Item | Value |
---|---|
gene id | LOC110514055 |
gene name | LOC106575063 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048579.1 |
NCBI id | CM023233.2 |
chromosome length | 81569517 |
location | 65092596 ~ 65150082 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
collagen alpha-1(II) chain-like |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036944968.1 | False | 3505 | mRNA | 0.53 | 4 | 65092596 | 65148702 |
XR_005036191.1 | False | 3455 | mRNA | 0.53 | 5 | 65092596 | 65148702 |
TU1503723 | False | 2793 | lncRNA | 0.45 | 5 | 65146851 | 65150082 |
TU1503724 | True | 1145 | lncRNA | 0.42 | 4 | 65148389 | 65150082 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110517608 | LOC101268929 | coding | upstream | 163005 | 64839151 ~ 64929593 (+) |
LOC110510792 | wnt5b | coding | upstream | 268567 | 64702781 ~ 64824029 (+) |
LOC110499870 | NA | coding | upstream | 539881 | 64544135 ~ 64552715 (+) |
LOC118938929 | LOC106576509 | coding | upstream | 682233 | 64408913 ~ 64410363 (+) |
pax4 | LOC106576509 | coding | upstream | 684532 | 64406007 ~ 64408064 (+) |
LOC110518394 | LOC107732972 | coding | downstream | 155999 | 65291802 ~ 65866042 (+) |
LOC110518243 | NA | coding | downstream | 719611 | 65868313 ~ 65875835 (+) |
LOC118938897 | NA | coding | downstream | 845539 | 65994241 ~ 65995572 (+) |
LOC110499703 | tcpb | coding | downstream | 861169 | 66009871 ~ 66018682 (+) |
LOC118938981 | NA | coding | downstream | 866580 | 66015282 ~ 66015423 (+) |
G1317933 | NA | non-coding | upstream | 19592 | 65072647 ~ 65073004 (+) |
G1317908 | NA | non-coding | upstream | 74868 | 64959871 ~ 65017728 (+) |
G1317912 | NA | non-coding | upstream | 91022 | 64945947 ~ 65001574 (+) |
G1317916 | NA | non-coding | upstream | 100947 | 64971838 ~ 64991649 (+) |
G1317915 | NA | non-coding | upstream | 105027 | 64967751 ~ 64987569 (+) |
G1317929 | NA | non-coding | downstream | 1712 | 65150414 ~ 65153312 (+) |
G1317994 | NA | non-coding | downstream | 81900 | 65230602 ~ 65231434 (+) |
G1318560 | NA | non-coding | downstream | 107035 | 65255737 ~ 65255964 (+) |
G1318562 | NA | non-coding | downstream | 109411 | 65258113 ~ 65258405 (+) |
G1318569 | NA | non-coding | downstream | 120296 | 65268998 ~ 65270469 (+) |
G1317686 | LOC106576509 | other | upstream | 682562 | 64407009 ~ 64410034 (+) |
G1317674 | LOC106613263 | other | upstream | 702499 | 64389606 ~ 64390097 (+) |
G1317320 | NA | other | upstream | 1278227 | 63813840 ~ 63814369 (+) |
LOC110490586 | LOC106609575 | other | upstream | 1707414 | 63383366 ~ 63385748 (+) |
G1316007 | LOC100301653 | other | upstream | 2160074 | 62921704 ~ 62932522 (+) |
G1317968 | NA | other | downstream | 11274 | 65159976 ~ 65179127 (+) |
G1318650 | NA | other | downstream | 290716 | 65439418 ~ 65440249 (+) |
G1318642 | NA | other | downstream | 327274 | 65475976 ~ 65486232 (+) |
G1318681 | NA | other | downstream | 369000 | 65517702 ~ 65519728 (+) |
G1317960 | NA | non-coding | upstream | 14321 | 65130989 ~ 65132530 (+) |