LOC110490780 (snd1)


Basic Information

Item Value
gene id LOC110490780
gene name snd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 64018813 ~ 64387969 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944950.1
ATCTGCCCCATTCATTTCTAATCCTGTACCCGGAAAAGTAACTCTTTGACGTGTATGCATGGTACCGTGTGTTTCCGGTATAGCGTGTGTTCACAGTTATCCAGCCTTTTCCTCTTGGGTTTCAATAGAACAGTCACTTTGGATTCCCGGCTCCTTACCTGTTTCCCCCTAAACGGCGTATCTAACTTTGTGGACATGGCATCATCAGTTTCGGCACAGGCGAATCCTGCTCCGGTTGCGGCGCTCCAGAGAGGAATAGTCAAGATGGTCTTGTCAGGATGTGCAATAATCGTGAGGGGCCAGCCACGGGGAGGCCCACCCCCGGAGCGTCAGATCAACCTGAGCAACATCCGTACCGGAGCGCTAGCTCGCCGCGCCCCCCAGAGCCAGCCCGACCAAAAGGACACCCCTGACGAGCCCTATGCCTTCCAGGCCAGAGAGTTCCTGCGCAAGATGCTGATTGGGAAGGAGGTATGCTTCACAGTGGAGGTCAAGACTGCTCTGGGCAGAGAATACGGCATGGTGTACCTGGGCAGAGacaccaCCGGTGAGAACATTGCTGAATCTCTGGTGAACGAGGGCCTCGCCACCGTCCGCAGGGAAGGAATCCGGGGCAACAATCCAGATCAGGCTAGACTGTGTGACCTGGAGGACCAGGCCAAGGCCTCCAAGAAGGGCATGTGGACGGAGGGCGGCGGCACCAACACTGTACGCGACCTCAAGTACATAATCGAGAACCCCCGCAACTTCGTTGACTCCATGCACCAGAAACCTGTCAATGCCGTCATTGAGCACGTGCGCGACGGTAGTGTGGTCCGTGCCCTGCTCCTGCCTGACTACTACCTGGTCACGGTCATGCTCTCTGGGGTCAAGTGTCCGACGTTCAAGCGTGAGGCGGACGGCACGGAGTCGCCAGAGCCCTTCGCTGCCGAGGCCAAGTTCTTCACGGAGTCGCGTCTGCTCCAGAGGGACGTGCAGATCATCCTGGAGAGCTGCCCCAACCAGGTCATCCTGGGTACCGTCCTCCACCCGAACGGGAATATCACAGAGCTGCTGCTGAAGGAAGGGTTTGCCCGCTGTGTGGACTGGTCCATGGCCGTCTACACCCAGGGGGCAGAGAAACTCCGGGCCGGAGAAAAATCTGCTAAAGAACGTAAAGTGCGTATCTGGAAGGACTACGTTGCCCCCACAGCCAACATGGACCAGAAGGACAGGCAGTTTGTGGCCAAGgtgATGCAGGTCGTCAATGCGGACGCCGTCGTGGTCAAGCTTAACTCTGGCGAGTACAAGACCATCCACTTGTCCAGCATCCGACCCCCCAGGATCGAGGGCGAGGAGAAGAACAAAGACAAAGACAAGCGTTTCCGTCCCATCTACGACATCCCCTACATGTTCGAGGCCCGCGAGTTCATGAGGAAGAAGATCATTGGCAAGAAGGTGAACGTCACGGTGGACTACATCAGAGCTGCCACCAGCTCCTCAGAGACCAGCACCATCCCCGCCTTTGCAGAACGCACCTGTGCCACGGTCACCATCGGCGGCATtaACATAGCCGAGGCGTTGGTCAGTAAAGGTTTTGCCACGGTCATCCGCTACAGACAGGATGATGACCAGCGCTCATCCCACTACGACGAGCTACTGGCTGCAGAGGCACGGGCAATCAAGAACGGGAAAGGGCTGCATAGCAAGAAGGAGGTTCCCATCCACAGAGTGGCTGATATCTCTGGGGAAACACAGAAGGCCAAGCAGTTCCTGCCTTTCCTCCAGAGAGCGGGCCGCTCAGAGGCGGTGGTAGAATACGTGTTCAGTGGCTCCCGCCTTAAACTCTACATGCCCAAAGAGACCTGCCTCATCACCTTCCTCCTCGCCGGTATCGAGTGTCCGCGCGGCTCCAGGAACATGCCCGGCGGCATGCAGGTGGCTGAGCCCTTCAGCGACGAGGCCATGGCCTTCACCAAGGAGCTGGTACTACAGAGAGAGGTGGAGGTGGAAGTAGAGAGTATGGACAAGGCTGGTAACTTCATCGGCTGGCTTCACATCGAGGGGGTTAACCTGTCGGTGGCGCTGGTAGAGAACGCCCTATCGAAGGTCCACTTCACGGCCGAGCGTAGCTCCTACTACAAGACCCTGGTATCCGGAGAGGAGGCCTCCCGTCTCAGGAAAGACAAGATCTGGGCCAACTATGAGGAGaagaaggtggaggaggtggtgcaCGTGATGGAGGAGAAAGAGCGCACAGCCAACTACAGAGCTGTATATGTCACTGAGATCACGGACACCATGCACTTCTACACCCAGGACgtggagacagGCACCCAGCTGGAGAACCTGATGGAGACCATGAGGGCAGAGATCGCCGCCCAGCCCCCAGTGGAGGGCTCGTACGCTGCCCGCCGAGGGGACTACTGCATCGCCAATTTCTCCGCGGACGGAGAGTGGTACAGAGCCCGGGTGGAGAAAGTTCAATCGCCAGCAAAGGTCCATGTGTTCTACATCGACTATGGCAACagggAGATAGTGCCGTCCACGCGCCTGGCTGTCATTCCCCCAGCTTTCAGCATTCGGACCCTGGCTGCACAAGCCACTGAGTACACCTTCGCCTACATCCAGGTCCCACAAGACGAGGATGCGCGTGCTGACGTGgtagacagcctggtgcgggacATCCAGAACACCCAGTGTCTCCTCAACGTGGAGCACAGCGGCGTCACCTGCCCCCATGTCACACTGCAGTTCGCCGACTCCAAGGACGACGTGGGCCTCAGCCTGGTCAAGGAGGGCATGGTCATGGTGGACGTGCGGAAAGAGAAGCACCTGCAGAAAATGgtgacgGAGTATCTCAACGGTCAGGAGTCTGCCAAGACTGCCAGGCTCAACATCTGGCGCTACGGAGACTTCCGCGACGACGACGCAGACGAGTTTGGCTACAAACTAAAAAAATGAAAAGCGCACCGTGCCATTCCAAAGACCAACGCGGAAGACGAGATGCACTCATTGGACGAGAAAAAGTGACAGAAAACGATTCAACGAAAATAAAACAAAGTAAAGGACAAGCAttgactctctctcttccttttatTCCATGTTCATCCTCCTGGTCCTCTCTCCTGCTACTCTGcacatcccttcctcctcctcccctctcctgctACTCTGCacatcctttcctcctcctcccctctcctgctACTCTGCACATCCCTTCCTCATCCTCCTGGTCCCCTCTCCTGCTACTCTGCACAtcccttcctcatcctcctcctcctctctcctgctactctgtacatcccttcctcctcctcctggtcctctctcctgctactctgtacatcccttcctcctcctcctggtccCCTCTCCTGCTACTCTGTacatcccttcctcctcctcctggtccCCTCTCCTGCTACTCTGTacatcccttcctcctcctcctggtccCCTCTACTGCTACTCTGcacatcccttcctcctcctcctcctccctccggaCTCTGAAAGAGCATACTATAGCTATGAACTCATAAAAACAGTGACTGTCCAATCCTTCCTCTTTTCCACCCTTCCTGAGCCACTACCAGTTGTTCTtatcatgtcccccccccccccccctgctgcaGAGCTCCGTTAATTACCATGTCATCCTTTCCTGATTAGTGATGTCATACGCCCACACTAATCATGCGCATCGCTACCTTACCCTATCCCTACCACAGCCAATCCCTCCTATCCGTTGTACAGGAAAGGGGCTAGGCCTTGAGAAGAGGATCCATTCACTTTTATTATTAACAGCTTTTTGCAGAGAGAAACGCTTCCTTAATGAATGACAAGAAATGAATAATGCTATGTTTTATGAAGTTAATTTTAAAAAGCTAGCTCGAGATCCACACCAACCGGACAAGCTTATTTCTGTCCTTGATGTATACCTATGTGATATGACATTTAATGACGTTTATGTTGGGAGTGTTTTATTCTCGtctttcttcttctccctctctctctcgtggcCAGAACACCTTGACAAACAGCATtttctcatcttcctcctccctctttctgtaatgtttacatatgatggtgacatgatgatctctgtctctctctctctctgtctctgtatgccgTAGCAGAAACAGTGTTTGGATTTGTTTCCTTATGACAGCCCTTGTCATTGTATTAAAAAATTCTGCTGAATAAAAATGAGCAAATGATTAAAAAGAA

