LOC118938929 (LOC106576509)


Basic Information

Item Value
gene id LOC118938929
gene name LOC106576509
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 64408913 ~ 64410363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036323.1
atcacccagaaaatgtaCCTCTGTTGGTATCACATACATGATCAAACATTTGacacgttatccagatactgactgttagcagttggtggtctgtagcagtttgagagagagaataacagttCATTTTTCTTTCAAAAGTTTCATTTCTGATGAACCAAAAGAACAAAGATTTCCCTTCAGTGAACTCGATGACAACAACCAACTCAATGACTCAACAGACTCACTGGGGTCAGAGGGAGAGTTTGGGAGTACAGTTTGACACTTCATGCTCAGAAATCTCCCAGAGATATGGTCCAGCTACTACAATAGAGAGAGgaataggaggaacagaaGTGTTGGGCTATAGAGGCATCTCCATTCCACTTCCATCCTCAGCATCTCAATACTCAGGCAGCACCATGTTCCCATTGGTCCATCCCCAGGACGAGAGGACTCCATCGGCTCACCATGCAGAGAGATTCATTTTCCCATTGGCTCATCATTACACAGACGTGAGGACAGTCTTCTCATTGGCTCATCAGACTGAGAGGATGGGACATTCACTGAACTATCATTGGGATGATGGGTCAGATTTCCAATTTTCTCATCACCAAACAGATGAAAGGATTCTATTGGCTCATCACAGGGAGAGGACTGGTGGTCCATCGCTTATATGACAGAatgtctctccccttttctcgcatcagtgaatgtcagagccaaacattctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacccctctatgGCTCTGTTGATTACTACTGGGCAGGGTATGCAATAGAGTGGGTACAGAGACATTCCAATCGTGACCTAATGTGTTTAAAATGAAATTTCTACAGGCTATTGCAACATATCTCAGTGAAA

Function

NR:

description
PREDICTED: paired box protein Pax-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036323.1 True 956 mRNA 0.45 3 64408913 64410363

Neighbor

gene id symbol gene type direction distance location
pax4 LOC106576509 coding upstream 849 64406007 ~ 64408064 (+)
LOC110490817 LOC106576481 coding upstream 181082 64222084 ~ 64227831 (+)
LOC110490585 LOC106609575 coding upstream 1001229 63383215 ~ 63407684 (+)
LOC110490586 LOC106609575 coding upstream 1023165 63383366 ~ 63385748 (+)
impdh1b LOC106576497 coding upstream 1081097 63298348 ~ 63327816 (+)
LOC110499870 NA coding downstream 133772 64544135 ~ 64552715 (+)
LOC110510792 wnt5b coding downstream 292418 64702781 ~ 64824029 (+)
LOC110517608 LOC101268929 coding downstream 428788 64839151 ~ 64929593 (+)
LOC110514055 LOC106575063 coding downstream 682233 65092596 ~ 65150082 (+)
LOC110518394 LOC107732972 coding downstream 894338 65291802 ~ 65866042 (+)
G1317679 NA non-coding upstream 11143 64397504 ~ 64397770 (+)
G1317673 NA non-coding upstream 19510 64389192 ~ 64389403 (+)
G1317616 snd1 non-coding upstream 20974 64279178 ~ 64387939 (+)
G1317602 NA non-coding upstream 142988 64261008 ~ 64265925 (+)
G1317689 NA non-coding downstream 2854 64413217 ~ 64413753 (+)
G1317688 NA non-coding downstream 4023 64414386 ~ 64414575 (+)
G1317695 NA non-coding downstream 18697 64429060 ~ 64429555 (+)
G1317697 NA non-coding downstream 22210 64432573 ~ 64432883 (+)
G1317699 NA non-coding downstream 23284 64433647 ~ 64433907 (+)
G1317674 LOC106613263 other upstream 18816 64389606 ~ 64390097 (+)
G1317320 NA other upstream 594544 63813840 ~ 63814369 (+)
G1316007 LOC100301653 other upstream 1476391 62921704 ~ 62932522 (+)
G1315860 NA other upstream 1793726 62614795 ~ 62615187 (+)
G1317968 NA other downstream 749613 65159976 ~ 65179127 (+)
G1318650 NA other downstream 1029055 65439418 ~ 65440249 (+)
G1318642 NA other downstream 1065613 65475976 ~ 65486232 (+)
G1318681 NA other downstream 1107339 65517702 ~ 65519728 (+)

Expression


Co-expression Network