Item | Value |
---|---|
gene id | LOC110518243 |
gene name | NA |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048579.1 |
NCBI id | CM023233.2 |
chromosome length | 81569517 |
location | 65868313 ~ 65875835 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XR_005036192.1 | False | 7387 | mRNA | 0.40 | 2 | 65868313 | 65875835 |
TU1504565 | False | 2124 | lncRNA | 0.41 | 3 | 65868970 | 65873177 |
TU1504562 | False | 1802 | lncRNA | 0.40 | 2 | 65869432 | 65873177 |
TU1504566 | False | 2524 | lncRNA | 0.38 | 4 | 65869432 | 65873177 |
TU1504564 | False | 2528 | lncRNA | 0.43 | 4 | 65872529 | 65875412 |
TU1504568 | False | 2529 | lncRNA | 0.43 | 3 | 65872529 | 65875412 |
TU1504572 | False | 2574 | lncRNA | 0.43 | 3 | 65872529 | 65875412 |
TU1504573 | True | 2822 | lncRNA | 0.43 | 2 | 65872529 | 65875412 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110518394 | LOC107732972 | coding | upstream | 2271 | 65291802 ~ 65866042 (+) |
LOC110514055 | LOC106575063 | coding | upstream | 719611 | 65092596 ~ 65150082 (+) |
LOC110517608 | LOC101268929 | coding | upstream | 938722 | 64839151 ~ 64929593 (+) |
LOC110510792 | wnt5b | coding | upstream | 1044284 | 64702781 ~ 64824029 (+) |
LOC110499870 | NA | coding | upstream | 1315598 | 64544135 ~ 64552715 (+) |
LOC118938897 | NA | coding | downstream | 118406 | 65994241 ~ 65995572 (+) |
LOC110499703 | tcpb | coding | downstream | 134036 | 66009871 ~ 66018682 (+) |
LOC118938981 | NA | coding | downstream | 139447 | 66015282 ~ 66015423 (+) |
LOC118938828 | LOC106596118 | coding | downstream | 145499 | 66021334 ~ 66032662 (+) |
LOC118938829 | rab3ip | coding | downstream | 174404 | 66050239 ~ 66145267 (+) |
G1318584 | NA | non-coding | upstream | 722 | 65867310 ~ 65867591 (+) |
G1318574 | NA | non-coding | upstream | 1113 | 65866207 ~ 65867200 (+) |
G1318798 | NA | non-coding | upstream | 9842 | 65855209 ~ 65858471 (+) |
G1318772 | NA | non-coding | upstream | 108137 | 65759445 ~ 65760176 (+) |
G1318801 | LOC106592130 | non-coding | downstream | 6348 | 65882183 ~ 65885822 (+) |
G1318807 | NA | non-coding | downstream | 16201 | 65892036 ~ 65892776 (+) |
G1318809 | NA | non-coding | downstream | 19477 | 65895312 ~ 65896117 (+) |
G1318810 | NA | non-coding | downstream | 22162 | 65897997 ~ 65898809 (+) |
G1318812 | NA | non-coding | downstream | 45365 | 65921200 ~ 65924262 (+) |
G1318760 | NA | other | upstream | 138502 | 65728972 ~ 65733390 (+) |
G1318738 | NA | other | upstream | 195200 | 65672060 ~ 65673113 (+) |
G1318681 | NA | other | upstream | 348585 | 65517702 ~ 65519728 (+) |
G1318642 | NA | other | upstream | 382081 | 65475976 ~ 65486232 (+) |
G1318650 | NA | other | upstream | 428064 | 65439418 ~ 65440249 (+) |
LOC110516332 | LOC106576535 | other | downstream | 324439 | 66151307 ~ 66204153 (+) |
LOC118938930 | NA | other | downstream | 332304 | 66208118 ~ 66216416 (+) |
G1319408 | NA | other | downstream | 539662 | 66413361 ~ 66418822 (+) |
LOC110490596 | LOC106576549 | other | downstream | 1067091 | 66930414 ~ 66961526 (+) |
LOC110499851 | LOC106576554 | other | downstream | 1173778 | 66981465 ~ 67065448 (+) |