Function

symbol description
snd1 Predicted to enable RNA binding activity and nuclease activity. Predicted to be involved in RNA catabolic process. Predicted to act upstream of or within gene silencing by RNA. Located in cytoplasm. Orthologous to human SND1 (staphylococcal nuclease and tudor domain containing 1).

NR:

description
PREDICTED: staphylococcal nuclease domain-containing protein 1

GO:

id name namespace
GO:0031047 gene silencing by RNA biological_process
GO:0016442 RISC complex cellular_component
GO:0016788 hydrolase activity, acting on ester bonds molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K15979 SND1; staphylococcal nuclease domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944950.1 True 4221 mRNA 0.54 24 64018813 64387969

Neighbor

gene id symbol gene type direction distance location
LOC118938928 NA coding downstream 475696 63542691 ~ 63543117 (-)
lepb lepb1 coding downstream 581276 63436440 ~ 63437537 (-)
prrt4 LOC106576496 coding downstream 652131 63327987 ~ 63366682 (-)
LOC118938824 NA coding downstream 700527 63317760 ~ 63318286 (-)
LOC110490581 NA coding downstream 730685 63286367 ~ 63288128 (-)
hgfa LOC105020379 coding upstream 24076 64412045 ~ 64457130 (-)
LOC110499867 LOC106576572 coding upstream 93947 64481916 ~ 64636502 (-)
LOC110517721 LOC106590767 coding upstream 318128 64706097 ~ 64709084 (-)
LOC110513474 NA coding upstream 554449 64942418 ~ 64946166 (-)
LOC110511498 NA coding upstream 572209 64960178 ~ 64998613 (-)
G1317369 NA non-coding downstream 126337 63892263 ~ 63892476 (-)
G1317342 NA non-coding downstream 175994 63842519 ~ 63842819 (-)
G1317316 NA non-coding downstream 213231 63805336 ~ 63805582 (-)
G1317279 NA non-coding downstream 282333 63736271 ~ 63736480 (-)
G1317273 NA non-coding downstream 292323 63726189 ~ 63726490 (-)
G1318246 NA non-coding upstream 2493 64390462 ~ 64390747 (-)
G1318247 NA non-coding upstream 7520 64395489 ~ 64395694 (-)
G1318264 NA non-coding upstream 40115 64428084 ~ 64428402 (-)
G1318265 NA non-coding upstream 40699 64428668 ~ 64428969 (-)
G1316904 LOC106609576 other downstream 730909 63256527 ~ 63287904 (-)
G1316451 NA other downstream 1114131 62902859 ~ 62904682 (-)
LOC110490571 LOC106596632 other downstream 1251314 62754956 ~ 62767499 (-)
G1316323 NA other downstream 1481343 62534288 ~ 62537470 (-)
G1316178 NA other downstream 1754783 62257098 ~ 62264093 (-)
G1318477 NA other upstream 680308 65068277 ~ 65153287 (-)
G1318935 NA other upstream 1081998 65469967 ~ 65473164 (-)
G1319357 LOC106593594 other upstream 1891076 66279045 ~ 66282108 (-)
LOC110490781 LOC106576552 other upstream 2420478 66808409 ~ 66920061 (-)

Expression


Co-expression Network