LOC110499707 (LOC106609801)


Basic Information

Item Value
gene id LOC110499707
gene name LOC106609801
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 65981641 ~ 65986435 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036944980.1
ACATTAGACAAGAGGAACGTAATCGTTTTAGCTCCCGTGTTCACATCGGACCAAGAACAATGTAACGTACTTCCGGTGCTTGTTTGGCTGGCAATTTGAAATTTGTACAATGTAAAATCGTGTTGTTTCCGTAGATTTAATGGCAATCTTATTAAATGACACGTTCCAAATCACTACTGCAAGAGTCCTATAGTGACATATACGAGTTTAACGTCACTTTCTAGTCTCTATACTATGTTTAAAAGGATGGCTGAATTTGGACCAGATTCCGGGGGTAGAGTGAAGGGTGTTACGATCGTCAAACCCATCGTATTCGGAAACGTTGCTCGGTATTTTGGAAAGAAGCGAGAGGAGGACGGACACACTCACCAATGGTCTGTGTACGTGAAACCATACAGAAACGAGGATATGTCTGCATATGTGAAGAAAATACAGTTCAAGCTACATGAAAGTTACGTGAATCCACTCAGAGTCGTGACGAAGCCTCCGTACGAGATCACAGAGACGGGCTGGGGAGAGTTTGAGATCATCATCAAGATATTTTTCATCGACCCCAATGAGAGGCCGGTGACTCTCTACCACCTACTGAAGCTCTTCCAGTCTGACTCCAGTGCCATGCCCAAGAAGACGGTGGTCTCTGAATTCTATGATGAAATGATCTTCCAGGACCCCACAGCCATGATGCAACAGCTCCTTAGCACCTCTAGACAACTGACCCTGGGGGCCTATAAGCACGAGACTGAGTTTGCGGAGCTGGAGCTGCGGACGCGGGAGAAGCTGGAAGCAGCGAAGAAGAAGACCAGTCAGGAGATCACAGACCTGAAGGATAGACTGAAGGCCAGCAGAGAGACCATCAACTTCCTGAAGGGAGAGATACGCAagctggaggaggaggaccagatCAAAgaccactgatacacacacactgggtgaATCTCAATGGTATTTTCTTGATTCCTCATACCTTCTCTCCTTGCATCCTTCTCAAAACTCATTGGAACACAAGATATGAGGTTCCTTGTCTTGGATCTTCTCTTCCTatgtgttttgagaaggagatgagagaggacgcAATGAATCATGGATATACAATTGAGACACACCCTAAATTCCAAATCAACCTATAGGCCATCTCCCCGAGGCACCCCTGTATATCTGAAGGGTTTGGATAGGTGGATGCAATATGGTGCTTGTGACTCACCTTGTCTTCCCGATTTCTGATAGGCTGGATGGAGTTTACGCCTTTTTTCTTCCACCTATCCAACCCCTTCAGAGCAAAGGGAGGTGCCAGGGAGGAGGGGCTAGGGATGGATTTGGAAATTGCCCTCGTCTGGAATCCACACAGAATATCACTCCATTTTACGATTGTTTAATTCCTTAATATAATATCTGTCATTTCTCAGATGCTTTcatccaaagtgacttagtcatgtgtgtgtatgactccaaagtgacttagtcatgtgtgtgtatgactcCAGAGGGACTTGGTCATGCGTGTGTATATTCGTCGTACGGGTGGGTCCCTGGAATGGACTCCACTATCTGGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGCCACAGGACCTCACATCATTATGGATGATTGCACTAACAATAGAGACATGTAGAGGCATTCCGTTTGAATTCCAGACTTAACACTGCCTAGCAGAATGGTTTTATATGATCATGTACATAATAAACAAGAACACTGAAGATAATCCATGTTCGTTTCACCCCACTCTCAATTCCACTCAGATTTACCACAGATGGCTCTCAGTGCCAACATGTCACATCTGTGTAGACTGGTCTGAATGTGAATAGGTTTTGAgcttctgtttttaatttttaattttctTTTTTTCTGTAAAACTCAAACCAGTTTTTCTTTGATTTCTCCTATGTGATGGAACAGATGGATCAAACATGTCTTAGATGCTATTCAGggttatttgcaaattattattTTGTCAAGGATTGATCTCTTAAAACACACGTGGATAGCCTGGGCATGGCCAACTGTCTCGGTATCAGTACATGTGTCGACCCTTTTGATATGACTTCACTTCTTGATCATCATTTAGATAAAAGATCGAGAACGACAGCAGGCATTTTCATCTCTGTTGGAGAGCGCTAAACTGTTGTTTACCTTGTAAGGAGACCGGAGCGCTGTAACGTTTGATGAATATACAGCCTCTGCATTACCCTTTCACCACCACTAGAGAGCGGCGATGAGCAAATATTTATTGGAAGTGGGAGGTGGCAACAATTGTTTTATATTccaagagaaagggaggaggcaaCAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGAGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTAGAAACAAGGTGTGAGTGAAGAAGGACAGGGGCTTGTGGCATCAACAACAGGTGCATAGCAGCATTAATGGCGTATTGTATTATTACAGATTGACCAGCATTC
