LOC110490585 (LOC106609575)


Basic Information

Item Value
gene id LOC110490585
gene name LOC106609575
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 63383215 ~ 63407684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564026.2
GACAGGTCCGATAATATGATTTCTGTTTGTGGACCGTGACAACGGACCTGGGCTCTCGTGACATTTAACGGCAAATGGAAAAGCGTATGTGAATATGCAGTTGAGTTTGTTTTTCCGCGCCCACTAGGTGAAACGAAGGGCACGAGTAAAACCAGGACACGGAACGGACTGGAGCGGCGCAGAATCGAATAAACTCAGGATCTTGAAAGTTGTGGTTATTTCCAACCCTATCGAGTTCGTTTATAACGGACGGTTCATGAATGCTCGAATCTATTAAAGTGGTTAATTCACAGAAAGAAGACCGTGGAGGGTGGGCAGATTTTCAACTGCTATGAGGATTCTCAAATTCTTCATGGGTAACTCCCACTCTGGGTCAGACATGTCTGTGATAGTGGGAGAGGGGCGGGTCAAAGCCTGGACGGTCACCAGAAGCATCACCTACTACTACACCAGCGATACCCCTGCccaccctcctcccacctcctccttaTCCTCCCATCTAgactctcctcttccctccccctcctactCCCTCTCCGCCCCCTTTATCTCAGACATGCCCTCTCACCCCACCGTTTCCTCAACTCTCACCCCTTCATTTTCGGATGTAccaaccctctctccatcctcgccctcctcctccccccgtcCCCTCCTCCTGCTTTTCCCGTGGCTGGGCGCCCGACCGGGGGCCATGGCGAAGTACCGGGACCTCTACCTGGAACGCGGCCTGGACATCCTATCTGTGGAGAGCACTGTGTGGCACTTCCTGTGGCCTCGCTGGGGGCTGGAGTACGGGGCTGAGGTCCTGGAGGTCCTGGGAGACCCGCGTTTCAAAGGTCGCCCCCTTCTGGTCCACGCCTTCTCCATCGGCGGGTACACCTTCACCCAGCTGCTCAGCCAGATGGACAGGGAGCCACACAAGTACCCAGGCCTGGCCCAACGGGTCGTAGGACATGTCTATGACAGCATGGTGGTCGGGTCGCTGGAGCATATGGCTAAagGCCTTGGTCTGACCCTGTTCCCTCATATCGAGCCCCTGGTGCGATACACTGCTCTGCTCTTCTTCTGGCTCTTCAAGTCCCAGACGGTGTACTACTACGACAAGTCAATCCAGGTCTTCTACAACAGCCCCGTCACTGCCCCGGCGCTCTTCTTCTTCTGCGAGAACGACGCGCTGTGCGACCCCGTCGCCATGGAGGCGACCATCTACATCTGGAGGAAGCGGGGCATTGCTGTGGAAACCGGGAAGTGGAAGGAGTCTGTGCACGCTGCTCATCTACGCTGTCACCCGGAGGAGTACCTCTCCATGTTGGAAACATTTATGATCTCGCTCAACATCGCCACCCTCAGGGAGAAGATGTAAATGGCTCATgtgctatggg
>XM_021564025.2
CCCTATTTGTATATGGAGATCGGAGATCGGTTATAAAGGAAGGTCAGATGAATCCTGGAATCTACTAAACCGGTTAATTCACTCACAGAAAGAAGACGGTGGACAGATTTTCAACTGCTATGGGGATACTCAAATTCTTCATGGGTAACTCCCACTCTGGGTCAGACATGTCTGTGATAGTGGGAGAGGGGCGGGTCAAAGCCTGGACGGTCACCAGAAGCATCACCTACTACTACACCAGCGATACCCCTGCccaccctcctcccacctcctccttaTCCTCCCATCTAgactctcctcttccctccccctcctactCCCTCTCCGCCCCCTTTATCTCAGACATGCCCTCTCACCCCACCGTTTCCTCAACTCTCACCCCTTCATTTTCGGATGTAccaaccctctctccatcctcgccctcctcctccccccgtcCCCTCCTCCTGCTTTTCCCGTGGCTGGGCGCCCGACCGGGGGCCATGGCGAAGTACCGGGACCTCTACCTGGAACGCGGCCTGGACATCCTATCTGTGGAGAGCACTGTGTGGCACTTCCTGTGGCCTCGCTGGGGGCTGGAGTACGGGGCTGAGGTCCTGGAGGTCCTGGGAGACCCGCGTTTCAAAGGTCGCCCCCTTCTGGTCCACGCCTTCTCCATCGGCGGGTACACCTTCACCCAGCTGCTCAGCCAGATGGACAGGGAGCCACACAAGTACCCAGGCCTGGCCCAACGGGTCGTAGGACATGTCTATGACAGCATGGTGGTCGGGTCGCTGGAGCATATGGCTAAagGCCTTGGTCTGACCCTGTTCCCTCATATCGAGCCCCTGGTGCGATACACTGCTCTGCTCTTCTTCTGGCTCTTCAAGTCCCAGACGGTGTACTACTACGACAAGTCAATCCAGGTCTTCTACAACAGCCCCGTCACTGCCCCGGCGCTCTTCTTCTTCTGCGAGAACGACGCGCTGTGCGACCCCGTCGCCATGGAGGCGACCATCTACATCTGGAGGAAGCGGGGCATTGCTGTGGAAACCGGGAAGTGGAAGGAGTCTGTGCACGCTGCTCATCTACGCTGTCACCCGGAGGAGTACCTCTCCATGTTGGAAACATTTATGATCTCGCTCAACATCGCCACCCTCAGGGAGAAGATGTAAATGGCTCATgtgctatggg
>XM_036944949.1
ttaacacCCACCACATGCCAAATGACAGTAGATTTTGGCATTGGAGGGTAAaatgtctatttcaccagccacGTTTGCAGGCGATCAGGGCTCCACAGTGCGAGCATTTCACTCGCATTAATTTGGAGAATAAAAATAGTCAAGTATGATCGCGCAAAGTCAAAGAACTACGAATCCTATTCAGCACTTCGCgctgcaacactgcctggctgtGCGCATGTGAAGAGCTGAGTGAAATATTCATTTTTAGAAGCGCTGCTCACATGCATAAAAGTTGCTCTAATTGACTTGAAACgagactgtgttgttgtgtttcttgactatttacattgttttgttcacaagctaggttgtttttctatgtttgagtTTTAAATGCTAGGGAAGAGGTGACAACGCTTCTAATAGTCAGACTGAAAGTCACAGTCACAAACATGACTCTAGTCGCGCTACCACGGTAACCTCCCGACCTTAAAGGCATAACTCCCACTCTGGGTCAGACATGTCTGTGATAGTGGGAGAGGGGCGGGTCAAAGCCTGGACGGTCACCAGAAGCATCACCTACTACTACACCAGCGATACCCCTGCccaccctcctcccacctcctccttaTCCTCCCATCTAgactctcctcttccctccccctcctactCCCTCTCCGCCCCCTTTATCTCAGACATGCCCTCTCACCCCACCGTTTCCTCAACTCTCACCCCTTCATTTTCGGATGTAccaaccctctctccatcctcgccctcctcctccccccgtcCCCTCCTCCTGCTTTTCCCGTGGCTGGGCGCCCGACCGGGGGCCATGGCGAAGTACCGGGACCTCTACCTGGAACGCGGCCTGGACATCCTATCTGTGGAGAGCACTGTGTGGCACTTCCTGTGGCCTCGCTGGGGGCTGGAGTACGGGGCTGAGGTCCTGGAGGTCCTGGGAGACCCGCGTTTCAAAGGTCGCCCCCTTCTGGTCCACGCCTTCTCCATCGGCGGGTACACCTTCACCCAGCTGCTCAGCCAGATGGACAGGGAGCCACACAAGTACCCAGGCCTGGCCCAACGGGTCGTAGGACATGTCTATGACAGCATGGTGGTCGGGTCGCTGGAGCATATGGCTAAagGCCTTGGTCTGACCCTGTTCCCTCATATCGAGCCCCTGGTGCGATACACTGCTCTGCTCTTCTTCTGGCTCTTCAAGTCCCAGACGGTGTACTACTACGACAAGTCAATCCAGGTCTTCTACAACAGCCCCGTCACTGCCCCGGCGCTCTTCTTCTTCTGCGAGAACGACGCGCTGTGCGACCCCGTCGCCATGGAGGCGACCATCTACATCTGGAGGAAGCGGGGCATTGCTGTGGAAACCGGGAAGTGGAAGGAGTCTGTGCACGCTGCTCATCTACGCTGTCACCCGGAGGAGTACCTCTCCATGTTGGAAACATTTATGATCTCGCTCAACATCGCCACCCTCAGGGAGAAGATGTAAATGGCTCATgtgctatggg

