si:ch211-244b2.4 (LOC106576452)


Basic Information

Item Value
gene id si:ch211-244b2.4
gene name LOC106576452
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62821255 ~ 62841674 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944941.1
gcaaaaTAAAAAAGTTTGACAACCCCTGCTCCGTAAATTTCGATCTGTCCCTAATGTAAAATGATTGAGCAAGCTTCACTAGTTTGCGGGCTATTCAATGGAAAACGAAAGCTATAACTATTCTCCCATGGCGTCCAGCAGCGTAAATGacCCTAGTCAGGGGAACAGCTACCAGGAGAACTTCAGCTGCTCTGAGAGTAACTCTGAGAGCAGTGCTACAGAAGAGGAATCAGACAGTGATGCAGCAGGAACCCGACAGGATCAGGAAGAGCCTTGCCGGTACTACAACAGTGGTCACTGCCGGGATGGGAAAAGGTGCCACTACCTACACGTCTGCAAATACGCACTGAGAGGCAACTGTCGCTATGGAGCCAAGTGTCGCCTCAAGCACCTCAGCTCCTCCTCTGACAGTGATGGAGGTAGtgggaggagggaaaggaggaggtctttatctggagggagaagaggaggcggtgggagagaaaggaggaggtcTTCatctggagGGGCTCAGCGTGACATTAGCGGGCCATACAAATGGCAGTTGGAAGATGGACATGGCTGGAAGGACATAGCCAACGATCACATTTTGGAGGGACAGTACTCCCAACCCAACATTAAGGGCATCAATATCTACAACACCCCTTACGGcAAAGTGAGTATAGATTTCAAGGCGATGAGAGTCCGCGGTAAGAATAATCTGAGAGTGAGGCGTTTGGATGGTCAACAGACAGAGTGGATCTGGTTCTACTCTAGTAGCAAAGGCTGGACCAAGTATGGAGAAAAGGATTCCAAGGGAAACTCAGGCCCCATCCAGAGTTCTGAGATCGAGAAGAAATTCCAACTCAACCGTAACGGTTCTCTTACGTTCAACATCGGCTCTGATATCTTCGAGATCCGATTCAGACAAATGAGACAGGTGAGCggcaagaggaagaggaaagtTGTCCGTCGTCCAAAGTACCAACCACCTCAAAGCGGAAATCTAATTGGTCGAGTGACGTCTGCTTTCCAGAGAGTGAAGATGTCTCCAGCGGGCCAGAGTGAATCTCCAGAGTGGCAGTTTGGGGGGAAAAGTGGGCGCTGGCACACTTTCGAAAAGAGTGCTGACATTGAAGATCAGTACCAGAAGGACTTCAATGGATCCATGTCCCTCACTGTCAACAGACAGGCCTACAAGCTGGACTTCTCAGCCATGAAGCAAACCAACCAGTCTACAAGGGCGACGCGCAACATCAGGCGTGTCTAGAGAGCATGATGAACAACGCAACACTCCGACATCATCATTGCCTGTTTATTTTAGGGGAAGTAGAATTGTTGGGTTGCTATCACATGCAATATGTTTACATGCAATAACCTGCCATTAGCTCACAAACGGGAATACATGCCTATTGCAGAAACGGACTACAGATATTGGATATACTCCTGTACACACTGTGTATGAAACAACATGCACAATAACAAACTGTTTACctttttctctgtgtgttttgttgttgttgccccgCAAAAGCAACGTGCATTATCTgcaaatttggtaaaaaaaacatttgttctgTTGTAATGGCCTGGTGTAATATGTGATAATAAGGCATTTCGTTTCCTGACAAGAACAACCCAGTCAATCAGAATATGTCATGAAGTACCagaatatatcagaatatatcatGAAGTACCAGAAATTGCTGTATGTCTGGACAGAAACAGACTTTGAAGTCAGATTTGGCTGTTAAATATTTTAAGCAGATATTGCACTTTGCCTTTGTAGGGTATACATGTATGAGGAATGCTGTAGCAGACTGCCATGATCAAGTAACTGGGACATGTACATTAGATAACATTTGTGTGCATGATGTTGAAATGTAGGTCATACCTTTTATCTCAGGTGTTGTTCGAAAAGACGGAATATTCAAAGCCCTCGTTAAATAAGCCATATTATTTTAatttaatcatttatttgaatCAAGGGTCATAGCCAATGATGTATATACACATCATTGGTCATCTAGCTTGTGTTGATTTCTAACTTTACCCCTAGATTAGTTATATTTTTATTGGTGCAATAAATGGTTAGAAGAACTGTGAGTAAACAAATCCTGTTACGAACAGTTGAACAGTTTGACTTTTAGCAATGATGAATTGATTATGTTTTATGAAAATCAATGCAATACAATCTACAGTAATGTGGTAGTAACAATGTTGGAATAACACTGCGTTAAAATGTTCCTACAAATGGGCTGACGCTTGTCCTAGGTACCTTAATGTGATTGAAAGCTTAAACTGCCGTATTGTTACTGTACACAATGAATAAAGACAAAAACAGTGTATGTTTCCATGTAATAAGGTTTTGATTAAAAGCAGAATAAATTGCAATCATTTTATTTTGTGTTCTGGTAGTTTCCATGATTGTTCTTGGTTCTAATAAATCTGTGTTTCACCAAC
