LOC110513258 (cacna2d4)


Basic Information

Item Value
gene id LOC110513258
gene name cacna2d4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65153383 ~ 65231663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945553.1
ATGGGGTTCtattccctcctgtcctctgatCCAGTGATCCAGCCTGGGAAATACAAAGACATTGAGCCCACGGTGAAGATGGAGGAGGTGGACGGAGAGGAACTGGTGAAGAAGTTTGCTGAGGAGATGGAGGGCATGCTGGGTAGGAAGATGAAGTCTGTCAAGAGACTGGCGGAGGCAGCGGAGGACGCTGATCTATACCATGAATTCAACGCTACTTTAGAGtTCGACTACTACAACTCTATGCTGATCAACTCGGTGGATAAAGATGGAAACTCTATCGAGCTGGGAGGAGAGTTTCCTCTGGAAGAGAATGAACACTTCAACAAGCTCCAGGTCAACACTCTGCAGAGCGACATACAGGTTCCCACCAACGTTTACAACAAAGACCCTGGTATTCTAAACGGGGTGTACATGTCGGAGGCCCTGAACGATGTGTTCGTGGATAACTTCCAGAAGGACCCTACTCTAACCTGGCAGTACTTTGGCAGTGCCACTGGCTTCTTCAGACTCTACCCAGGCATCGCATGGACCCCAGATGAAAATGGTGTCGTCACGTTTGACTGCAGGAACAGAAACTGGTACATCCAGGCTGCGACCTCTCCCAAGGACATCATCATCGTAGTGGACGTCAGCGGGAGTATGAAGGGTCTCAGGCTCACTATTGCCAAGCACACTATTAACACCATCCTGGACACACTAGGGGAGAACGACTTTGTCAACGTCATCGCCTACAGCGACTATGTCCAATACGTGGAACCCTGCTTCAAGGGAACCCTGGTCCAGGCTGACCTGGACAACCGAGAGcacttcaaGTTGCTGGTTGAGGAGCTCCAGGTGAAAGGAGAGGGGAAAGTCAAGAAGGCCATGAAGGAATCCTTCAAGATCCTCAATGAGgcTGCATCGTTGGGTCAGGGTAGTCTGTGTAACCAGGCCATCATGCTGATCACTGACGGAGCCATGGAGGATTATGAGGAAGTGTTTCAGGAGTTCAACTGGCCAGAACGCAGGGTGCGTGTTTTTACTTACCTTATTGGTCGTGAGGTGACCTTCGCTGACACTGTGAAGTGGATTGCCTGCAACAATAAAGGTTACTACACACACGTCTCCACGCTGGCCGATGTTCAGGAGAATGTCATGGAGTACCTTCACGTTCTGAGTCGACCAATGGTCATCAACCATGATCATGACATCATCTGGACAGAGGCTTACATGGACAGTGCGCTGTTCAACACACAGGCTCAGAGCCTGCTCCTCATGACCTCTGTGGCCATGCCTGTGTTCAGCAAGAAGAAGGAGACGCTGTCTCATGGTATTCTGCTGGGGGTGGTGGGGACTGATGTTCCTCTGAGAGAACTGATGAGGCTGGCTCCTAGATACAAGCTGGGTGTCCATGGTTACGCCTTCCTCAACACCAACAACGGTTATATCCTCGCCCACCCTGCCCTCCGACCCCTGTATAAGGAGGGAAAGAAGCTGAAGCCAAAACCCAACTACAACAGTGTTGATCTGGCTGAGGTGGAGTGGGAGGACACGGATGAGACGTTGAGGACTGCCATGGTAAAAGGAGAGACAGGTACTCTGTCCTTAGACGTCAGAGCCACTGTAGAGAAAGGGAGAAGAGTCATGTTCCTGAAGAATGACTACTTCTACACAACCATCAACGAGACGCCGTTCAGtCTTGGCATGGTGCTGACCAGAGGGCACGGTGAATACATCTTCATAGGGAACGTGTCTGTTAGGGAAGGTCTCAATGACCTGATGCAGCCAGATGTTTCCATCGCAAATGAGTGgacCTACTGTGAGACAGACATTGACCCTCACCACCGCAAGCTGACCCAGCTCCAGGCTGTGTTTCGATACCTCACAGGGAAGGAACCTGATCTGGAGTGTGATGAGGAACTGTTGAGACAGACTCTGTTTGATGCTGTGGTCACAGCCCCCATGGAGGCTTACTGGACAGCATTGATGCTCAACCCATCTGGCATGGACGAGGGGGTGGAGACTGCGTTCCTGGGCACCCGGTCTGGTCTGATGAGGGTCACCAGATACGTGGGCATTGAGAAACGTGTTGCCAAGAAATTCCTGTCTCCGTCGGACAAGGAGAACATCTTTACGATGGACCACTTCCCCGTGTGGTATCGCCGCGCTGCAGAGTACCCCGCCGGCAAGTTCCTGTACTACATCCCCAAGGAGGACACCAGAGATACGTCAGGGAGGATGGTGATCGCCACCACAGCTGTGACTGTCACCGTGGGCAAGAAGACTGCAGTGGCAGGAGGTAGGAACAATTATCTcttttacatctctctctctcttGACTTTATGAATGCTTATGAGGACTTTATTAATGCTTATGAGGACTTTATGAATGCTTATGAGGACTTTATGAATGTTTATGAGGACTGTGTGAACGTTTATGAGGACTTTGTGAATGTTTATGAGGACTTTATGAATGTTTATGAGGACTTTATGAATGATATTGAGGACTTTATGAATGTTTATGAGGACTTTATGAATGATATTGAGGACTTTATGAATGTTTATGAGGACTTTATGAATGTTTATGAGGACTGTATGAACGTTTATGAGGACTTTATGAATGTTTATGAGGACTTTATGAATGCTTATGAGGACTTTGTGAATGCTTATGAGGACTTTATGAATGATATTGAGGACTTTATGACTGTTTATGAGGACTTTATGAATGTTTATGAGGACTGTGTGAACGTTTATGAGGACTTTGTGAATGTTTATGAGGACTTTATGAATGTTTATGAGGACTTTATGAATGATATTGAGGACTTCATGAATGTTTATGAGGACTTTATGAATGATATTGAGGACTTTATGAATGTTTATGAGGACTTTATGAATGTTTATGAGGACTGTATGAACGTTTATGAGGACTTTATGAATGTTTATGAGGACTTTATGAATGCTTATGAGGACTTTATGAATGATATTGAGGACTTTATGAATTGTCTATAA

