LOC110490817 (LOC106576481)


Basic Information

Item Value
gene id LOC110490817
gene name LOC106576481
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 64222084 ~ 64227831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564266.2
CActtctctccgtccctctctccatctctccttcacttctctctgtccctctcaacAGTAGACCATCTCCCGCCATCCAGTCCTCAAAATGTCCCAGGGCCCAGAGTGCACATGTGCacgcgcacacacccacacacacgtcaGGGAGGATACACTCACTCTACATTGACCTTCTGAcaggaggacggagagagagagagagagcaattggGGAGAGAAAAAATATGAATAGACAGGCAAAcgaggagagagagcaaaggcTTGAGTGAGACTGGCgagaagaggaacagggagaggggagaggaggagcgagagagagcaagaaatagggagagagagaaagaaagagaaggagagagtggatTAGTTAATGCACAAAAACACTGCATCAAACCAATGCACTGCTCCGAGCGGGATGCGTCAGCAGTACATTCACGTTCCCCACTCAAGgacaaaagagaaagagagagagcaacagagtgAACAAGCGAATGAAAGAGTGagtaaacgagagagagagagagagagagagagagagcagccttgCACCACACTGGCACCAGAAAAACGTGCCGGAATAACCTGAGCAGCAGGATTAACACCGGGGCTGCAGGGGTTAAAATTGTGTTGCCGTGGGGACACGCTGCCGTTTTCTCCAGTTCACCTGGGCAGCGCTTTATTCTCCTCTAAAccagggagccagagagagaaacaagaaggACAGTGGAAGCTAACACGGTTGAGAGGCTTCGCGCTGGCACACACAAAGGACTGAGTGCTTTGAGCTTGGCCACTACCTCAGGACACTGCAGGGGatgagaagagcgagagagggggagagagagaaagagatacacaTCCCCGCTCTCGCTCATCTGCTGCTACAGCGGATCTGTTTTCCTCATCGATGCTGCTGTAACATCCTGTGCCCCGCTCGGCTCTCTCTTGCTTCACTCTCCTATTCTGCCGCGCGGTGAAGAAAAAAAGGGATTGAAAACAGGAGCGAGAAAGAGACCGAGGGAGATGGCGCTTTAGCCTCTTTTTGCTGTGCTGATATTGCTGCTGAATCTACTCTACGCCCCCCACCTCTCTCAACCCTGCTACTAACCCCCACCCACCCTCGGAAGAAATTGACGGATTATTGGGAAGTGCGCGGGAGGCAGGCtgcagctgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagcgccgCTGCTGGCGAGCCGTGTTTGCGTGCTGCTGTGCTGGAGCGCAGAGCTAGTTAAGAGGAGAAATAAGCTAATGACCGCAGTGTGTGTCGCGTAGCCTTTTCAACCCTGCCGAGCGCTACAGAAATCAAGTGGACACGAcgcgacacacagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagggtggactgACTGACCACCAAAAAATAGAAAGAGCCAAGAAAAGGGGTCCTGTTTCCCCCCCACCTCAAAGAAAATTTGAAAGGACTGGAATTTTTCTTCTTCCTCCTTAAACCCCCACCCATTTTCTGCCTTGGGTTTTCAGAGTGCGGAGTGTGTGTGTCGGTGAGTACGCGTTTGTGCTATGGAGACTTGGAGAAGGCGTTCGGCGGAAACATCGAGCGGCGGATTCCAAGGACAAGCGGGAGAAGAGCAGCCGAGAGCGAGCGAGCGTGTACTGCTATAGGAGCCTGACTGGATTCCTACCCATCTAAAACATAAGCTTCGGATGGGCCTTCACATCTTTTCCTTCTTCGGATGATGTTCGCTTGTGTGGAATTATAAAAAAGGGGCCATTTTGGCAAAGAATCTTCACTTCATTTGCTTCTAACAGAGCAGAAAGAAAAGTCTTTATTTCTCTGCTCCTTGGATATATACCTGATTTAAACACTCTGTGATTGACAAAAAAAGAGAAAACAATCTCGTAAggacctgtaaaaaaaaaagcttgAGGTAGGTGTCTAGAGTTTCCAACCCTATTTCAATCATCTCCATCTCCTATTCTATTATTTTTTTATCTTTCTCTGaaacatttaagagcagttgtccTCCCCCCTCCAGTAGTGTCCATGGAAAAGAGAGCCAGAGTTTTGCTTAATCCGGGGTAGGGCCAGCCCTCTCCTGGTTACTCAAGAaccaacccccctccctcccctctttatacctcacccctcctcccactTTCGACCACCAACCCATTCAACCAACcaaccgaccccccccccccccccccccccccccccccccccccccaaccccacctCCGGCCCTCTCCCCCCCCGGACGATGCTGAATTATGAGCGTGCCACATCATGAGTCTCCTGGGGCGGGTAGCTGTGCGTCGAGCCACCCTGCTCTGTGTTGTGTTCCTGATGGCGCGAGTGTGGAGCAGCGCCTCTCTGGCTATGGCGGGGGCGGCAGCGCCAGGCCCTCAGGGCTGCCCACCGCAGTGCTCGTGTAGTAGCCAACTGAGCAAGGTGGTGTGCACTCGGCGCGGCCTCACTCGCGTGCCCCCGGGCATCCCCGCCAACACGCGCCACCTCAACCTGATGGAGAATGCCATTGGAGAGGTGCAAGCCGACACCTTCCGACACCTGCACCACCTTGAGGTTCTGCAGCTGGGCCGCAACGCCATCCGGCAGATCGAGGTGGGCGCCTTCAATGGCCTCACCAGCTTAAACACGCTGGAGCTATTTGACAACCGGCTAACTGGGGTGCCCAGTGGTGCCTTTGAGTACCTGTCCAAGCTCAGGGAATTATGGCTGAGGAATAACCCCATCGAGAGCATCCCTTCGTATGCCTTCAACCGAGTGCCCTCGCTCATGCGTTTGGACCTGGGCGAGCTGCGCAAGCTGGATTTCATCTCCGATGGCGCCTTTGAGGGCCTGCACAACCTCAAGTACCTCAACCTGGGCATGTGCAACATCCGGGGGGAGATGCCCAATCTGAGCCCCCTGCTGGGCCTGGAGGAACTGGAGATCTCGGAGAACCTTTTCTCCGAAATCAAGCCAGGCTCCTTCCGGGGCCTGCGCTCACTCAAGAAGCTGTGGGTGATGAATTCGCAGATTGGGGTGATCGAGCGCAACGCCTTTGACGACCTGAGCTCGCTGGTGGAGCTCAACCTAGCCCACAACAACCTGAGCGCCCTGCCACACGACCTGTTCTCCCCCCTCAGGTACCTGGTGGAACTGCACCTCCACCACAACCCCTGGAACTGTGGCTGTGAAGCCCTGTGGCTGGCACGCTGGCTGCGAGAGTACATCCCTACCAATTCTACCTGCTGTGGCCGATGCCACGCGCCGGCCCACATGCGGGGCCGCCAGCTGGTGGAGGTGGACCGGGGGGAGACCGGCGTGCTCCAGTGCTCTGCCCCCTTCATAGGCGATGCGCCAAGAGACTTAAACATTTCGGCAGAGCGCGTAGCGGAGCTCCGTTGCCGGACTGCGCCAATGTCCTCGGTCCGGTGGCTGCTGCCCAATGGGACCATCCTGACGCATGCCTCGGCCCACCAGCGGATCGCCGTGCTCAACGACGGCACGCTCAACTTCTCCAACGTGCTGGCGGCTGACACAGGCACCTACACCTGCATGGTATCCAACGCGGCCGGCAACTCAAACGCCTCGGCCTACCTCAACGTGAGCGCGGCTGAACTCAACACGTCCAACCTCAGCTACTTCACCACAGTGACCGTGGAAGTGCCGGGACCTACCACGGAGATGCCCAAGCCCAAGACCACAACGAGCGCCCCTAACACTGGTAGGGGGGCAGgaggagaagcaggaggagacgctggcaccaccaccaccgcctcGCCCTCCCTCTTTCAGCCCGTCTTCATCTCTACTCCCACCGTTCTGCTCCAGAACACCGAGGGCCAGCCAGGCGCCCGACCGTCCGCCGTTCCTGCCTCCAAGTCCGCCACGGTCAAGCCACCCGACACAGTCCCCAGCCTGGACGAGATGATGAAAACCACCAAGATCATCATCGGCTGCTTCGTAGCCGTCACGCTACTGGCCGCCGTCATGCTCATCGCCTTCTACAAGCTGAGGAAGCGCCACCAGCAGCGGAGCACAGTGGCAGCCACCCGTACAGTAGAAATCATCCAGGTGGACGAGGAGGACCTGCCGCCGCCTGCTTCGGCTGCCAACCAGATCCGAGACCACAACAGCATCCAAAAACTGGATTATATCAGCCACAAAACAGACTATGGCTTCCCCAAACCCAAAGCCGACTACAAGGGGGACTACACAATCCACATGCCCAAACCAGACTACATTATACACAAGCCCAAGGCTGAGTACACCACCTACAAACCAACCGtggactacactacccacaaaTCTACAGTGGAATATAGCACCCACAAATCTACACCAGATTTTAGCCTTCATAGACCAAAGGCTGACTATAGCCCGTTCAGACCGGAATATAGCACTCACAAGCAGCCTAAAGCAGACTATAGCCCCTTCAAACCTGACTACAGTACTCACCCGAGAACACCTAAAGCAGATTATAGCCCATTCAAACCGGATTATAGCAGTAGTACTCACCCGAGAACACCTAAAGCAGATTATAGCCCCTTCAAACCGGATTATGGCACTCATCCAAAACCCAAACCGGACTATAGCCCATTCAAACCTGACTACAGCACTCACCCACGACCTAAACCAGACTACAGCCCTTACAAACCTGACTACAGCACTCAGTCCAAATCCAAACCGGAGTACAGTACACACAAATCCAAACCCGACAACAGTCAATACAAACCCAAATCAGAACACACCCCCAAGGGCGCGCCGGACTACATCGTCTTCAAATCAGGCTACAACAGCCCCCACAAACAGGATTATGGCAACCAGAAACCCAAAATGGATTCCAGTCCCCACAAAGCAGACCATCACAAGGTGGACTACCGCACCCTCAAGCCCAAATACAACACGTACAAGCCAGCAGGACATGGGGCTAAATGGACAGAGAACAACATTGGGAACTCTCTCCCTCGAACCTTGCCCAGCGCCATCACAAACCTCCCTGAGCCCTTTGTCATAAAAACTCACACCAAGGAGAAGGTTCAGGAGACTCAGATTTAAAGCCCCCCACAcaaccccccacccaccccccaggCAAGTCCCAATCCCCATAGCCACCCCTCTCTTCTCATAACTACATGCAATAGAATGCACAACGGGGGAAAAGACAGGAACTTTCTTTTTTGTACAGAGTGCAAAACTTAAAGACTGAACATTTCTTGTTGTACATGCTTATAAATAAATCTATATATGAAACTATTGAAAGTACCATGGACTGGTGATAGAGAAGCATattatattaaaaataaatacattgaaaCTATTTTCTAACTTGTAACTTCTATTTAAAAAGACGAGTTGTTTAACATACTGTCTTGACTTTGAGAAATGAGGGTAGActtgttaaaataaaaaaaaaagaggcaTTCTGTGTGATTTTTTAAAAAAACCAATGCTACAGAGAATGCAGTGAAAAGAGAAAAAACATTTATACTGAGAAGACTTtctttaagaaaaaaaaaaggtcAGTGTTTGATCTTTACAGGTTTATCTTGTAAAAGCACCATGAATTTGTATTGTGCCAAATGTTACAAATgcaataaaaaatgatttttggagagagaaaaaaa