>XM_036944981.1
GCAGAACATTAGACAAGAGGAACGTAATCGTTTTAGCTCCCGTGTTCACATCGGACCAAGAACAATGTAACGTACTTCCGGTGCTTGTTTGGCTGGCAATTTGAAATTTGTACAATGTAAAATCGTGTTGTTTCCGTAGATTTAATGGCAATCTTATTAAATGACACGTTCCAAATCACTACTGCAAGAGTCCTATAGTGACATATACGAGTTTAACGTCACTTTCTAGTCTCTATACTATGTTTAAAAGGATGGCTGAATTTGGACCAGATTCCGGGGGTAGAGTGAAGGGTGTTACGATCGTCAAACCCATCGTATTCGGAAACGTTGCTCGGTATTTTGGAAAGAAGCGAGAGGAGGACGGACACACTCACCAATGGTCTGTGTACGTGAAACCATACAGAAACGAGGATATGTCTGCATATGTGAAGAAAATACAGTTCAAGCTACATGAAAGTTACGTGAATCCACTCAGAGTCGTGACGAAGCCTCCGTACGAGATCACAGAGACGGGCTGGGGAGAGTTTGAGATCATCATCAAGATATTTTTCATCGACCCCAATGAGAGGCCGGTGACTCTCTACCACCTACTGAAGCTCTTCCAGTCTGACTCCAGTGCCATGCCCAAGAAGACGGTGGTCTCTGAATTCTATGATGAAATGATCTTCCAGGACCCCACAGCCATGATGCAACAGCTCCTTAGCACCTCTAGACAACTGACCCTGGGGGCCTATAAGCACGAGACTGAGTTTGCGGAGCTGGAGCTGCGGACGCGGGAGAAGCTGGAAGCAGCGAAGAAGAAGACCAGTCAGGAGATCACAGACCTGAAGGATAGACTGAAGGCCAGCAGAGAGACCATCAACTTCCTGAAGGGAGAGATACGCAagctggaggaggaggaccagatCAAAgaccactgatacacacacactggGCTGGATGGAGTTTACGCCTTTTTTCTTCCACCTATCCAACCCCTTCAGAGCAAAGGGAGGTGCCAGGGAGGAGGGGCTAGGGATGGATTTGGAAATTGCCCTCGTCTGGAATCCACACAGAATATCACTCCATTTTACGATTGTTTAATTCCTTAATATAATATCTGTCATTTCTCAGATGCTTTcatccaaagtgacttagtcatgtgtgtgtatgactccaaagtgacttagtcatgtgtgtgtatgactcCAGAGGGACTTGGTCATGCGTGTGTATATTCGTCGTACGGGTGGGTCCCTGGAATGGACTCCACTATCTGGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGGCCGTACTGTCACCATGCTCATCCTGCCACAGGACCTCACATCATTATGGATGATTGCACTAACAATAGAGACATGTAGAGGCATTCCGTTTGAATTCCAGACTTAACACTGCCTAGCAGAATGGTTTTATATGATCATGTACATAATAAACAAGAACACTGAAGATAATCCATGTTCGTTTCACCCCACTCTCAATTCCACTCAGATTTACCACAGATGGCTCTCAGTGCCAACATGTCACATCTGTGTAGACTGGTCTGAATGTGAATAGGTTTTGAgcttctgtttttaatttttaattttctTTTTTTCTGTAAAACTCAAACCAGTTTTTCTTTGATTTCTCCTATGTGATGGAACAGATGGATCAAACATGTCTTAGATGCTATTCAGggttatttgcaaattattattTTGTCAAGGATTGATCTCTTAAAACACACGTGGATAGCCTGGGCATGGCCAACTGTCTCGGTATCAGTACATGTGTCGACCCTTTTGATATGACTTCACTTCTTGATCATCATTTAGATAAAAGATCGAGAACGACAGCAGGCATTTTCATCTCTGTTGGAGAGCGCTAAACTGTTGTTTACCTTGTAAGGAGACCGGAGCGCTGTAACGTTTGATGAATATACAGCCTCTGCATTACCCTTTCACCACCACTAGAGAGCGGCGATGAGCAAATATTTATTGGAAGTGGGAGGTGGCAACAATTGTTTTATATTccaagagaaagggaggaggcaaCAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGAGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTGTTTGTATTGGAAGAGGGAGGTGGCAACAATTAGAAACAAGGTGTGAGTGAAGAAGGACAGGGGCTTGTGGCATCAACAACAGGTGCATAGCAGCATTAATGGCGTATTGTATTATTACAGATTGACCAGCATTC

