LOC110490575 (LOC106609039)


Basic Information

Item Value
gene id LOC110490575
gene name LOC106609039
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62844136 ~ 62850292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564005.2
CCCGCTGCATATCTTACAGCTTTAGTAATCAAACGTTCTGATGTAGGCAGTGGCACTTGCGAATGTGAGGTGAGGAATGGTTGTATGTGGTACGTGTGCACAGTCTAAACTGTGGGTGGAAGCAATATGCCTAGATGTGACTAGTCTGCGGCCGGAAACCAACACGAAGAAGAAGAGACGAAGGGCGGAAGAGACGAAGTGCACTCCGTTGTGGTCCCTTCGCAGTGCTAGCTAACATGGATGCTACAATGGAAAACATCGAACACACGCTACCGCTATACTCTAATAATGCAAAAAAGAAAAGTAAAAAGAAAGTGAATTCAGAATACACGTACAAATtgtCTGAATATGAAACAATGGACTTTGTGAAATTGCGCGTATCAAATCGCTACATGTTTACGGGGAGGAGAAATGCCTCTCGACTGGCCTGGAGGGCCATCCTCAAACACATGGGCTTGCAGGGGAAGATGACGGCCAGTCAGGCAATGAAAAAATGGGAAAATCTGAAGAAGAGATACAAGGAGCTGAAGTACCCTCCCCCAGGGGTGCAGGTGTTCCCCCACAGTTGGCGTTGGTACGATCTGATGAGTGATGCAATGGAGGGGCGTCTGGCAGGCTCAGCCCCCATCATTGGCCCACTCCCCCCGGGCACTAGCGACAGTGATTTTCTCCCTGACGCCCGGCCCAGGAAGAGATCCATGATGGGCGGAATAGGGGTGATGGGGATGCACTGCGACCTGGATGAGATGGACACCGAGAGGGCGACGCTGGAGACCGAACGGGCGGCATTGGAGGGCGAGCGAGAGGTGATGGGGAGAGAGCGGATGGCGCTGGAGAGAGAGCAAGCAGGGCTGGAACGAGAGATGGCCAACCTGGACCGGGAGCGTGCCCaactggagagggagaaggcagcggtggagagggagagggggctgATAGAGAAGGAGAAAGCGCAGGTGGCCAGGGATCGGCTGGCtgtggacagagacagagttCTACTGGCGGAGGGTAGAGCAGCGGAGGAGAACGGTGCGGAaggacaaagctgtaaaacaggagGACAGAGGGTCGTTGGGTCGTTGGAAAGAACCGAGAGATTCCTCAAGATGTTTGAAAAGTTGGTTGAACGTATGTGAAGAACAATTATGTTTGTTTACACTAGAATAGAGTATTCAATTGGAAAGTAATTGGATATAATTTGTATTGGTTTTATTTTCTATGAATGTACAAAGTTTTCAATGACAAATCCTTTTTGTATTGCTGTTCAGAGATGCCTGTATGCCTATTGTTATCTGGGCTAGAAGTATTTGAACATGAACTGCCTAAACAGTTGTACTCAATCAGTTCATTCAAAATCACTTTGCAGCTACACACCTTACCGGTCAATTCTCAATTAAAATGTTAAGCCATTGAGGTCATCAAAACAACTTTATTCAATTGTGGTATTTCCATACAAAGCACACAATAGCAGGCTGTTTCTTCTTGTTAACCCCATCCACacccaacaaccccccccccccccccccccccctcccccttggtCATACAATAGTCTTGATCTTTATTGATATAGACTATTGTGGTCATAACAAGAACTTTGAAATGTAATATGCCAAATATTGCAGTTCATGTAAAAAAAGTGACTTcagaatatatttttatattacaGTACAGACTTTACAAATGCTTGTTTAATTGCTTCTTTTATTGCATTGATATTCAAATTGGCGTTCCAGTAAGCTTCAGCTTCAATTAGTTTATGCtagtatcattttttttttttttttaaatagtgttAGATTTCTGTAATATAATTTTTCTCctttacaaaaacatatttaaacaATATTACTGGTTGTCGTGGCCAGTTGTGAACAGACATGAAACAATGTTTGATTGTTGGATCAATAAAATGTCACATTTT

Function

NR:

description
uncharacterized protein LOC109878556

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564005.2 True 1924 mRNA 0.45 4 62844136 62850292

Neighbor

gene id symbol gene type direction distance location
scyl2 scyl2 coding upstream 27302 62792914 ~ 62816834 (+)
depdc4 LOC106609043 coding upstream 51397 62786627 ~ 62792739 (+)
LOC110490567 anks1b coding upstream 254404 62231272 ~ 62589732 (+)
LOC118938822 NA coding upstream 286302 62556129 ~ 62557834 (+)
LOC110490566 LOC106609564 coding upstream 621170 62171687 ~ 62224624 (+)
impdh1b LOC106576497 coding downstream 448056 63298348 ~ 63327816 (+)
LOC110490585 LOC106609575 coding downstream 532923 63383215 ~ 63407684 (+)
LOC110490586 LOC106609575 coding downstream 533074 63383366 ~ 63385748 (+)
LOC110490817 LOC106576481 coding downstream 1371792 64222084 ~ 64227831 (+)
pax4 LOC106576509 coding downstream 1555774 64406007 ~ 64408064 (+)
G1315984 NA non-coding upstream 61310 62782550 ~ 62782826 (+)
G1315983 NA non-coding upstream 62733 62781140 ~ 62781403 (+)
G1315978 NA non-coding upstream 66914 62776767 ~ 62777222 (+)
G1315961 LOC106576450 non-coding upstream 69155 62753629 ~ 62774981 (+)
G1315950 NA non-coding downstream 22037 62872329 ~ 62875053 (+)
G1316016 NA non-coding downstream 33507 62883799 ~ 62884010 (+)
G1315936 NA non-coding downstream 36233 62886525 ~ 62888350 (+)
G1316023 NA non-coding downstream 48634 62898926 ~ 62900273 (+)
G1316009 NA non-coding downstream 59545 62909837 ~ 62912541 (+)
G1315860 NA other upstream 228949 62614795 ~ 62615187 (+)
G1315679 NA other upstream 580120 62257134 ~ 62264016 (+)
G1315616 NA other upstream 696976 62100972 ~ 62147160 (+)
LOC110490560 LOC106609558 other upstream 763476 62077976 ~ 62080953 (+)
G1316007 LOC100301653 other downstream 71412 62921704 ~ 62932522 (+)
G1317320 NA other downstream 963548 63813840 ~ 63814369 (+)
G1317674 LOC106613263 other downstream 1539314 64389606 ~ 64390097 (+)
G1317686 LOC106576509 other downstream 1556717 64407009 ~ 64410034 (+)

Expression


Co-expression Network