LOC110490577 (lum)


Basic Information

Item Value
gene id LOC110490577
gene name lum
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62886728 ~ 62890920 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564007.2
TGTCCTTTGTGAGGCTTCGCATCCTCATTCACACACGAGGCGAACCTTGTATCTCAGACTGCACTGGTGCACCTGTGACTGGTTAGGCAGAGCCCATAATTCTCAGATTCCATGCCTTAAAAACTCATGTCGATGCCATCGTCTTTGTATACTAGAGTGTGACTTCAGTTTGGGCAGCTGCCTTCTGTCAATCCGGGACCACAGTCATCTGAAGAAGCAGAAGCTTTCCCACtcctttccctcgctctctctttctctcactctctttatctccccctccctctccctttccccctttccctcgctctctctttctctcactctctttatctccccctccctctccctttctccctcgttctcctccctctctccagagaCATCTGGCTTTTGAGCAACCACAGTCTTCTTACCTGCTGACCTTCTATCCcacacgcagagggagagagagagagagaggagagaaagTACAGTTATGTTTCCCCTCCGTGTCCCCATCTTTGCCGTGCTGGTAAGCCTGACCGTGGGTCAGTACGATGACTACGACTACCAGCCGGCCTCCCAGTATGGCCCGTCCAGCGCCAACTGTGCCCAGGAATGCGAGTGCCCCATCAACTTCCCCACTGCCATGTACTGTGACTCCCGCAACCTTAAGTTTGTGCCCATTGTGCCCTCAGGCATCAAGTACCTGTACCTGCAGAACAATCTGATCGAGGAGATCAAGGCTGGGGTCTTCGACAACGTCACGGCTGAACTCCGTTGGCTGGTCCTGGACCATAACCAGATCACCAATGAGAAGGTGGCCAAGGGAACCATCGACAAGCTGACCGGACTTCATAAGATCTTGTTCAGCTTCAACAAACTGACGGAAGCTGTgatccctccctccatgtctttgGACGAGCTGAAGATGATGAACAACCAGCTGTCCAAGTTCCCCGCAGGGAGTCTGGCCGGCATGCAGAACCTGACCTCAGTCCACCTCCAGAACAACGAGTTGACCTCTAAAGCTCTTAACGGGGTCTTCAAGGGCCTCAACAAGCTGGTGGCCATAGACTTGACCAACAACAAGCTGAAGAAGCTGCCCTCAGGCATGCCCAGTTCGCTGGAGACCTTCTATGGCGATCACAATGGCATCAGCAGCATCGCCGCCGGGGACCTCAAAGAGCTGCCCAAGCTGGCGTACCTGAGGTTGGCCTACAATCAGATGACGGATGCAGGGATTCCGGCGGGCGTGTTCAATGTGACGAGCCTGATCGAGCTGGATCTGTCCTACAACAAGCTGCAGTCCATCCCTGAGATCAACGAACAGCTGGAGCATCTCTATCTGCAGGTCAACGAAATCAACAAGTTCAACCTGGAGAATATTTGCAAGTTCTCTGGCCCTCTGAACTACTCCAGACTGAAGCACCTGCGTCTGGATGGGAACAACATCACACATGCCGACCTACCCCATGACTCCTCCAACTGCCTGCGCCAAGCCTCTGACATCATCTTCGACTAAGGACCCTCCCCTCATCCGCAAGTCTCCCTCTGTGACCCTCCCCCGGCACCACGACCTACCCTAAACTAATCCTTCAAACCCCAATAGACACAATGTGGCTATTTTCCAATATCTACAATAGCATACTACTCAGAGTATACGGCCAATATGTTTCTTTATTCTAAGTGGAATGCTGGTGTGGATAATGAACCCGAGCGACAGTGTTTGCAACAACCCTAAATATGTATCCTCCCCCTACCGGCGAAATCGAGGTCACCTCTGTCAACTCATCGGTAGTCCTTTCTGTAAACacagactatgaaataacaaaccAACAAAGGTTAGAAACCCCGGAGAGACCTTTATTTTGCAGTGCATCATGGTATTCTCATGACAACCATAGGGTATTTTGGCCGTAGCAAATGGCTGGCCCTGTACTAATAGTTTTACCCAAATTTGCGGCAAATCAAACAATCGGCCACAATATAATGTAATGGTGCCTCGTAAAAAGCACTTGAACTGTACTTGTctttacttgtttaaaaaaaaaggtgcCTGTTCTTGTGCAAAAGAGACAATATAGGAACATAGGGATTCCTGAATGAAGTGATTTTAATGAAAAAGCATCTCACACACTTCAAACATTCCAAAAGTAGTGGCACATGTTGTTTTCAGACAAGTACATTGAGGAATATGGGAATAAATCTCACTTGCAAATAAATGCATTGCCCATTCCTCTTTTGTATGTTTGtcatgatgtttttttaaaggtttCTTGTATTTAGTCAGTACACTCCCAGAATCACATTGCTGTGCAAAAGACCTGCAGGTAAGGAATAAAAGTATCTAAgagagctgtgttgtgtactctGGTGTAATGTCTACTGGGGAAACATTGAACAGTGGAACACTTTTGGAACCAAATTAAAACTCATATGTCATATGTCAAAAGCTGTGGCATATTCCCCACCTTTCTGTATGAATGTTGTGGGGAAAGTTATTAACCATCCTTATCGACAAGATTAAAAGGCTTGACACTGAATAGCTCTGCTGAAGTAATTTACTGTTTTTTTAATGAGTTATCATGCAGTTAAATAAGAGTCAATCGCCCGTTCATTGCAGATCACCGTTGTTATGCCGACATTTATACAACATTTGCATTGCTTGCATGCATCTCATGGTAACTCTGTATGATAATAAAAGCTAGCATTTGACGTTTTTATCCATTCATGGTTACCTTGTTTGCCATGTTTCATGTGTGCTTTTGCCCGTATAGCTTTATCAGAATAGCAACAATTTGTTGTGACGCTAACTTTATCTTGCTCTGTTGTGGCAACGTTGGTGGAATGTCATGTGCTATTTGGGCAGAGTATATCCCGATTTATTTTCATTATGGCTTTTGACTCAGTAATCGCTGGTGAATTTACTGTGAGGACATAACATACATTTGAATAAACTACATTTCCAATA
>XM_021564008.2
GAAAAATTACAGATATATATGATGCCATGTGTCCTTTGTGAGGCTTCGCATCCTCATTCACACACGAGGCGAACCTTGTATCTCAGACTGCACTGGTGCACCTGTGACTGGTTAGGCAGAGCCCATAATTCTCAGATTCCATGCCTTAAAAACTCATGTCGATGCCATCGTCTTTGTATACTAGAGTGTGACTTCAGTTTGGGCAGCTGCCTTCTGTCAATCCGGGACCACAGTCATCTGAAGAAGCAGAAGCTTTCCCACtcctttccctcgctctctctttctctcactctctttatctccccctccctctccctttccccctttccctcgctctctctttctctcactctctttatctccccctccctctccctttctccctcgttctcctccctctctccagagaCATCTGGCTTTTGAGCAACCACAGTCTTCTTACCTGCTGACCTTCTATCCcacacgcagagggagagagagagagagaggagagaaagTTATGTTTCCCCTCCGTGTCCCCATCTTTGCCGTGCTGGTAAGCCTGACCGTGGGTCAGTACGATGACTACGACTACCAGCCGGCCTCCCAGTATGGCCCGTCCAGCGCCAACTGTGCCCAGGAATGCGAGTGCCCCATCAACTTCCCCACTGCCATGTACTGTGACTCCCGCAACCTTAAGTTTGTGCCCATTGTGCCCTCAGGCATCAAGTACCTGTACCTGCAGAACAATCTGATCGAGGAGATCAAGGCTGGGGTCTTCGACAACGTCACGGCTGAACTCCGTTGGCTGGTCCTGGACCATAACCAGATCACCAATGAGAAGGTGGCCAAGGGAACCATCGACAAGCTGACCGGACTTCATAAGATCTTGTTCAGCTTCAACAAACTGACGGAAGCTGTgatccctccctccatgtctttgGACGAGCTGAAGATGATGAACAACCAGCTGTCCAAGTTCCCCGCAGGGAGTCTGGCCGGCATGCAGAACCTGACCTCAGTCCACCTCCAGAACAACGAGTTGACCTCTAAAGCTCTTAACGGGGTCTTCAAGGGCCTCAACAAGCTGGTGGCCATAGACTTGACCAACAACAAGCTGAAGAAGCTGCCCTCAGGCATGCCCAGTTCGCTGGAGACCTTCTATGGCGATCACAATGGCATCAGCAGCATCGCCGCCGGGGACCTCAAAGAGCTGCCCAAGCTGGCGTACCTGAGGTTGGCCTACAATCAGATGACGGATGCAGGGATTCCGGCGGGCGTGTTCAATGTGACGAGCCTGATCGAGCTGGATCTGTCCTACAACAAGCTGCAGTCCATCCCTGAGATCAACGAACAGCTGGAGCATCTCTATCTGCAGGTCAACGAAATCAACAAGTTCAACCTGGAGAATATTTGCAAGTTCTCTGGCCCTCTGAACTACTCCAGACTGAAGCACCTGCGTCTGGATGGGAACAACATCACACATGCCGACCTACCCCATGACTCCTCCAACTGCCTGCGCCAAGCCTCTGACATCATCTTCGACTAAGGACCCTCCCCTCATCCGCAAGTCTCCCTCTGTGACCCTCCCCCGGCACCACGACCTACCCTAAACTAATCCTTCAAACCCCAATAGACACAATGTGGCTATTTTCCAATATCTACAATAGCATACTACTCAGAGTATACGGCCAATATGTTTCTTTATTCTAAGTGGAATGCTGGTGTGGATAATGAACCCGAGCGACAGTGTTTGCAACAACCCTAAATATGTATCCTCCCCCTACCGGCGAAATCGAGGTCACCTCTGTCAACTCATCGGTAGTCCTTTCTGTAAACacagactatgaaataacaaaccAACAAAGGTTAGAAACCCCGGAGAGACCTTTATTTTGCAGTGCATCATGGTATTCTCATGACAACCATAGGGTATTTTGGCCGTAGCAAATGGCTGGCCCTGTACTAATAGTTTTACCCAAATTTGCGGCAAATCAAACAATCGGCCACAATATAATGTAATGGTGCCTCGTAAAAAGCACTTGAACTGTACTTGTctttacttgtttaaaaaaaaaggtgcCTGTTCTTGTGCAAAAGAGACAATATAGGAACATAGGGATTCCTGAATGAAGTGATTTTAATGAAAAAGCATCTCACACACTTCAAACATTCCAAAAGTAGTGGCACATGTTGTTTTCAGACAAGTACATTGAGGAATATGGGAATAAATCTCACTTGCAAATAAATGCATTGCCCATTCCTCTTTTGTATGTTTGtcatgatgtttttttaaaggtttCTTGTATTTAGTCAGTACACTCCCAGAATCACATTGCTGTGCAAAAGACCTGCAGGTAAGGAATAAAAGTATCTAAgagagctgtgttgtgtactctGGTGTAATGTCTACTGGGGAAACATTGAACAGTGGAACACTTTTGGAACCAAATTAAAACTCATATGTCATATGTCAAAAGCTGTGGCATATTCCCCACCTTTCTGTATGAATGTTGTGGGGAAAGTTATTAACCATCCTTATCGACAAGATTAAAAGGCTTGACACTGAATAGCTCTGCTGAAGTAATTTACTGTTTTTTTAATGAGTTATCATGCAGTTAAATAAGAGTCAATCGCCCGTTCATTGCAGATCACCGTTGTTATGCCGACATTTATACAACATTTGCATTGCTTGCATGCATCTCATGGTAACTCTGTATGATAATAAAAGCTAGCATTTGACGTTTTTATCCATTCATGGTTACCTTGTTTGCCATGTTTCATGTGTGCTTTTGCCCGTATAGCTTTATCAGAATAGCAACAATTTGTTGTGACGCTAACTTTATCTTGCTCTGTTGTGGCAACGTTGGTGGAATGTCATGTGCTATTTGGGCAGAGTATATCCCGATTTATTTTCATTATGGCTTTTGACTCAGTAATCGCTGGTGAATTTACTGTGAGGACATAACATACATTTGAATAAACTACATTTCCAATA

