LOC110490579 (LOC106576460)


Basic Information

Item Value
gene id LOC110490579
gene name LOC106576460
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 63131350 ~ 63136329 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564010.2
CCTTTCCTCCAACACATTCGTTCACTCTGGTGGAGTAAAGTGACATTGAAAGGGTGCCTCAACGTGGCATCCTAGAGAAAGACCCCTCTATTTACCAACAGCCGTCACCACACTGTACCGTCCTGGCACACGTAGTACCCTCCGAAACGTCCCTACCTCGACTAATAAATGACCATCATAGGCGCCAGAGAAATAAAACAAGCGAAAGACACGGATCATTATCCGAACGTGGAGAGAAAAACAACGAATCATTTTCGGAATCATATGAAGGAAAAGCGCACGAATCGTCGTCGCAGTTGCCTTCTCAATGCATACCCTTTGTGCTCGGGGAACGATGAAACCAGAGATTAGCGCCGCGGTCGGGTTTCTGTCGAGATTTCTGCGGATAAAAGGACACGTAAATGACAGACAGCTTCAATCATTCAGCGCAAGTttacaggatattttgtcagaGCAATACAAGCACCACTGGTTCCCCGACAGGCCCTGCAAGGGCTCGGGCTACCGCTGCATCCGCATCAACCACAAGATGGATCCCCTGGTGGGACAGGCAGGCCAGCGCATCGGCCTGACCATCAATCAGCTCTACCTGCTGCTGCCTAGTGAGCTCACCCTCTGGGTGGACCCCTTCGAGGTGTCCTACCGCATCGGCGAGGACGGCTCCATCTGCGTGCTCTACGAGTCCCAGCCGGTGGCCCCGGCGCCGTCGGGAGGCAGTGCGGTCACCTCGACCCCCATGGTGGACAGTCACATCAGCTGCAAGGAGGCGGCGGGGATGCTGGGCAGGACCAGCCCTTCCAAAGCCTACAACATGATGACTATGTCCAGCTAAGGGCTGCCACCCGCCACGTCGGGTCGTGGGTTTCGCCCTAGTTGGTCGATGGCGAACCTTTTTAAAGCTAAaaagaaatgaaatgaaaaa

Function

NR:

description
PREDICTED: protein BTG1-like

GO: NA

KEGG:

id description
K14443 TOB; protein Tob/BTG

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564010.2 True 922 mRNA 0.54 2 63131350 63136329

Neighbor

gene id symbol gene type direction distance location
LOC110490858 LOC106609036 coding downstream 145570 62981171 ~ 62985780 (-)
LOC118936239 LOC100301653 coding downstream 198762 62905964 ~ 62932588 (-)
LOC110490577 lum coding downstream 240430 62886728 ~ 62890920 (-)
LOC110490576 LOC106576462 coding downstream 248747 62875090 ~ 62882603 (-)
LOC110490574 LOC106609040 coding downstream 258600 62850140 ~ 62872750 (-)
LOC110490580 LOC106576502 coding upstream 97445 63233774 ~ 63254079 (-)
LOC110490779 LOC106609576 coding upstream 120109 63256438 ~ 63282396 (-)
LOC110490581 NA coding upstream 150038 63286367 ~ 63288128 (-)
LOC118938824 NA coding upstream 181431 63317760 ~ 63318286 (-)
prrt4 LOC106576496 coding upstream 191658 63327987 ~ 63366682 (-)
G1316834 NA non-coding downstream 26965 63103339 ~ 63104385 (-)
G1316832 NA non-coding downstream 33539 63097522 ~ 63097811 (-)
G1316831 NA non-coding downstream 33977 63096914 ~ 63097373 (-)
G1316829 NA non-coding downstream 38430 63092596 ~ 63092920 (-)
G1316823 NA non-coding downstream 47059 63084058 ~ 63084291 (-)
G1316872 NA non-coding upstream 52417 63188746 ~ 63188959 (-)
G1316874 NA non-coding upstream 53509 63189838 ~ 63190042 (-)
G1316853 NA non-coding upstream 63324 63199653 ~ 63199979 (-)
G1316895 NA non-coding upstream 82080 63218409 ~ 63220537 (-)
G1316904 LOC106609576 non-coding upstream 120198 63256527 ~ 63287904 (-)
G1316451 NA other downstream 226668 62902859 ~ 62904682 (-)
LOC110490571 LOC106596632 other downstream 363851 62754956 ~ 62767499 (-)
G1316323 NA other downstream 593880 62534288 ~ 62537470 (-)
G1316178 NA other downstream 867320 62257098 ~ 62264093 (-)
G1316051 LOC106609550 other downstream 1075327 62042770 ~ 62056023 (-)
G1318092 NA other upstream 946708 64083037 ~ 64083888 (-)
G1318164 LOC106576481 other upstream 1080175 64216504 ~ 64227675 (-)
LOC110499867 LOC106576572 other upstream 1346498 64481916 ~ 64636502 (-)
G1318477 NA other upstream 1931948 65068277 ~ 65153287 (-)

Expression


Co-expression Network