>XM_036944942.1
gcaaaaTAAAAAAGTTTGACAACCCCTGCTCCGTAAATTTCGATCTGTCCCTAATGTAAAATGATTGAGCAAGCTTCACTAGTTTGCGGGCTATTCAATGGAAAACGAAAGCTATAACTATTCTCCCATGGCGTCCAGCAGCGTAAATGacCCTAGTCAGGGGAACAGCTACCAGGAGAACTTCAGCTGCTCTGAGAGTAACTCTGAGAGCAGTGCTACAGAAGAGGAATCAGACAGTGATGCAGCAGGAACCCGACAGGATCAGGAAGAGCCTTGCCGGTACTACAACAGTGGTCACTGCCGGGATGGGAAAAGGTGCCACTACCTACACGTCTGCAAATACGCACTGAGAGGCAACTGTCGCTATGGAGCCAAGTGTCGCCTCAAGCACCTCAGCTCCTCCTCTGACAGTGATGGAGGGGCTCAGCGTGACATTAGCGGGCCATACAAATGGCAGTTGGAAGATGGACATGGCTGGAAGGACATAGCCAACGATCACATTTTGGAGGGACAGTACTCCCAACCCAACATTAAGGGCATCAATATCTACAACACCCCTTACGGcAAAGTGAGTATAGATTTCAAGGCGATGAGAGTCCGCGGTAAGAATAATCTGAGAGTGAGGCGTTTGGATGGTCAACAGACAGAGTGGATCTGGTTCTACTCTAGTAGCAAAGGCTGGACCAAGTATGGAGAAAAGGATTCCAAGGGAAACTCAGGCCCCATCCAGAGTTCTGAGATCGAGAAGAAATTCCAACTCAACCGTAACGGTTCTCTTACGTTCAACATCGGCTCTGATATCTTCGAGATCCGATTCAGACAAATGAGACAGGTGAGCggcaagaggaagaggaaagtTGTCCGTCGTCCAAAGTACCAACCACCTCAAAGCGGAAATCTAATTGGTCGAGTGACGTCTGCTTTCCAGAGAGTGAAGATGTCTCCAGCGGGCCAGAGTGAATCTCCAGAGTGGCAGTTTGGGGGGAAAAGTGGGCGCTGGCACACTTTCGAAAAGAGTGCTGACATTGAAGATCAGTACCAGAAGGACTTCAATGGATCCATGTCCCTCACTGTCAACAGACAGGCCTACAAGCTGGACTTCTCAGCCATGAAGCAAACCAACCAGTCTACAAGGGCGACGCGCAACATCAGGCGTGTCTAGAGAGCATGATGAACAACGCAACACTCCGACATCATCATTGCCTGTTTATTTTAGGGGAAGTAGAATTGTTGGGTTGCTATCACATGCAATATGTTTACATGCAATAACCTGCCATTAGCTCACAAACGGGAATACATGCCTATTGCAGAAACGGACTACAGATATTGGATATACTCCTGTACACACTGTGTATGAAACAACATGCACAATAACAAACTGTTTACctttttctctgtgtgttttgttgttgttgccccgCAAAAGCAACGTGCATTATCTgcaaatttggtaaaaaaaacatttgttctgTTGTAATGGCCTGGTGTAATATGTGATAATAAGGCATTTCGTTTCCTGACAAGAACAACCCAGTCAATCAGAATATGTCATGAAGTACCagaatatatcagaatatatcatGAAGTACCAGAAATTGCTGTATGTCTGGACAGAAACAGACTTTGAAGTCAGATTTGGCTGTTAAATATTTTAAGCAGATATTGCACTTTGCCTTTGTAGGGTATACATGTATGAGGAATGCTGTAGCAGACTGCCATGATCAAGTAACTGGGACATGTACATTAGATAACATTTGTGTGCATGATGTTGAAATGTAGGTCATACCTTTTATCTCAGGTGTTGTTCGAAAAGACGGAATATTCAAAGCCCTCGTTAAATAAGCCATATTATTTTAatttaatcatttatttgaatCAAGGGTCATAGCCAATGATGTATATACACATCATTGGTCATCTAGCTTGTGTTGATTTCTAACTTTACCCCTAGATTAGTTATATTTTTATTGGTGCAATAAATGGTTAGAAGAACTGTGAGTAAACAAATCCTGTTACGAACAGTTGAACAGTTTGACTTTTAGCAATGATGAATTGATTATGTTTTATGAAAATCAATGCAATACAATCTACAGTAATGTGGTAGTAACAATGTTGGAATAACACTGCGTTAAAATGTTCCTACAAATGGGCTGACGCTTGTCCTAGGTACCTTAATGTGATTGAAAGCTTAAACTGCCGTATTGTTACTGTACACAATGAATAAAGACAAAAACAGTGTATGTTTCCATGTAATAAGGTTTTGATTAAAAGCAGAATAAATTGCAATCATTTTATTTTGTGTTCTGGTAGTTTCCATGATTGTTCTTGGTTCTAATAAATCTGTGTTTCACCAAC