Function

symbol description
lum Acts upstream of or within collagen fibril organization and embryonic camera-type eye morphogenesis. Predicted to be located in collagen-containing extracellular matrix and extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including digestive system; epidermis; head mesenchyme; heart; and nervous system. Human ortholog(s) of this gene implicated in carotid artery disease; coronary artery disease; and pancreatic cancer. Orthologous to human LUM (lumican).

NR:

description
lumican-like

GO:

id name namespace
GO:0030199 collagen fibril organization biological_process
GO:0007601 visual perception biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process

KEGG:

id description
K08122 LUM; lumican

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564007.2 False 2953 mRNA 0.46 3 62886728 62890891
XM_021564008.2 True 2977 mRNA 0.46 3 62886728 62890920

Neighbor

gene id symbol gene type direction distance location
LOC110490576 LOC106576462 coding downstream 4125 62875090 ~ 62882603 (-)
LOC110490574 LOC106609040 coding downstream 13978 62850140 ~ 62872750 (-)
si:ch211-244b2.4 LOC106576452 coding downstream 45054 62821255 ~ 62841674 (-)
LOC118938823 NA coding downstream 65575 62820086 ~ 62821153 (-)
LOC110490778 fut9 coding downstream 109957 62774696 ~ 62776771 (-)
LOC118936239 LOC100301653 coding upstream 15044 62905964 ~ 62932588 (-)
LOC110490858 LOC106609036 coding upstream 90251 62981171 ~ 62985780 (-)
LOC110490579 LOC106576460 coding upstream 240430 63131350 ~ 63136329 (-)
LOC110490580 LOC106576502 coding upstream 342854 63233774 ~ 63254079 (-)
LOC110490779 LOC106609576 coding upstream 365518 63256438 ~ 63282396 (-)
G1316483 NA non-coding downstream 4463 62881842 ~ 62882265 (-)
G1316442 NA non-coding downstream 95005 62791606 ~ 62791723 (-)
G1316436 NA non-coding downstream 103695 62782751 ~ 62783033 (-)
G1316435 NA non-coding downstream 104507 62781727 ~ 62782221 (-)
G1316434 NA non-coding downstream 105137 62781144 ~ 62781591 (-)
G1316504 NA non-coding upstream 48728 62939648 ~ 62939860 (-)
G1316509 LOC106562530 non-coding upstream 53245 62944165 ~ 62944562 (-)
G1316511 NA non-coding upstream 59721 62950641 ~ 62950909 (-)
G1316515 NA non-coding upstream 62160 62953080 ~ 62953343 (-)
G1316516 NA non-coding upstream 62745 62953665 ~ 62953991 (-)
LOC110490571 LOC106596632 other downstream 119229 62754956 ~ 62767499 (-)
G1316323 NA other downstream 349258 62534288 ~ 62537470 (-)
G1316178 NA other downstream 622698 62257098 ~ 62264093 (-)
G1316051 LOC106609550 other downstream 830705 62042770 ~ 62056023 (-)
G1315518 NA other downstream 913033 61874995 ~ 62006707 (-)
G1316451 NA other upstream 11939 62902859 ~ 62904682 (-)
G1316904 LOC106609576 other upstream 395587 63256527 ~ 63287904 (-)
G1318092 NA other upstream 1192117 64083037 ~ 64083888 (-)
G1318164 LOC106576481 other upstream 1325584 64216504 ~ 64227675 (-)
LOC110499867 LOC106576572 other upstream 1591907 64481916 ~ 64636502 (-)

Expression


Co-expression Network