Function

NR:

description
PREDICTED: YEATS domain-containing protein 4 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K11341 YEATS4, GAS41, YAF9; YEATS domain-containing protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036944980.1 False 3080 mRNA 0.46 7 65981641 65986430
XM_036944981.1 True 2790 mRNA 0.46 8 65981641 65986435

Neighbor

gene id symbol gene type direction distance location
LOC110511371 LOC106597280 coding downstream 2206 65901742 ~ 65979435 (-)
LOC110511373 LOC106592131 coding downstream 82822 65892448 ~ 65898819 (-)
LOC110512490 LOC106592130 coding downstream 89276 65878010 ~ 65892365 (-)
LOC110517393 LOC106576623 coding downstream 678507 65268990 ~ 65303134 (-)
LOC110513258 cacna2d4 coding downstream 749978 65153383 ~ 65231663 (-)
LOC110500955 cpsf6 coding upstream 1497 65987246 ~ 66009466 (-)
LOC110499708 LOC106576651 coding upstream 46626 66033061 ~ 66047899 (-)
LOC110519161 NA coding upstream 426900 66413335 ~ 66416251 (-)
LOC118938831 LOC106609809 coding upstream 431019 66417454 ~ 66513524 (-)
LOC110515929 ptprr coding upstream 533283 66518773 ~ 66553585 (-)
G1319128 NA non-coding downstream 21610 65959651 ~ 65960031 (-)
G1319126 NA non-coding downstream 28386 65952931 ~ 65953255 (-)
G1319120 NA non-coding downstream 49341 65932088 ~ 65932300 (-)
G1319119 NA non-coding downstream 50712 65930679 ~ 65930929 (-)
G1319116 NA non-coding downstream 57393 65922192 ~ 65924248 (-)
G1319142 NA non-coding upstream 32634 66019069 ~ 66019359 (-)
G1319188 NA non-coding upstream 72038 66058473 ~ 66059044 (-)
G1319189 NA non-coding upstream 72855 66059290 ~ 66060760 (-)
G1319213 NA non-coding upstream 128741 66115176 ~ 66115643 (-)
G1318935 NA other downstream 508477 65469967 ~ 65473164 (-)
G1318477 NA other downstream 830241 65068277 ~ 65153287 (-)
LOC110499867 LOC106576572 other downstream 1496323 64481916 ~ 64636502 (-)
G1318164 LOC106576481 other downstream 1753966 64216504 ~ 64227675 (-)
G1318092 NA other downstream 1897753 64083037 ~ 64083888 (-)
G1319357 LOC106593594 other upstream 292610 66279045 ~ 66282108 (-)
LOC110490781 LOC106576552 other upstream 822012 66808409 ~ 66920061 (-)
G1319781 LOC106576551 other upstream 869744 66856179 ~ 66862281 (-)
G1319847 NA other upstream 974516 66960951 ~ 66961304 (-)
LOC110511902 LOC106609654 other upstream 1094346 67079306 ~ 67084695 (-)

Expression


Co-expression Network