Function

symbol description
cacna2d4 Enables voltage-gated calcium channel activity. Involved in calcium ion transmembrane transport and detection of light stimulus involved in visual perception. Part of voltage-gated calcium channel complex.

NR:

description
PREDICTED: voltage-dependent calcium channel subunit alpha-2/delta-4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945553.1 True 2991 mRNA 0.47 24 65153383 65231663

Neighbor

gene id symbol gene type direction distance location
LOC118938827 LOC106576471 coding downstream 94740 65021405 ~ 65058643 (-)
LOC118938826 NA coding downstream 138972 64995972 ~ 65014411 (-)
LOC110510812 NA coding downstream 152404 64997957 ~ 65000979 (-)
LOC110511498 NA coding downstream 168134 64960178 ~ 64998613 (-)
LOC110517607 NA coding downstream 187573 64962542 ~ 64965810 (-)
LOC110517393 LOC106576623 coding upstream 37327 65268990 ~ 65303134 (-)
LOC110512490 LOC106592130 coding upstream 646347 65878010 ~ 65892365 (-)
LOC110511373 LOC106592131 coding upstream 660785 65892448 ~ 65898819 (-)
LOC110511371 LOC106597280 coding upstream 670079 65901742 ~ 65979435 (-)
LOC110499707 LOC106609801 coding upstream 749978 65981641 ~ 65986435 (-)
G1318477 NA non-coding downstream 96 65068277 ~ 65153287 (-)
G1318479 NA non-coding downstream 3297 65148421 ~ 65150086 (-)
G1318523 NA non-coding downstream 10652 65141433 ~ 65142731 (-)
G1318515 NA non-coding downstream 19281 65133652 ~ 65134102 (-)
G1318498 NA non-coding downstream 50234 65099531 ~ 65103149 (-)
G1318561 NA non-coding upstream 23824 65255487 ~ 65255864 (-)
G1318867 NA non-coding upstream 45693 65277356 ~ 65277930 (-)
G1318925 NA non-coding upstream 202275 65433938 ~ 65434153 (-)
G1318926 NA non-coding upstream 208425 65440088 ~ 65440350 (-)
G1318934 NA non-coding upstream 236721 65468384 ~ 65468714 (-)
LOC110499867 LOC106576572 other downstream 668065 64481916 ~ 64636502 (-)
G1318164 LOC106576481 other downstream 925708 64216504 ~ 64227675 (-)
G1318092 NA other downstream 1069495 64083037 ~ 64083888 (-)
G1316904 LOC106609576 other downstream 1865479 63256527 ~ 63287904 (-)
G1318935 NA other upstream 238304 65469967 ~ 65473164 (-)
G1319357 LOC106593594 other upstream 1047382 66279045 ~ 66282108 (-)
LOC110490781 LOC106576552 other upstream 1576784 66808409 ~ 66920061 (-)
G1319781 LOC106576551 other upstream 1624516 66856179 ~ 66862281 (-)
G1319847 NA other upstream 1729288 66960951 ~ 66961304 (-)

Expression


Co-expression Network