LOC118938827 (LOC106576471)


Basic Information

Item Value
gene id LOC118938827
gene name LOC106576471
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65021405 ~ 65058643 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944969.1
ctttcttaggACCTGGCCTGCTACCTCATCGACAGCAATGCTTTCATAATCATCTCCAAAGAAAAAAGCCATGTGGGGAGGTTCTTTGGAGAAGTTGACGGCTCAGTGATGGCACGCCTTATCAAGATGGGCATGTTCAAAAGggTATCTCTGTACGACTATCAGGCCATGTGTAAGATGGGAGGACATTCTGCCAGCAGCGCCAGACCCCTTCTTAGTccCTTCTATGGTCTGGCGGCTGCTCTAAAGTGGTTCCTCACCAACTTCCTGCTGTTTTTACTGGAGTTCAACATCTGTGGTCTCTGGCACTCTGACCGCTTTGCTGAAGCCAAGCCTGGCTTCAAAGCGTCGGCCCAGAAGAAGAAGGGAGACATCCTGCAGCCGTGTGACACAGAGTACCCCAGCTTTGTCTACGAGCCCTCCATCAAGGAGACCAACAGCCTCATTAAGTGTGGACGCTGTcagaagatgTTTGTAACCCAGGCTGTCCCTGACAGTAACCTGCTGATGTTGGTGGTACAGGCAGACTGTGACTGTTCCCGTCAGTACCCCGCTATCACCATGGAACCCAAGGAAGTGAAATATATCCTTTAACATGAAGAGCTATCTTACTGGTTCACTCTCTCTGACACAGACAGTGATTGATATAATTATAATGGTGTTGTGGA

Function

NR:

description
PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944969.1 True 668 mRNA 0.49 8 65021405 65058643

Neighbor

gene id symbol gene type direction distance location
LOC118938826 NA coding downstream 6994 64995972 ~ 65014411 (-)
LOC110510812 NA coding downstream 20426 64997957 ~ 65000979 (-)
LOC110511498 NA coding downstream 36156 64960178 ~ 64998613 (-)
LOC110517607 NA coding downstream 55595 64962542 ~ 64965810 (-)
LOC110513474 NA coding downstream 75239 64942418 ~ 64946166 (-)
LOC110513258 cacna2d4 coding upstream 94740 65153383 ~ 65231663 (-)
LOC110517393 LOC106576623 coding upstream 210347 65268990 ~ 65303134 (-)
LOC110512490 LOC106592130 coding upstream 819367 65878010 ~ 65892365 (-)
LOC110511373 LOC106592131 coding upstream 833805 65892448 ~ 65898819 (-)
LOC110511371 LOC106597280 coding upstream 843099 65901742 ~ 65979435 (-)
G1318458 NA non-coding downstream 7420 64939624 ~ 65013985 (-)
G1318465 LOC106576470 non-coding downstream 14990 64990791 ~ 65006415 (-)
G1318451 NA non-coding downstream 51910 64953292 ~ 64969495 (-)
G1318457 LOC106576469 non-coding downstream 66317 64938188 ~ 64955088 (-)
G1318488 NA non-coding upstream 25453 65084096 ~ 65084339 (-)
G1318491 NA non-coding upstream 31489 65090132 ~ 65091285 (-)
G1318498 NA non-coding upstream 40888 65099531 ~ 65103149 (-)
G1318499 NA non-coding upstream 42057 65100700 ~ 65102103 (-)
G1318515 NA non-coding upstream 75009 65133652 ~ 65134102 (-)
LOC110499867 LOC106576572 other downstream 536087 64481916 ~ 64636502 (-)
G1318164 LOC106576481 other downstream 793730 64216504 ~ 64227675 (-)
G1318092 NA other downstream 937517 64083037 ~ 64083888 (-)
G1316904 LOC106609576 other downstream 1733501 63256527 ~ 63287904 (-)
G1316451 NA other downstream 2116723 62902859 ~ 62904682 (-)
G1318477 NA other upstream 9634 65068277 ~ 65153287 (-)
G1318935 NA other upstream 411324 65469967 ~ 65473164 (-)
G1319357 LOC106593594 other upstream 1220402 66279045 ~ 66282108 (-)
LOC110490781 LOC106576552 other upstream 1749804 66808409 ~ 66920061 (-)
G1319781 LOC106576551 other upstream 1797536 66856179 ~ 66862281 (-)

Expression


Co-expression Network