Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110510792 |
| gene name | wnt5b |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048579.1 |
| NCBI id | CM023233.2 |
| chromosome length | 81569517 |
| location | 64702781 ~ 64824029 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| wnt5b | Enables signaling receptor binding activity. Involved in muscle cell differentiation; positive regulation of convergent extension involved in gastrulation; and positive regulation of non-canonical Wnt signaling pathway. Acts upstream of or within with a positive effect on midbrain-hindbrain boundary morphogenesis. Acts upstream of or within several processes, including animal organ development; convergent extension; and vasculature development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including central nervous system; cranial cartilage; fin; germ ring; and mesoderm. Human ortholog(s) of this gene implicated in autosomal dominant Robinow syndrome 1. Orthologous to several human genes including WNT5B (Wnt family member 5B). |
| description |
|---|
| PREDICTED: protein Wnt-5b |
| id | name | namespace |
|---|---|---|
| GO:0009826 | unidimensional cell growth | biological_process |
| GO:0002574 | thrombocyte differentiation | biological_process |
| GO:0031018 | endocrine pancreas development | biological_process |
| GO:0030182 | neuron differentiation | biological_process |
| GO:0045165 | cell fate commitment | biological_process |
| GO:0051209 | release of sequestered calcium ion into cytosol | biological_process |
| GO:0002062 | chondrocyte differentiation | biological_process |
| GO:0001525 | angiogenesis | biological_process |
| GO:0010172 | embryonic body morphogenesis | biological_process |
| GO:0048840 | otolith development | biological_process |
| GO:0048884 | neuromast development | biological_process |
| GO:0031101 | fin regeneration | biological_process |
| GO:0008591 | regulation of Wnt signaling pathway, calcium modulating pathway | biological_process |
| GO:0061053 | somite development | biological_process |
| GO:0060028 | convergent extension involved in axis elongation | biological_process |
| GO:0060030 | dorsal convergence | biological_process |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005622 | intracellular anatomical structure | cellular_component |
| GO:0005109 | frizzled binding | molecular_function |
| id | description |
|---|---|
| K00444 | WNT5; wingless-type MMTV integration site family, member 5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036944956.1 | True | 1855 | mRNA | 0.55 | 5 | 64702781 | 64824029 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499870 | NA | coding | upstream | 150066 | 64544135 ~ 64552715 (+) |
| LOC118938929 | LOC106576509 | coding | upstream | 292418 | 64408913 ~ 64410363 (+) |
| pax4 | LOC106576509 | coding | upstream | 294717 | 64406007 ~ 64408064 (+) |
| LOC110490817 | LOC106576481 | coding | upstream | 474950 | 64222084 ~ 64227831 (+) |
| LOC110490585 | LOC106609575 | coding | upstream | 1295097 | 63383215 ~ 63407684 (+) |
| LOC110517608 | LOC101268929 | coding | downstream | 15122 | 64839151 ~ 64929593 (+) |
| LOC110514055 | LOC106575063 | coding | downstream | 268567 | 65092596 ~ 65150082 (+) |
| LOC110518394 | LOC107732972 | coding | downstream | 480672 | 65291802 ~ 65866042 (+) |
| LOC110518243 | NA | coding | downstream | 1044284 | 65868313 ~ 65875835 (+) |
| LOC118938897 | NA | coding | downstream | 1170212 | 65994241 ~ 65995572 (+) |
| G1317811 | NA | non-coding | upstream | 1800 | 64699189 ~ 64700981 (+) |
| G1317795 | NA | non-coding | upstream | 9987 | 64637930 ~ 64692794 (+) |
| G1317755 | NA | non-coding | upstream | 156554 | 64545611 ~ 64546227 (+) |
| G1317738 | NA | non-coding | upstream | 192919 | 64509550 ~ 64509862 (+) |
| G1317736 | NA | non-coding | upstream | 195998 | 64506584 ~ 64506783 (+) |
| G1317814 | NA | non-coding | downstream | 192 | 64824221 ~ 64826099 (+) |
| G1317863 | NA | non-coding | downstream | 3040 | 64827069 ~ 64827345 (+) |
| G1317867 | NA | non-coding | downstream | 8738 | 64832767 ~ 64833139 (+) |
| G1317868 | NA | non-coding | downstream | 10318 | 64834347 ~ 64834613 (+) |
| G1317870 | NA | non-coding | downstream | 17918 | 64841947 ~ 64842234 (+) |
| G1317686 | LOC106576509 | other | upstream | 292747 | 64407009 ~ 64410034 (+) |
| G1317674 | LOC106613263 | other | upstream | 312684 | 64389606 ~ 64390097 (+) |
| G1317320 | NA | other | upstream | 888412 | 63813840 ~ 63814369 (+) |
| LOC110490586 | LOC106609575 | other | upstream | 1317599 | 63383366 ~ 63385748 (+) |
| G1316007 | LOC100301653 | other | upstream | 1770259 | 62921704 ~ 62932522 (+) |
| G1317968 | NA | other | downstream | 335947 | 65159976 ~ 65179127 (+) |
| G1318650 | NA | other | downstream | 615389 | 65439418 ~ 65440249 (+) |
| G1318642 | NA | other | downstream | 651947 | 65475976 ~ 65486232 (+) |
| G1318681 | NA | other | downstream | 693673 | 65517702 ~ 65519728 (+) |
