Gene
RNA
| Item | Value |
|---|---|
| gene id | pax4 |
| gene name | LOC106576509 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 64406007 ~ 64408064 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: LOW QUALITY PROTEIN: paired box protein Pax-4-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021578514.2 | False | 1041 | mRNA | 0.49 | 7 | 64406066 | 64408064 |
| TU1503388 | True | 211 | lncRNA | 0.32 | 1 | 64406007 | 64406217 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110490817 | LOC106576481 | coding | upstream | 178235 | 64222084 ~ 64227831 (+) |
| LOC110490585 | LOC106609575 | coding | upstream | 998382 | 63383215 ~ 63407684 (+) |
| LOC110490586 | LOC106609575 | coding | upstream | 1020318 | 63383366 ~ 63385748 (+) |
| impdh1b | LOC106576497 | coding | upstream | 1078250 | 63298348 ~ 63327816 (+) |
| LOC110490575 | LOC106609039 | coding | upstream | 1555774 | 62844136 ~ 62850292 (+) |
| LOC118938929 | LOC106576509 | coding | downstream | 849 | 64408913 ~ 64410363 (+) |
| LOC110499870 | NA | coding | downstream | 136071 | 64544135 ~ 64552715 (+) |
| LOC110510792 | wnt5b | coding | downstream | 294717 | 64702781 ~ 64824029 (+) |
| LOC110517608 | LOC101268929 | coding | downstream | 431087 | 64839151 ~ 64929593 (+) |
| LOC110514055 | LOC106575063 | coding | downstream | 684532 | 65092596 ~ 65150082 (+) |
| G1317679 | NA | non-coding | upstream | 8296 | 64397504 ~ 64397770 (+) |
| G1317673 | NA | non-coding | upstream | 16663 | 64389192 ~ 64389403 (+) |
| G1317616 | snd1 | non-coding | upstream | 18127 | 64279178 ~ 64387939 (+) |
| G1317602 | NA | non-coding | upstream | 140141 | 64261008 ~ 64265925 (+) |
| G1317588 | NA | non-coding | upstream | 147845 | 64256676 ~ 64258221 (+) |
| G1317689 | NA | non-coding | downstream | 5153 | 64413217 ~ 64413753 (+) |
| G1317688 | NA | non-coding | downstream | 6322 | 64414386 ~ 64414575 (+) |
| G1317695 | NA | non-coding | downstream | 20996 | 64429060 ~ 64429555 (+) |
| G1317697 | NA | non-coding | downstream | 24509 | 64432573 ~ 64432883 (+) |
| G1317699 | NA | non-coding | downstream | 25583 | 64433647 ~ 64433907 (+) |
| G1317674 | LOC106613263 | other | upstream | 15969 | 64389606 ~ 64390097 (+) |
| G1317320 | NA | other | upstream | 591697 | 63813840 ~ 63814369 (+) |
| G1316007 | LOC100301653 | other | upstream | 1473544 | 62921704 ~ 62932522 (+) |
| G1315860 | NA | other | upstream | 1790879 | 62614795 ~ 62615187 (+) |
| G1317968 | NA | other | downstream | 751912 | 65159976 ~ 65179127 (+) |
| LOC110518394 | LOC107732972 | other | downstream | 883738 | 65291802 ~ 65866042 (+) |
| G1318650 | NA | other | downstream | 1031354 | 65439418 ~ 65440249 (+) |
| G1318642 | NA | other | downstream | 1067912 | 65475976 ~ 65486232 (+) |
| G1318681 | NA | other | downstream | 1109638 | 65517702 ~ 65519728 (+) |
| G1317686 | LOC106576509 | other | downstream | 792 | 64407009 ~ 64410034 (+) |
