LOC110490574 (LOC106609040)


Basic Information

Item Value
gene id LOC110490574
gene name LOC106609040
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62850140 ~ 62872750 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944943.1
TTGTGCAGTGCATGGACACGTTGGCTAATTGCTGATAGAGGTTTTGATATTCAATTTTTTTATTGCTTTGGGATTTGAACATCTATTCTTGGTTTGGATGTCTAGTGTCTGATCATATCaaGTGGACTATGAGGATGTTGGAGGGGCTCATATTAGGACTCTTCGTCCTCAACGCAGTGGTGGCCAACCCCAGATTTGCCCGGCAGGTGGAATTAGACATGTACGACAGCGCTAACTATGATGTGGATCTAGAAAACTTGAATTTGGAGAATCCGGATGTCCATGGTTATGAAGATGGACTGACTATTGACGAACCTCAGATAGAGATTGGCACACTGGCCCCACCAAATTATAACTACCCTGGTCCTGGGGGCCCTGCATcactggaggaggaagaggaggaggaggagttgccCCTAAGACCCCAGCTCATCCCCCAAGGCTCAGGGGGGTCTGGGGTACTCATGGGCCCAGACACACAGGGAGAGGAGGAGCTGCGCCTGAGTCCTATTGACATTCTTCATATCTCCGGGGACTTTGGGGGTTCCACGGGTTCTGGGGGTTCCGGTGGCTCTGGGGTTTCCGGAGGTTCTGGGGGTTCCGGAGACCTTTTGGCTTCCGGTTCTGGGGACCTTTTGGCTTCTGGAGGCTCAGGGGGTTCCATGGAAATTGGTTCAGCAGGTTCTGGGGGTTCCGGGTACCTTGGATCCGGAGGCTCTGTGGGTTCCGGGGACCTTGGATCCGGAGGCTCTGTGGGTTCCGGGGACCTTGGATCCGGAGACTCTGTGGGGTCCGGGGACCTTGGTTTTGGAGGCTCTGGGGGTTCTGGGGACCTTGGTTCTGGAGGCTCTGGGGGTTCCGGGGATCTTGGTTCCCTGGGCTCTGGAGGTTCCAGCACCCTCCTAGGCTCAGGGGGTTCCGGGGACATATTGGTTTCCAGTACTGGGGGTTCCGGAGGTTCTGGAGGTTCCGGGGACTCAGGAATAATAATTATATCTGGAGAGGAGGAGCTGCCCCTCATTCCTGACACTACCCCCCAGGAGGCATCGGGTGTTTCTGGGGAGTCCGGGGCCTTTGGCACCTCAGGGGTCTCAGGGCCTGGGGGCTCCGACTCTGGTGGGTCAGAGGTCACATTAATCCCTGACCCTGAAGAAGAGGAGGAAGTGCTCCTGACTACTCCGAAAACCCCTCAGGAGTCTGGAGGTACAGTAGGCTCAGGGGGCTCTGGGTTGCCAGAGGTTGACTTGGACATTAAAGgtATGCCTACTTGCCTGCTGTGCACCTGTCTGGGTGGTTCTGTCTACTGTGATGATGTGAAGCTGACGAGCGTGCCGCCTCTCCCCAAAGAGACCACTCACTTCTACGCCCGCTACAACCGCATCACCAAGATCAACAAGGGCGACTTCGCTCAGATGAACAAGCTGAAGAGGATCGACTTGACCGCCAACGAGATTGCATCCATCGCCGATGATGCGTTCTCCGGCCTGCCCGTGCTGGAGGAGCTGGTGCTCCGTGAGAACGGCGTGTCACAGCTTCCTGCCCTTCCGCCCGTGATGACCCTCATCGACGCCAGCCACAACAACATTGGCGCCACAGGCATCCACAAAGAGGCTTTCAAGGACATGACGGGTCTGCTGTACCTGTACCTAACAGACAACCACATCGACCACATCCCTGTGCCCCTACCGGACAGCCTGCGCTCTCTGCACCTACAGCGCAACAACATTCAGATGATACACGAGGACACGTTCTGCAACCTGAAAGACTTCAACTACATCAGGAACGCACTGGAGGACATTCGCCTGGACGGCAACCCCATCAACCTCAGCAGGACCCCACAGGCCTATGTGTGTCTGCCCCGCGTCCCCATCGGAGCCCACATCTAACCACACACTGATCAATACTCGTGAATACACAAGCATCCTTACACAGCTCAACATCTACGAGACATATGTACATACCATACACTCACTTACCTACGGAGACATCCTAAAAGTTGTCCAGTCTCAGTTCAATTGCAATCTGCACATACAGTAAACACCGGAACACAGTGTCTACCTATCTGGCCTAATTTAAGTCTGATCAGCTGTTGATTGCATACATAACACAGTGAGAGAGATGGTGTGTATCTCTCATTcctacacacaaatacacaccagaTAACTTTGTCAAAAGCCAAACTGTTCAGCAACTTGAAGCAAACAAAAAGACAATGAAAATGTGACATTTTATTGATCCAACAATCAAACATTGTTTCATGTCTGTTCACAACTGGCCACGACAACCAGTAATATtgtttaaatatgtttttgtaaagGAGAAAAATTATATTACAGAAATCTaacactatttaaaaaaaaaaaaaaaa