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564266.2 True 5748 mRNA 0.53 1 64222084 64227831
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110490585 LOC106609575 coding upstream 814400 63383215 ~ 63407684 (+)
LOC110490586 LOC106609575 coding upstream 836336 63383366 ~ 63385748 (+)
impdh1b LOC106576497 coding upstream 894268 63298348 ~ 63327816 (+)
LOC110490575 LOC106609039 coding upstream 1371792 62844136 ~ 62850292 (+)
scyl2 scyl2 coding upstream 1405250 62792914 ~ 62816834 (+)
pax4 LOC106576509 coding downstream 178235 64406007 ~ 64408064 (+)
LOC118938929 LOC106576509 coding downstream 181082 64408913 ~ 64410363 (+)
LOC110499870 NA coding downstream 316304 64544135 ~ 64552715 (+)
LOC110510792 wnt5b coding downstream 474950 64702781 ~ 64824029 (+)
LOC110517608 LOC101268929 coding downstream 611320 64839151 ~ 64929593 (+)
G1317562 NA non-coding upstream 28709 64192823 ~ 64193375 (+)
G1317517 NA non-coding upstream 29751 64118575 ~ 64192333 (+)
G1317512 NA non-coding upstream 109365 64111876 ~ 64112719 (+)
G1317491 NA non-coding upstream 142775 64078796 ~ 64079309 (+)
G1317483 NA non-coding upstream 162788 64058874 ~ 64059296 (+)
G1317588 NA non-coding downstream 28845 64256676 ~ 64258221 (+)
G1317602 NA non-coding downstream 33177 64261008 ~ 64265925 (+)
G1317616 snd1 non-coding downstream 51347 64279178 ~ 64387939 (+)
G1317673 NA non-coding downstream 161361 64389192 ~ 64389403 (+)
G1317679 NA non-coding downstream 169673 64397504 ~ 64397770 (+)
G1317320 NA other upstream 407715 63813840 ~ 63814369 (+)
G1316007 LOC100301653 other upstream 1289562 62921704 ~ 62932522 (+)
G1315860 NA other upstream 1606897 62614795 ~ 62615187 (+)
LOC110490567 anks1b other upstream 1746570 62231272 ~ 62589732 (+)
G1317674 LOC106613263 other downstream 161775 64389606 ~ 64390097 (+)
G1317686 LOC106576509 other downstream 179178 64407009 ~ 64410034 (+)
G1317968 NA other downstream 932145 65159976 ~ 65179127 (+)
LOC110518394 LOC107732972 other downstream 1063971 65291802 ~ 65866042 (+)
G1318650 NA other downstream 1211587 65439418 ~ 65440249 (+)

Expression

LOC110490817(LOC106576481) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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LOC110490817(LOC106576481) Expression in each Bioproject

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LOC110490817(LOC106576481) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network