Function

NR:

description
uncharacterized protein LOC110490585 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564026.2 False 1385 mRNA 0.56 3 63383215 63407684
XM_021564025.2 False 1173 mRNA 0.57 3 63404730 63407684
XM_036944949.1 True 1508 mRNA 0.54 3 63404902 63407684

Neighbor

gene id symbol gene type direction distance location
impdh1b LOC106576497 coding upstream 55399 63298348 ~ 63327816 (+)
LOC110490575 LOC106609039 coding upstream 532923 62844136 ~ 62850292 (+)
scyl2 scyl2 coding upstream 566381 62792914 ~ 62816834 (+)
depdc4 LOC106609043 coding upstream 590476 62786627 ~ 62792739 (+)
LOC110490567 anks1b coding upstream 793483 62231272 ~ 62589732 (+)
LOC110490817 LOC106576481 coding downstream 814400 64222084 ~ 64227831 (+)
pax4 LOC106576509 coding downstream 998382 64406007 ~ 64408064 (+)
LOC118938929 LOC106576509 coding downstream 1001229 64408913 ~ 64410363 (+)
LOC110499870 NA coding downstream 1136451 64544135 ~ 64552715 (+)
LOC110510792 wnt5b coding downstream 1295097 64702781 ~ 64824029 (+)
G1316717 NA non-coding upstream 6644 63376361 ~ 63376571 (+)
G1316709 NA non-coding upstream 18692 63364240 ~ 63364523 (+)
G1316676 NA non-coding upstream 93707 63289209 ~ 63289508 (+)
G1316667 LOC106609576 non-coding upstream 101355 63280874 ~ 63281860 (+)
G1317006 NA non-coding downstream 55976 63463660 ~ 63463903 (+)
G1317014 NA non-coding downstream 64083 63471767 ~ 63472105 (+)
G1317024 NA non-coding downstream 74104 63481788 ~ 63482023 (+)
G1317027 NA non-coding downstream 75389 63483073 ~ 63483354 (+)
G1317046 NA non-coding downstream 90477 63498161 ~ 63498537 (+)
G1316007 LOC100301653 other upstream 450693 62921704 ~ 62932522 (+)
G1315860 NA other upstream 768028 62614795 ~ 62615187 (+)
G1315679 NA other upstream 1119199 62257134 ~ 62264016 (+)
G1315616 NA other upstream 1236055 62100972 ~ 62147160 (+)
G1317320 NA other downstream 406156 63813840 ~ 63814369 (+)
G1317674 LOC106613263 other downstream 981922 64389606 ~ 64390097 (+)
G1317686 LOC106576509 other downstream 999325 64407009 ~ 64410034 (+)
G1317968 NA other downstream 1752292 65159976 ~ 65179127 (+)
LOC110518394 LOC107732972 other downstream 1884118 65291802 ~ 65866042 (+)

Expression


Co-expression Network