>XM_021564003.2
GTTCTCAGTGCCTACCTTCACACACACAAGGAAGGGCACACTGCTCTGGTCTGCCAgagcacacacacctacacacacccacactcacacacctatacacacctacacacacccacatatacacacctatacacacccaccctctctcttcccGGCACCCTGAGCAACCTCTTACCATTGGCCAGGTCCCCTAGCCCTCAGCATCTCCATCACGGCTGAAGGGACCATTCAAGAAAACAGGAGACAGAGGTGGACTATGAGGATGTTGGAGGGGCTCATATTAGGACTCTTCGTCCTCAACGCAGTGGTGGCCAACCCCAGATTTGCCCGGCAGGTGGAATTAGACATGTACGACAGCGCTAACTATGATGTGGATCTAGAAAACTTGAATTTGGAGAATCCGGATGTCCATGGTTATGAAGATGGACTGACTATTGACGAACCTCAGATAGAGATTGGCACACTGGCCCCACCAAATTATAACTACCCTGGTCCTGGGGGCCCTGCATcactggaggaggaagaggaggaggaggagttgccCCTAAGACCCCAGCTCATCCCCCAAGGCTCAGGGGGGTCTGGGGTACTCATGGGCCCAGACACACAGGGAGAGGAGGAGCTGCGCCTGAGTCCTATTGACATTCTTCATATCTCCGGGGACTTTGGGGGTTCCACGGGTTCTGGGGGTTCCGGTGGCTCTGGGGTTTCCGGAGGTTCTGGGGGTTCCGGAGACCTTTTGGCTTCCGGTTCTGGGGACCTTTTGGCTTCTGGAGGCTCAGGGGGTTCCATGGAAATTGGTTCAGCAGGTTCTGGGGGTTCCGGGTACCTTGGATCCGGAGGCTCTGTGGGTTCCGGGGACCTTGGATCCGGAGGCTCTGTGGGTTCCGGGGACCTTGGATCCGGAGACTCTGTGGGGTCCGGGGACCTTGGTTTTGGAGGCTCTGGGGGTTCTGGGGACCTTGGTTCTGGAGGCTCTGGGGGTTCCGGGGATCTTGGTTCCCTGGGCTCTGGAGGTTCCAGCACCCTCCTAGGCTCAGGGGGTTCCGGGGACATATTGGTTTCCAGTACTGGGGGTTCCGGAGGTTCTGGAGGTTCCGGGGACTCAGGAATAATAATTATATCTGGAGAGGAGGAGCTGCCCCTCATTCCTGACACTACCCCCCAGGAGGCATCGGGTGTTTCTGGGGAGTCCGGGGCCTTTGGCACCTCAGGGGTCTCAGGGCCTGGGGGCTCCGACTCTGGTGGGTCAGAGGTCACATTAATCCCTGACCCTGAAGAAGAGGAGGAAGTGCTCCTGACTACTCCGAAAACCCCTCAGGAGTCTGGAGGTACAGTAGGCTCAGGGGGCTCTGGGTTGCCAGAGGTTGACTTGGACATTAAAGgtATGCCTACTTGCCTGCTGTGCACCTGTCTGGGTGGTTCTGTCTACTGTGATGATGTGAAGCTGACGAGCGTGCCGCCTCTCCCCAAAGAGACCACTCACTTCTACGCCCGCTACAACCGCATCACCAAGATCAACAAGGGCGACTTCGCTCAGATGAACAAGCTGAAGAGGATCGACTTGACCGCCAACGAGATTGCATCCATCGCCGATGATGCGTTCTCCGGCCTGCCCGTGCTGGAGGAGCTGGTGCTCCGTGAGAACGGCGTGTCACAGCTTCCTGCCCTTCCGCCCGTGATGACCCTCATCGACGCCAGCCACAACAACATTGGCGCCACAGGCATCCACAAAGAGGCTTTCAAGGACATGACGGGTCTGCTGTACCTGTACCTAACAGACAACCACATCGACCACATCCCTGTGCCCCTACCGGACAGCCTGCGCTCTCTGCACCTACAGCGCAACAACATTCAGATGATACACGAGGACACGTTCTGCAACCTGAAAGACTTCAACTACATCAGGAACGCACTGGAGGACATTCGCCTGGACGGCAACCCCATCAACCTCAGCAGGACCCCACAGGCCTATGTGTGTCTGCCCCGCGTCCCCATCGGAGCCCACATCTAACCACACACTGATCAATACTCGTGAATACACAAGCATCCTTACACAGCTCAACATCTACGAGACATATGTACATACCATACACTCACTTACCTACGGAGACATCCTAAAAGTTGTCCAGTCTCAGTTCAATTGCAATCTGCACATACAGTAAACACCGGAACACAGTGTCTACCTATCTGGCCTAATTTAAGTCTGATCAGCTGTTGATTGCATACATAACACAGTGAGAGAGATGGTGTGTATCTCTCATTcctacacacaaatacacaccagaTAACTTTGTCAAAAGCCAAACTGTTCAGCAACTTGAAGCAAACAAAAAGACAATGAAAATGTGACATTTTATTGATCCAACAATCAAACATTGTTTCATGTCTGTTCACAACTGGCCACGACAACCAGTAATATtgtttaaatatgtttttgtaaagGAGAAAAATTATATTACAGAAATCTaacactatttaaaaaaaaaaaaaaaa

Function

NR:

description
leucine-rich repeat protein soc-2 homolog

GO: NA

KEGG:

id description
K08127 EPYC, DSPG3; epiphycan

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944943.1 False 2368 mRNA 0.52 10 62850140 62872394
XM_021564003.2 True 2496 mRNA 0.53 10 62850140 62872750

Neighbor

gene id symbol gene type direction distance location
si:ch211-244b2.4 LOC106576452 coding downstream 8466 62821255 ~ 62841674 (-)
LOC118938823 NA coding downstream 28987 62820086 ~ 62821153 (-)
LOC110490778 fut9 coding downstream 73369 62774696 ~ 62776771 (-)
LOC110490571 LOC106596632 coding downstream 83340 62754956 ~ 62767499 (-)
LOC110490570 LOC106609586 coding downstream 110005 62729224 ~ 62740135 (-)
LOC110490576 LOC106576462 coding upstream 2340 62875090 ~ 62882603 (-)
LOC110490577 lum coding upstream 13978 62886728 ~ 62890920 (-)
LOC118936239 LOC100301653 coding upstream 33214 62905964 ~ 62932588 (-)
LOC110490858 LOC106609036 coding upstream 108421 62981171 ~ 62985780 (-)
LOC110490579 LOC106576460 coding upstream 258600 63131350 ~ 63136329 (-)
G1316442 NA non-coding downstream 58417 62791606 ~ 62791723 (-)
G1316436 NA non-coding downstream 67107 62782751 ~ 62783033 (-)
G1316435 NA non-coding downstream 67919 62781727 ~ 62782221 (-)
G1316434 NA non-coding downstream 68549 62781144 ~ 62781591 (-)
G1316431 NA non-coding downstream 71790 62778149 ~ 62778350 (-)
G1316483 NA non-coding upstream 9092 62881842 ~ 62882265 (-)
G1316504 NA non-coding upstream 66898 62939648 ~ 62939860 (-)
G1316509 LOC106562530 non-coding upstream 71415 62944165 ~ 62944562 (-)
G1316511 NA non-coding upstream 77891 62950641 ~ 62950909 (-)
G1316515 NA non-coding upstream 80330 62953080 ~ 62953343 (-)
G1316323 NA other downstream 312670 62534288 ~ 62537470 (-)
G1316178 NA other downstream 586110 62257098 ~ 62264093 (-)
G1316051 LOC106609550 other downstream 794117 62042770 ~ 62056023 (-)
G1315518 NA other downstream 876445 61874995 ~ 62006707 (-)
G1316451 NA other upstream 30109 62902859 ~ 62904682 (-)
G1316904 LOC106609576 other upstream 413757 63256527 ~ 63287904 (-)
G1318092 NA other upstream 1210287 64083037 ~ 64083888 (-)
G1318164 LOC106576481 other upstream 1343754 64216504 ~ 64227675 (-)
LOC110499867 LOC106576572 other upstream 1610077 64481916 ~ 64636502 (-)

Expression


Co-expression Network