCTTGGCGGTCACCTTCGTCAGCCTGGTCAACTTCAACAAGCAGGTCTACAGCCCCTTCTACATGATGATCCTCAAGACCCTGCTCTTCAGTAACGCGGCGCCTCCACCGGCAGCCACCGCACCTCAGGACCCCAGCATACAGAACCCTGTGAACTCCAACTAGGACCGCCAACATACCTACCGAGCCAGGAGCAATACAAAGCTGGAGCTGACAACACCTTATTTGAAAAAGGGGTGAAGAAAGGAATGACTTAGCAGCTACCTAAATCCACCCCCCCAGTGCTCGTTCTGATTCCTTGAGGCTGCAATCGCCACGTTTCATAGACTTTATGACAAAAGGGAAAGGCCTATATATTTAGAATCATGTCGCCCATTTTTATAACGTTACATTTCATATGCTTTATGCTGTGCATAAAAATTGATCTATAACTGTTTGTTACACGTTGACAAATCCAGAACACAAAATGCTATATTATTCATTCTATTAGCTTATTCATTGAAGTGCCACCGTTTGAATAGAAATATAAAAAGTTTGTTTTTAACTTATGTCGGCTTGTGATAACTCGCCATTAAACTGGTTAGGGCTCGGGAAATGTCATCTTGATTGAAAACAAGAGACATGTTTTAATTGTTGCTTTCCAACATGTCGAAGACATGTTTAAATCACTTGAGCTAAATTAGGagacttaaaatatatatatatatatatatatatatatatatatattatatatattatattatatatatatataacttttttGGGGCGGGGGACCCTGATTAATTGATATGATTATGGAATCACTAAATCTGATGGattctgacctttgaccttttgGAGATAAATATAATGcatgttttattttgtgttaaCATTCGTTGGAAAATGTTTTGTATGTTAGACCTTGCATAGTATTCAATAATTTTGTTGGGTTGTTTGAATGTGTTGACTTAATgtagatttttgttttgttattttgtgtcAGTGGATTTATAAAGTTGCGTGCTTTATACCTTCAAGGTACCAGTATTAGTTGTCCTTCTATACCTATATTTCCCTAAAAGCTATCCAACAGCTGTATGTTTCTGGACATGTTATGTAATATCTTATCTTTTGGTTTAGAACTCAAGTCATGAGAGGTGCTGAAGGTGTTTTGAAATGTCTAAAACTTCCCACAATGGAACTTTTTGGCGCAGAATAAACATTGTATGTTGTTAGCTTTTAAAATTCActtgaataaatacatttttatcttCTCA

Function

NR:

description
T-complex protein 11-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021563997.2 True 3087 mRNA 0.47 10 62729224 62740135

Neighbor

gene id symbol gene type direction distance location
LOC110490568 LOC106609566 coding downstream 16857 62633205 ~ 62712367 (-)
LOC110490564 LOC106609562 coding downstream 559889 62165720 ~ 62169335 (-)
LOC118938820 NA coding downstream 598759 62126538 ~ 62130465 (-)
LOC118938821 NA coding downstream 599559 62129476 ~ 62129665 (-)
LOC110490561 LOC106576375 coding downstream 645412 62080971 ~ 62083812 (-)
LOC110490571 LOC106596632 coding upstream 14821 62754956 ~ 62767499 (-)
LOC110490778 fut9 coding upstream 34561 62774696 ~ 62776771 (-)
LOC118938823 NA coding upstream 79951 62820086 ~ 62821153 (-)
si:ch211-244b2.4 LOC106576452 coding upstream 81120 62821255 ~ 62841674 (-)
LOC110490574 LOC106609040 coding upstream 110005 62850140 ~ 62872750 (-)
G1316310 NA non-coding downstream 124116 62587042 ~ 62605108 (-)
G1316332 NA non-coding downstream 166435 62557286 ~ 62562789 (-)
G1316330 NA non-coding downstream 178206 62546863 ~ 62551018 (-)
G1316276 NA non-coding downstream 243825 62469883 ~ 62485399 (-)
G1316409 NA non-coding upstream 5467 62745602 ~ 62746507 (-)
G1316414 NA non-coding upstream 11554 62751689 ~ 62752024 (-)
G1316431 NA non-coding upstream 38014 62778149 ~ 62778350 (-)
G1316434 NA non-coding upstream 41009 62781144 ~ 62781591 (-)
G1316435 NA non-coding upstream 41592 62781727 ~ 62782221 (-)
G1316323 NA other downstream 191754 62534288 ~ 62537470 (-)
G1316178 NA other downstream 465194 62257098 ~ 62264093 (-)
G1316051 LOC106609550 other downstream 673201 62042770 ~ 62056023 (-)
G1315518 NA other downstream 755529 61874995 ~ 62006707 (-)
G1315519 NA other downstream 837803 61865030 ~ 61891421 (-)
G1316451 NA other upstream 162724 62902859 ~ 62904682 (-)
G1316904 LOC106609576 other upstream 546372 63256527 ~ 63287904 (-)
G1318092 NA other upstream 1342902 64083037 ~ 64083888 (-)
G1318164 LOC106576481 other upstream 1476369 64216504 ~ 64227675 (-)

Expression

LOC110490570(LOC106609586) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110490570(LOC106609586) Expression in each Bioproject

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LOC110490570(LOC106609586) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network