LOC110490858 (LOC106609036)


Basic Information

Item Value
gene id LOC110490858
gene name LOC106609036
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 62981171 ~ 62985780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944946.1
ACTGCTTGGTTCAGCAGCGTTTCTCCTTGCATTGAGAGAGTTTGGTATGACTCCCACAGGACAACATACACAGATGCATGATATTGGCTCTGACGTCTAAGGGCACAGCAGAAGACCATGGAAGAACTCACTCTGCTACTCTGGCTCCTGATAGTTCCTCTTCAATCATTTGTACTTCAGCCCAGAGTGGAAATGATCCTCATAGAAGACTCGGTCAGAGAAACAGATCCCTGGTCAGACTGGAGACCTGAGAGATTGAGGGAGACCACAACAGCAGACGAAGAGGAGGGTGAAGAACTCACTGCAACCCACCctgaagaggggagggaggaagaggggaggagcgAGGAAGGACTAACTCTAGAGACGGATTCTGAGAAgtggagaatagaggaggagaaggaggcagCAGAGCAGGAGGGCCATGAGGAAGagcgagggatggaggaagagagaaagctgGTTGGAGGGCTTGattacagagagaagaagagatttgAAAATGGGGAGATAGAAGCTGATGAGGAACATGAAgacgaggaggagagaagagataatggagaggggagacatGAAGAAGGGATTAGATCAgatgatgaggagagaggtgttaaGGAAAAGAGAGcatatggaggagaggagaaactaGAAGAAGACCGGAGAGTTGGGGAAGTTAAAGAACCCAGTGTAGATCAAGGCGAGAGAGACTACTTAGTTGTTACACACATAGACCTCCCCCCTCCAACCAGcacttcctcctctcctgtagaaAAAGTAACAGACACTCAACCTGTCAATCAAGCTATCAACAAACCCATGTCCCCTCCCCCTGCAGCTATGCCTGTTCTACTTTATGATGTCACTCCTCCACCTGCCACTCATCATGACCCTCCCCCAGTTACACCTGCTACCTCCTCTCAAGTTCCAGAGTCTGCCACTCATGCTCTCGCTCAACCTGCCAGTCATATCCAAGACCCGGCTCCAGAGGCAGAGGAGGCCATCTCATTGGCGGACAGTGAGCTCATTATGGTTCAGAGTGTGACTGACAGCTCCCAGACCAACCGCAGTGAGTGGGAGAGTTTTGTTTTGCAGGCAATGGAGGTCAAAGTTGGCCCAATTGTCAAGGTTTCAGTCAATGACAATCAGACTGAGAGGAACAGCATTGTCTTTCTCAAAGAGACAGAAAATACATTCAAGCAGCTAAAGTCTACAGACAAACCAAAACAAGCAAAACCCACAGCCAAGGAACTGCAACCTACAGCCAAACCAAAAGAGATGACAAAACCAACAGCCAAACCCAAATTGACGGTACAGACAAACTCCACACCCAAAACACAACAGACAAACCATACACCCAAAACACAACAGGCAAAACCCACAGCCAAGGAACTGCAACCTACAGCCAAACCAAAAGAGATGACAAAACCAACAGTGACAGTACAGACAAACCCTACACCCAAAACACTAGACTCAAAGCCTATAcccaaaacactacacacaaactcCAGACCAAAAACACAACAGACAAACCATACACCCAAAACACAACAGACAAAACCTACACCCGAAACACAACTGACAAAGCCTACACCTGAAACACAACTGACAAAGCCTACACCTGAAACACAACTGACAAAACTTACACCCAGAACACAACAGACAAAACCTTCACCCAAAACACAACAGACAAAACCTACAGCCAAACTAGCAGTGCCAAAACACACAATGAAGCTGACACAGACTACCAAGAGTATCAAGACAAAGACAGTGAAACATCAAAAGAAAGACAAAATAAATGAGAGGAAAGGTAAACCTCTGAAAAAGGACAACAAAACCAAAGAGACAAAACAGGAAAAGAAGGAGGGCACAAATCCGGCATACTTCCCCTACTTCAAAGACAGCTACTGTCCACCGGAGTGTGCCTGCTATGGACGAGTGGTCCAGTGTTCCGACAAGGGGGTGGAGAAGGTTCCGTACGGCATCCCTTATAACTCCCGCTACATCCTCCTGATGAACAACCGCATCGACAGCATTCAGCTGGACCTGCTCAATGAGTACCTGTCCATGGAGTTCCTGGTGCTCAGCAACAACCGGCTGACAGACGGCTCCATCGAGGGGGCCTTCGAGGGCATCCCAGCCCTGAGGCGGCTCTACCTGGACCGGAACCTACTGGAGAGCGTGCCCACAGACCTGCCCGCCTCCCTGGAAGAGCTACGTCTGGATAACAACCAGCTGAACGTGATGTCGGAGGGAGCCTGGGCCCACTGCCCTGGCCTGCTGGTCCTCAGCCTCAGCAACAACAGCCTGGGGAATGGGAACGATACTCTCCCCGCCAGTGTGCTCTCACCTCTGGGCAGCCTGCGCACCCTCAGCCTGGACCGCAACCGGCTGGCCTCGGTGCCTCTGGGCTTACCGCTATCTATCAGGGAGTTGTACCTCCGTGGCAACCTTATCCAGAAGTTCCCAGGGGAGGCCTTCATGGGCACCTCAGAGCTGGTGATTCTGGATTTGAGCGCTAACCGGCTAACCAACCATGGCCTGCTCAGGGAGTCCCTCGTCAACGCCACCCACCTGGAGAGCCTCAACTTAGAGGGCAACCAGCTCAAGAAGGTACCCCGccatctcccctcttccctcaaAACCCTCAACCTGGAGGGCAACCTCATCTCCTCCGTGGGCAAAgcctccttcctccacctcccccaccTGGAGCACCTGGGCCTGGCCAGTAACAAGATAGCCAGGGTGGCCTCGGGGGCTTTCAGGGCGCTGCCTGTTCTGCACCAACTGGACCTGTGTCACAACGCCCTGAGCCAGGTGCCCAGGCAGCTGCCCCGGGGGCTACACACAACAAGATCCACTCAGTGCCCCGCGACGCCTTCTGCTGGGGGGGTTCAGACCCCGGCCTCAGCAGCCTGGTGCTGGTGCAGCTGGAGCACAACCTCATAGACCTGGGCCACCTGGACGCAAAAGCCTTCCACTGCCTCAGAGGCTTCCAGGTGGTACACTTCTACTGAGCTGCAGTCTATAGAATCCTGCAGGACAGTCAAACTGCAAGTATAGATTATAAACAATCCCACAACTGAAACCAATTGCTGTGTTTTTTCTGTTCAACCTGAAAGTCCGTTGGGCTCTAAAATGGCGGTAAAATGTTCTGCaatacacagagaaacaaacatcATGTCGGGAGCTGATTTTGATTCAACATTACAAGATAACAATGCAAGATGGCCAGTTGAGTGAACTTGGATCTCAATGTGGAtagctatactgtactgtatgccgTCGCTTGGGTAAAGCTGTGATTGATGGAAGCCATGGTGTTCAGAGAAAATACTTACTGGAACCGCTTCCATGAAGTCTGTGTTGAAAGACTATGGCCTACTTAAAGGTCAATGATgccacgtacagttgaagtcaaaagaaTGTGaaatcagaataatagtagagataattatttatttcagcttttatttctttcatcacattcccagtggatcagaagtttacatacagcacactcaattag
>XM_021564288.2
gtgtgtgtgtcatactaTTTGGGGGTCCTCATTCCTAGAGGACTGCTTGGTTCAGCAGCGTTTCTCCTTGCATTGAGAGAGTTTGGTATGACTCCCACAGGACAACATACACAGATGCATGATATTGGCTCTGACGTCTAAGGGCACAGCAGATAGAAGACCATGGAAGAACTCACTCTGCTACTCTGGCTCCTGATAGTTCCTCTTCAATCATTTGTACTTCAGCCCAGAGTGGAAATGATCCTCATAGAAGACTCGGTCAGAGAAACAGATCCCTGGTCAGACTGGAGACCTGAGAGATTGAGGGAGACCACAACAGCAGACGAAGAGGAGGGTGAAGAACTCACTGCAACCCACCctgaagaggggagggaggaagaggggaggagcgAGGAAGGACTAACTCTAGAGACGGATTCTGAGAAgtggagaatagaggaggagaaggaggcagCAGAGCAGGAGGGCCATGAGGAAGagcgagggatggaggaagagagaaagctgGTTGGAGGGCTTGattacagagagaagaagagatttgAAAATGGGGAGATAGAAGCTGATGAGGAACATGAAgacgaggaggagagaagagataatggagaggggagacatGAAGAAGGGATTAGATCAgatgatgaggagagaggtgttaaGGAAAAGAGAGcatatggaggagaggagaaactaGAAGAAGACCGGAGAGTTGGGGAAGTTAAAGAACCCAGTGTAGATCAAGGCGAGAGAGACTACTTAGTTGTTACACACATAGACCTCCCCCCTCCAACCAGcacttcctcctctcctgtagaaAAAGTAACAGACACTCAACCTGTCAATCAAGCTATCAACAAACCCATGTCCCCTCCCCCTGCAGCTATGCCTGTTCTACTTTATGATGTCACTCCTCCACCTGCCACTCATCATGACCCTCCCCCAGTTACACCTGCTACCTCCTCTCAAGTTCCAGAGTCTGCCACTCATGCTCTCGCTCAACCTGCCAGTCATATCCAAGACCCGGCTCCAGAGGCAGAGGAGGCCATCTCATTGGCGGACAGTGAGCTCATTATGGTTCAGAGTGTGACTGACAGCTCCCAGACCAACCGCAGTGAGTGGGAGAGTTTTGTTTTGCAGGCAATGGAGGTCAAAGTTGGCCCAATTGTCAAGGTTTCAGTCAATGACAATCAGACTGAGAGGAACAGCATTGTCTTTCTCAAAGAGACAGAAAATACATTCAAGCAGCTAAAGTCTACAGACAAACCAAAACAAGCAAAACCCACAGCCAAGGAACTGCAACCTACAGCCAAACCAAAAGAGATGACAAAACCAACAGCCAAACCCAAATTGACGGTACAGACAAACTCCACACCCAAAACACAACAGACAAACCATACACCCAAAACACAACAGGCAAAACCCACAGCCAAGGAACTGCAACCTACAGCCAAACCAAAAGAGATGACAAAACCAACAGTGACAGTACAGACAAACCCTACACCCAAAACACTAGACTCAAAGCCTATAcccaaaacactacacacaaactcCAGACCAAAAACACAACAGACAAACCATACACCCAAAACACAACAGACAAAACCTACACCCGAAACACAACTGACAAAGCCTACACCTGAAACACAACTGACAAAGCCTACACCTGAAACACAACTGACAAAACTTACACCCAGAACACAACAGACAAAACCTTCACCCAAAACACAACAGACAAAACCTACAGCCAAACTAGCAGTGCCAAAACACACAATGAAGCTGACACAGACTACCAAGAGTATCAAGACAAAGACAGTGAAACATCAAAAGAAAGACAAAATAAATGAGAGGAAAGGTAAACCTCTGAAAAAGGACAACAAAACCAAAGAGACAAAACAGGAAAAGAAGGAGGGCACAAATCCGGCATACTTCCCCTACTTCAAAGACAGCTACTGTCCACCGGAGTGTGCCTGCTATGGACGAGTGGTCCAGTGTTCCGACAAGGGGGTGGAGAAGGTTCCGTACGGCATCCCTTATAACTCCCGCTACATCCTCCTGATGAACAACCGCATCGACAGCATTCAGCTGGACCTGCTCAATGAGTACCTGTCCATGGAGTTCCTGGTGCTCAGCAACAACCGGCTGACAGACGGCTCCATCGAGGGGGCCTTCGAGGGCATCCCAGCCCTGAGGCGGCTCTACCTGGACCGGAACCTACTGGAGAGCGTGCCCACAGACCTGCCCGCCTCCCTGGAAGAGCTACGTCTGGATAACAACCAGCTGAACGTGATGTCGGAGGGAGCCTGGGCCCACTGCCCTGGCCTGCTGGTCCTCAGCCTCAGCAACAACAGCCTGGGGAATGGGAACGATACTCTCCCCGCCAGTGTGCTCTCACCTCTGGGCAGCCTGCGCACCCTCAGCCTGGACCGCAACCGGCTGGCCTCGGTGCCTCTGGGCTTACCGCTATCTATCAGGGAGTTGTACCTCCGTGGCAACCTTATCCAGAAGTTCCCAGGGGAGGCCTTCATGGGCACCTCAGAGCTGGTGATTCTGGATTTGAGCGCTAACCGGCTAACCAACCATGGCCTGCTCAGGGAGTCCCTCGTCAACGCCACCCACCTGGAGAGCCTCAACTTAGAGGGCAACCAGCTCAAGAAGGTACCCCGccatctcccctcttccctcaaAACCCTCAACCTGGAGGGCAACCTCATCTCCTCCGTGGGCAAAgcctccttcctccacctcccccaccTGGAGCACCTGGGCCTGGCCAGTAACAAGATAGCCAGGGTGGCCTCGGGGGCTTTCAGGGCGCTGCCTGTTCTGCACCAACTGGACCTGTGTCACAACGCCCTGAGCCAGGTGCCCAGGCAGCTGCCCCGGGGGCTACACACAACAAGATCCACTCAGTGCCCCGCGACGCCTTCTGCTGGGGGGGTTCAGACCCCGGCCTCAGCAGCCTGGTGCTGGTGCAGCTGGAGCACAACCTCATAGACCTGGGCCACCTGGACGCAAAAGCCTTCCACTGCCTCAGAGGCTTCCAGGTGGTACACTTCTACTGAGCTGCAGTCTATAGAATCCTGCAGGACAGTCAAACTGCAAGTATAGATTATAAACAATCCCACAACTGAAACCAATTGCTGTGTTTTTTCTGTTCAACCTGAAAGTCCGTTGGGCTCTAAAATGGCGGTAAAATGTTCTGCaatacacagagaaacaaacatcATGTCGGGAGCTGATTTTGATTCAACATTACAAGATAACAATGCAAGATGGCCAGTTGAGTGAACTTGGATCTCAATGTGGAtagctatactgtactgtatgccgTCGCTTGGGTAAAGCTGTGATTGATGGAAGCCATGGTGTTCAGAGAAAATACTTACTGGAACCGCTTCCATGAAGTCTGTGTTGAAAGACTATGGCCTACTTAAAGGTCAATGATgccacgtacagttgaagtcaaaagaaTGTGaaatcagaataatagtagagataattatttatttcagcttttatttctttcatcacattcccagtggatcagaagtttacatacagcacactcaattag

