XLOC_031634 (si:dkey-251i10.2)


Basic Information

Item Value
gene id XLOC_031634
gene name si:dkey-251i10.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 67463027 ~ 67471375 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061272
GTAGCTATATATTAGTTTGTGTTGTATAGTCTTATTGCAAATGAGCTATTGAGGAGACGTGTAGCAGGAATGATGAAGACTGTGTTTTTTGGGGTTGTCGTACTACAATTTTTGGGATGCGTTCACTCCTATGGGACCGGGGCTCCTACTTCAGCTTGTGGGGATATGATTCCGAGACACGGAGTACAACCGCAGCCAAACCCTGCTCCGTACACCATCCAGGCCAGCAGCACAAAGTTTCAGGCAGGGATACCCATAACAGTGGTTATCAAAGGTCCAGACTACAAAGGTGTGCTTCTGGAGGCTCGCTCTGGATCGGACACCACGGCATTAGGATCCTGGCAGATGCCTCCAGCCAACACTAAATTCTTAGAGTGTTCAGGAAACAAGCAAGGTGCAATCACTCATTCCAACGCTAACGTTAAAAACAACTCCACCGTCTACACCTGGGTTCCACCTGCGACCACAAAAAACATCATGTTCATGGCCACTGTAGTCCAGCAGCGCAATGTATTCTGGGTAAACGTGATGTCATCAAGTCTGACCCCGAGTGGAGGAGGAACGGCACTGGATGTAAACAGTGGCGCTGAAAGGATCATCACTCCTGCCCTGATAATGCTTATTTTCCCGCTGGCAGTTTTAACTGTATAGCTGCTCAATAATCCAGACTGATTAGATTATACTAGCTCAGTTACTCCTTGTGAAATATTTAATCACTCACTAGCAATTAAATATTTAGACAGTTTGTTTTTCCTGACTAATatttagagcacaggtgtcaagcTCTGCATAGGCCAcggctctgcatagtttagttccaac

Function

symbol description
si:dkey-251i10.2 Is expressed in epidermis; neural crest; and pigment cell. Orthologous to human REELD1 (reeler domain containing 1).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050506-102 Is expressed in epidermis; neural crest; and pigment cell. Orthologous to human REELD1 (reeler domain containing 1).

Ensembl:

ensembl_id ENSDARG00000093957

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061272 True 822 mRNA 0.46 5 67463027 67471375

Neighbor

gene id symbol gene type direction distance location
XLOC_031633 unga coding downstream 97277 67351219 ~ 67365750 (-)
XLOC_031632 mlxip coding downstream 113111 67315816 ~ 67349916 (-)
XLOC_031631 rsrc2 coding downstream 170337 67275888 ~ 67292690 (-)
XLOC_031630 zcchc8 coding downstream 195320 67250959 ~ 67267707 (-)
XLOC_031629 clip1a coding downstream 221394 67188245 ~ 67241633 (-)
XLOC_031635 UTP14C coding upstream 2744 67474119 ~ 67499279 (-)
XLOC_031636 zbtb20 coding upstream 61805 67533180 ~ 67661102 (-)
XLOC_031637 arhgap31 coding upstream 199832 67671207 ~ 67721368 (-)
XLOC_031638 b4galt4 coding upstream 265447 67736822 ~ 67762434 (-)
XLOC_031639 casr coding upstream 296787 67768162 ~ 67783593 (-)
XLOC_031627 BX897741.1 non-coding downstream 298608 67161442 ~ 67164419 (-)
XLOC_031620 CU929288.1 non-coding downstream 925693 66537217 ~ 66537334 (-)
XLOC_031616 NA non-coding downstream 1218895 66239915 ~ 66244132 (-)
XLOC_031612 NA non-coding downstream 1438083 66022664 ~ 66024944 (-)
XLOC_031608 NA non-coding downstream 1788392 65670605 ~ 65674635 (-)
XLOC_031644 NA non-coding upstream 493132 67964507 ~ 67972342 (-)
XLOC_031650 CABZ01083943.1 non-coding upstream 734577 68205952 ~ 68214334 (-)
XLOC_031655 LO017735.1 non-coding upstream 1146583 68617958 ~ 68618089 (-)
XLOC_031656 NA non-coding upstream 1150723 68622098 ~ 68668542 (-)
XLOC_031659 NA non-coding upstream 1342548 68813923 ~ 68816110 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_06248905_06250044 NA coding CI01000059 null 6248905 ~ 6250422 (-)