Function

NR:

description
poly [ADP-ribose] polymerase 12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944941.1 False 2442 mRNA 0.43 9 62821255 62841674
XM_036944942.1 True 2355 mRNA 0.42 9 62821255 62841674

Neighbor

gene id symbol gene type direction distance location
LOC118938823 NA coding downstream 102 62820086 ~ 62821153 (-)
LOC110490778 fut9 coding downstream 44484 62774696 ~ 62776771 (-)
LOC110490571 LOC106596632 coding downstream 54455 62754956 ~ 62767499 (-)
LOC110490570 LOC106609586 coding downstream 81120 62729224 ~ 62740135 (-)
LOC110490568 LOC106609566 coding downstream 108888 62633205 ~ 62712367 (-)
LOC110490574 LOC106609040 coding upstream 8466 62850140 ~ 62872750 (-)
LOC110490576 LOC106576462 coding upstream 33416 62875090 ~ 62882603 (-)
LOC110490577 lum coding upstream 45054 62886728 ~ 62890920 (-)
LOC118936239 LOC100301653 coding upstream 64290 62905964 ~ 62932588 (-)
LOC110490858 LOC106609036 coding upstream 139497 62981171 ~ 62985780 (-)
G1316442 NA non-coding downstream 29532 62791606 ~ 62791723 (-)
G1316436 NA non-coding downstream 38222 62782751 ~ 62783033 (-)
G1316435 NA non-coding downstream 39034 62781727 ~ 62782221 (-)
G1316434 NA non-coding downstream 39664 62781144 ~ 62781591 (-)
G1316431 NA non-coding downstream 42905 62778149 ~ 62778350 (-)
G1316483 NA non-coding upstream 40168 62881842 ~ 62882265 (-)
G1316504 NA non-coding upstream 97974 62939648 ~ 62939860 (-)
G1316509 LOC106562530 non-coding upstream 102491 62944165 ~ 62944562 (-)
G1316511 NA non-coding upstream 108967 62950641 ~ 62950909 (-)
G1316515 NA non-coding upstream 111406 62953080 ~ 62953343 (-)
G1316323 NA other downstream 283785 62534288 ~ 62537470 (-)
G1316178 NA other downstream 557225 62257098 ~ 62264093 (-)
G1316051 LOC106609550 other downstream 765232 62042770 ~ 62056023 (-)
G1315518 NA other downstream 847560 61874995 ~ 62006707 (-)
G1316451 NA other upstream 61185 62902859 ~ 62904682 (-)
G1316904 LOC106609576 other upstream 444833 63256527 ~ 63287904 (-)
G1318092 NA other upstream 1241363 64083037 ~ 64083888 (-)
G1318164 LOC106576481 other upstream 1374830 64216504 ~ 64227675 (-)
LOC110499867 LOC106576572 other upstream 1641153 64481916 ~ 64636502 (-)

Expression


Co-expression Network