Function

NR:

description
asporin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944946.1 False 3529 mRNA 0.50 4 62981171 62985739
XM_021564288.2 True 3574 mRNA 0.50 4 62981171 62985780

Neighbor

gene id symbol gene type direction distance location
LOC118936239 LOC100301653 coding downstream 48583 62905964 ~ 62932588 (-)
LOC110490577 lum coding downstream 90251 62886728 ~ 62890920 (-)
LOC110490576 LOC106576462 coding downstream 98568 62875090 ~ 62882603 (-)
LOC110490574 LOC106609040 coding downstream 108421 62850140 ~ 62872750 (-)
si:ch211-244b2.4 LOC106576452 coding downstream 139497 62821255 ~ 62841674 (-)
LOC110490579 LOC106576460 coding upstream 145570 63131350 ~ 63136329 (-)
LOC110490580 LOC106576502 coding upstream 247994 63233774 ~ 63254079 (-)
LOC110490779 LOC106609576 coding upstream 270658 63256438 ~ 63282396 (-)
LOC110490581 NA coding upstream 300587 63286367 ~ 63288128 (-)
LOC118938824 NA coding upstream 331980 63317760 ~ 63318286 (-)
G1316516 NA non-coding downstream 27180 62953665 ~ 62953991 (-)
G1316515 NA non-coding downstream 27828 62953080 ~ 62953343 (-)
G1316511 NA non-coding downstream 30262 62950641 ~ 62950909 (-)
G1316509 LOC106562530 non-coding downstream 36609 62944165 ~ 62944562 (-)
G1316504 NA non-coding downstream 41311 62939648 ~ 62939860 (-)
G1316815 NA non-coding upstream 88023 63073803 ~ 63074108 (-)
G1316816 NA non-coding upstream 90773 63076553 ~ 63076799 (-)
G1316823 NA non-coding upstream 98278 63084058 ~ 63084291 (-)
G1316829 NA non-coding upstream 106816 63092596 ~ 63092920 (-)
G1316831 NA non-coding upstream 111134 63096914 ~ 63097373 (-)
G1316451 NA other downstream 76489 62902859 ~ 62904682 (-)
LOC110490571 LOC106596632 other downstream 213672 62754956 ~ 62767499 (-)
G1316323 NA other downstream 443701 62534288 ~ 62537470 (-)
G1316178 NA other downstream 717141 62257098 ~ 62264093 (-)
G1316051 LOC106609550 other downstream 925148 62042770 ~ 62056023 (-)
G1316904 LOC106609576 other upstream 300727 63256527 ~ 63287904 (-)
G1318092 NA other upstream 1097257 64083037 ~ 64083888 (-)
G1318164 LOC106576481 other upstream 1230724 64216504 ~ 64227675 (-)
LOC110499867 LOC106576572 other upstream 1497047 64481916 ~ 64636502 (-)
G1318477 NA other upstream 2082497 65068277 ~ 65153287 (-)

Expression


Co-expression Network