Gene
RNA
| Item | Value |
|---|---|
| gene id | depdc4 |
| gene name | LOC106609043 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 62786627 ~ 62792739 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: DEP domain-containing protein 4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021563995.2 | False | 3611 | mRNA | 0.48 | 9 | 62786627 | 62792739 |
| TU1501385 | True | 1010 | lncRNA | 0.34 | 1 | 62791704 | 62792713 |
62,782,000
62,783,000
62,784,000
62,785,000
62,786,000
62,787,000
62,788,000
62,789,000
62,790,000
62,791,000
62,792,000
62,793,000
62,794,000
62,795,000
62,796,000
62,797,000
NC_048579.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110490567 | anks1b | coding | upstream | 196895 | 62231272 ~ 62589732 (+) |
| LOC118938822 | NA | coding | upstream | 228793 | 62556129 ~ 62557834 (+) |
| LOC110490566 | LOC106609564 | coding | upstream | 563661 | 62171687 ~ 62224624 (+) |
| LOC110490565 | LOC106576370 | coding | upstream | 622140 | 62158298 ~ 62164487 (+) |
| LOC110490562 | LOC106576371 | coding | upstream | 631202 | 62139914 ~ 62155425 (+) |
| scyl2 | scyl2 | coding | downstream | 175 | 62792914 ~ 62816834 (+) |
| LOC110490575 | LOC106609039 | coding | downstream | 51397 | 62844136 ~ 62850292 (+) |
| impdh1b | LOC106576497 | coding | downstream | 505609 | 63298348 ~ 63327816 (+) |
| LOC110490585 | LOC106609575 | coding | downstream | 590476 | 63383215 ~ 63407684 (+) |
| LOC110490586 | LOC106609575 | coding | downstream | 590627 | 63383366 ~ 63385748 (+) |
| G1315984 | NA | non-coding | upstream | 3801 | 62782550 ~ 62782826 (+) |
| G1315983 | NA | non-coding | upstream | 5224 | 62781140 ~ 62781403 (+) |
| G1315978 | NA | non-coding | upstream | 9405 | 62776767 ~ 62777222 (+) |
| G1315961 | LOC106576450 | non-coding | upstream | 11646 | 62753629 ~ 62774981 (+) |
| G1315956 | NA | non-coding | upstream | 44677 | 62741617 ~ 62741950 (+) |
| G1315950 | NA | non-coding | downstream | 79590 | 62872329 ~ 62875053 (+) |
| G1316016 | NA | non-coding | downstream | 91060 | 62883799 ~ 62884010 (+) |
| G1315936 | NA | non-coding | downstream | 93786 | 62886525 ~ 62888350 (+) |
| G1316023 | NA | non-coding | downstream | 106187 | 62898926 ~ 62900273 (+) |
| G1316009 | NA | non-coding | downstream | 117098 | 62909837 ~ 62912541 (+) |
| G1315860 | NA | other | upstream | 171440 | 62614795 ~ 62615187 (+) |
| G1315679 | NA | other | upstream | 522611 | 62257134 ~ 62264016 (+) |
| G1315616 | NA | other | upstream | 639467 | 62100972 ~ 62147160 (+) |
| LOC110490560 | LOC106609558 | other | upstream | 705967 | 62077976 ~ 62080953 (+) |
| G1316007 | LOC100301653 | other | downstream | 128965 | 62921704 ~ 62932522 (+) |
| G1317320 | NA | other | downstream | 1021101 | 63813840 ~ 63814369 (+) |
| G1317674 | LOC106613263 | other | downstream | 1596867 | 64389606 ~ 64390097 (+) |
| G1317686 | LOC106576509 | other | downstream | 1614270 | 64407009 ~ 64410034 (+) |
