LOC110515929 (ptprr)


Basic Information

Item Value
gene id LOC110515929
gene name ptprr
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66518773 ~ 66553585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945009.1
agagacagacagagagagagagagacagagagctgatcagggtgtatcagtgtgtatcacCGTGGGCTTGGGGCTGAATACGAGACGTGGATTTTAAAGGTGGTGTGGCTGGATTGGTTAACTTTTACAGGCTGACTGGACGGTTGTTCTGCAGaaGAATGTGCTACAGGATCAACATGAGAGGGACAATATTTGGACTAAAGAGGGATTCTTTGCTGCGGTCatcttcctcaccatcttcatcatcatcatcacctgtTTGATGgtccTCTACCGTCTAAAGGAGAAGGTTGAATATTCTGACAGGCAGACCAAAGAGCAGTCCGTGTTCCCCAGCCGCGACCTTCACCTGACCCCTGTCACCGTCCCACCCCCGGTCCCGCTGCACGCCGTCGGAGCACAGACCCAGCCCCAGGTCCCCTTCTCTAGCAGCATGGTCCAAGCAGAGCCAGCACCGCCTTCTACACCCATATCCATACCTCCACCCAGAGCCTGCCGTCCTCCACCCaccacccctgtccccatccctgtCTCCAGCTCCAGCTGTGGTCCTCCGCAGCTCCCCCCTGCCCACCAGAAACCCTGCCTGTCAGCCAGCCCCTCTCCCTTCAGGATGAAGCCTGCCGCGTGTCTCCAGGAGAGGAGAGGCTCCAACGTCTCCCTGGTGCTGGACATGTCCTCCCTGGCCTCGGTGGAGCCCCTGAACTGTGGGGTGGTGACCCCCAGAGAGAGGGCCACTCAGGACTACCTGCAGTCAGCCAGCCGGACCCTGTCCAGACAGCAGCTACGAGACGTGGTGCTCAACACACAGACGCTGCACGCAGAGTTCGCTGAAATCCCAATGAACTTTGTGGATCCAAAGGTGATAGACATTTCCAGTCATGGAACCAAAAACAGATACAAGACAATACTGCCAAATCCACATTCCAGAGTGATCCTGAGGACCAAGAGCTCCTTCGACCCTCTCAGCAGCTACATCAACGCCAACTACATTAGGGGTTACCTAGGCGATGAGAAGGCCTACATCGCCACCCAGGGTCCCATGATCAACACAGTGAATGATTTCTGGCAGATGGCCTGGCAGGAAGACTGTCCTGTCATCATCATGATCACCAAGCTCAGGGAAAAGAACGAGAAATGTGTTCTGTACTGGCCAGAGAGGCGTGGTATCTATGGCAAGGTGGAGGTGCTCATTAACAACGTGACAGAGTGTGACAACTACACCTGTCGGACCCTCAACCTGAAGCAAGGGGCCCAGAGTCGTGTGGTGAAGCACTACTGGTACACATCGTGGCCGGACCATAAGACCCCAGACAGCGCCCAGCCCCTGCTCCAGCTGATGAGAGACGTGGAGGAGGACAGGACGGGCTCCCTATCGCAGGGACCCGTCATCGTACACTGCAGCGCAGGGATTGGCCGAACGGGCTGCTTCATCGCCACGACGATAGGCTGTCGTCAGTTGGAGCTGGAGGGAGTGGTGGATGTGCTGGGGATTGTGTGTCAGCTCAGAGCGGACAGAGGAGGTCTGATCCAGACAGGGGAGCAGTACGAGTTTGTCCACCACGCCTTGAGCCTCTTCGAGACACGCCTCTCCGCCGACACCGGCCAATGAACAGAGGCCAGGAAGTTTTCGTTAAAACATGCCAGGTTTTTCCAGGAAGTGGAATTTAATTTCTCCCTGGCGGGAAGGACCTATCTTACCCGGTGACTGTGAGGTCATGTGACTAATGAGGAAGTGGATGTTTGCGTGACGATTGGATGGTAGATGTCCTTGTGGGCTTTGTCTTTGTGGACATGTATGGACAGCCTGGACTGCTATTGGCTGATTGATTGAGTCtccttacagagagagagatggaggtatggACCGGTGATTTTGTCTCTGAATGTAATGTatcctttcttctcttcctctctttcctcctcttcttctactacttcctGTCATTCGTGAGCAGCTCTGCTTCTGAAAACGTTGTTGTGAGCAACCTGCCTCTGTCCAATCAAACTCTCTGATACTGCAGCTCTGTCCAATCAGATTGCCTGATATTGATTCCGTAGTATACCTACACTCTGACCTCTTACTACTATGCGCTATAGTGGATGGGTAGGTAGTCTGTGGTCCTTGAATCGTCCATGGTGTTTCTATTAAAAAGGAAAAAGTACGTTGTTGAAATGAATAGCACTTGTCTTTGTGACTTTACTAGGATATTtttgaattctgattattttatttatttttaactatGTGTTGTTACACAAAGGTTATTATTCTGAAGACTGTTATATTCCATTGGAGGTTGGCTTTTCTCTCAGTAACACACTAGAAGCTGCCCCTCTGCCATATACTATACCTCTAATAGCATGTTGATCATCCATTGAAAGATCAGTGTATGAAAGGTGAGGGAACGATTGGGCCTGTCTGCACGGCCACTACACATCAAAAGGTATTTTCACCATGGGGATGGCCATTATACACACTGAATTGGAAGCAAATAACAAACATAAAAAGCCAGCCGACACGCAGGCCCTTCAGGAATTGAGTTTGGCAGCCCCCTGCTATAGGCCCCTCCTGTAGATCTACCGTATTCACAGAGAACTGTCATGGCCGCCGTGTGATCCAATGTTCCATACCAAAGCTCTCTGTTATCAGGTGCCGTGTGATCTACCCTGGCTCTGAAACGACGTTTCATCAGTAAATCAATATTTAATAACAAAACCTTTTTCTTTTCAGAAAATCAGTTATTTTCCCATTTCTTATCTTTCACATCCATCCTCAGGTATATTGTGTTGACCATTAAAGGCCccgtgcagtcaaaaacatgattttgtccccccccctgtgttttatatatatatacacacatactatGATGTTGGAATAAGGCAGTTAATTGAAATTGAGATAAAAAACGGCTGCGTTGGGCCTTTAAGCATCACAGATATATGACAACTTTCtttaccaaaatgtaaatgtttgcGTTTAAATGACATGTCATGTTTAATTGTTGATCATATAGATTAaattatagtaataataataatgatttttAGTTTTATACAATATTAAGATAATGTTTTGATGTGTAACAGTAAACTCATGATCGTTTGGTACTTTTAGACATGTTTTCTCTGTATGACTGAATGGTGTAGATTCCCACACACTTTATCTCTAGAACCAACCAATTATTACAAGGATAACGTCAATCAGACActtataaaaaaaaattgtctggATTATCTGACCCTGATTTCAAactctgatatactgtagcttctAAATGCCGAATACATACAGTTGtagtaagaagtttacatacaccttagccaaatacatttaaactcagtttttcaccattcctgacatttaatcctagtaaatattccctgttttaggtcagttaggatcaccac
>TU1505851
AGAAATGTGTTCTGTACTGGCCAGAGAGGCGTGGTATCTATGGCAAGGTGGAGGTGCTCATTAACAACGTGACAGAGTGTGACAACTACACCTGTCGGACCCTCAACCTGAAGCAAGGGGCCCAGAGTCGTGTGGTGAAGCACTACTGGTACACATCGTGGCCGGACCATAAGACCCCAGACAGCGCCCAGCCCCTGCTCCAGCTGATGAGAGACGTGGAGGAGGACAGGACGGGCTCCCTATCGCAGGGACCCGTCATCGTACACTGCAGCGCAGGGATTGGCCGAACGGGCTGCTTCATCGCCACGACGATAGGCTGTCGTCAGTTGGAGCTGGAGGGAGTGGTGGATGTGCTGGGGATTGTGTGTCAGCTCAGAGCGGACAGAGGAGGTCTGATCCAGACAGGGGAGCAGTACGAGTTTGTCCACCACGCCTTGAGCCTCTTCGAGACACGCCTCTCCGCCGACACCGGCCAATGAACAGAGGCCAGGAAGTTTTCGTTAAAACATGCCAGGTTTTTCCAGGAAGTGGAATTTAATTTCTCCCTGGCGGGAAGGACCTATCTTACCCGGTGACTGTGAGGTCATGTGACTAATGAGGAAGTGGATGTTTGCGTGACGATTGGATGGTAGATGTCCTTGTGGGCTTTGTCTTTGTGGACATGTATGGACAGCCTGGACTGCTATTGGCTGATTGATTGAGTCtccttacagagagagagatggaggtatggACCGGTGATTTTGTCTCTGAATGTAATGTatcctttcttctcttcctctctttcctcctcttcttctactacttcctGTCATTCGTGAGCAGCTCTGCTTCTGAAAACGTTGTTGTGAGCAACCTGCCTCTGTCCAATCAAACTCTCTGATACTGCAGCTCTGTCCAATCAGATTGCCTGATATTGATTCCGTAGTATACCTACACTCTGACCTCTTACTACTATGCGCTATAGTGGATGGGTAGGTAGTCTGTGGTCCTTGAATCGTCCATGGTGTTTCTATTAAAAAGGAAAAAGTACGTTGTTGAAATGAATAGCACTTGTCTTTGTGACTTTACTAGGATATTtttgaattctgattattttatttatttttaactatGTGTTGTTACACAAAGGTTATTATTCTGAAGACTGTTATATTCCATTGGAGGTTGGCTTTTCTCTCAGTAACACACTAGAAGCTGCCCCTCTGCCATATACTATACCTCTAATAGCATGTTGATCATCCATTGAAAGATCAGTGTATGAAAGGTGAGGGAACGATTGGGCCTGTCTGCACGGCCACTACACATCAAAAGGTATTTTCACCATGGGGATGGCCATTATACACACTGAATTGGAAGCAAATAACAAACATAAAAAGCCAGCCGACACGCAGGCCCTTCAGGAATTGAGTTTGGCAGCCCCCTGCTATAGGCCCCTCCTGTAGATCTACCGTATTCACAGAGAACTGTCATGGCCGCCGTGTGATCCAATGTTCCATACCAAAGCTCTCTGTTATCAGGTGCCGTGTGATCTACCCTGGCTCTGAAACGACGTTTCATCAGTAAATCAATATTTAATAACAAAACCTTTTTCTTTTCAGAAAATCAGTTATTTTCCCATTTCTTATCTTTCACATCCATCCTCAGGTATATTGTGTTGACCATTAAAGGCCccgtgcagtcaaaaacatgattttgtccccccccctgtgttttatatatatatacacacatactatGATGTTGGAATAAGGCAGTTAATTGAAATTGAGATAAAAAACGGCTGCGTTGGGCCTTTAAGCATCACAGATATATGACAACTTTCtttaccaaaatgtaaatgtttgcGTTTAAATGACATGTCATGTTTAATTGTTGATCATATAGATTAaattatagtaataataataatgatttttAGTTTTATACAATATTAAGATAATGTTTTGATGTGTAACAGTAAACTCATGATCGTTTGGTACTTTTAGACATGTTTTCTCTGTATGACTGAATGGTGTAGATTCCCACACACTTTATCTCTAGAACCAACCAATTATTACAAGGATAACGTCAATCAGACActtataaaaaaaaattgtctggATTATCTGACCCTGATTTCAAactctgatatactgtagcttctAAATGCCGAATACATACAGTTGtagtaagaagtttacatacaccttagccaaatacatttaaactcagtttttcaccattcctgacatttaatcctagtaaatattccctgttttaggtcagttaggatcaccactttattttaagaatgtgaaatgtcagaataatagtagagagaattatttatttcagcttttatttctttcatcacattcccagtgggtcagaagtttacagacactcaattagtatttggtagcattgccttaaaattgtttaccttgggtcaaaagttttgggtagccttccacaagctgcccacaataagttgggtgaattttggcccattcctccttacagagctggtataactgagtcaggttacacctaggtaggcctccttgctcgcacatgctttttcagaatctgcccacaaattgtctatagggttgaggtcagggctttgtgatggccactccaataccttgactttgttgtccttaagccattttgccacaactttggaagtatgcttggggtcattgtccatttggaagacccatttgcaaccaagctttaacttcctggactgatgtcttgagatgttgcttcaatatatccacataatattcctacttcatgatgccatctattttgtaaagtgcaccagtccctcctgcagcaaagcacccccacaacatgatgctgccacccccgtgcttcacggttgggatggtgttcttcggtttgcaagcctccccctttttcctccaaacataacgatggtcgttatggccaaacagttctatttttgtttcatcacaccagaggacatttctccaaaaagtacaatctttgtcccaatgtgcagttgcaaactgtaatctggctttttttatggcgattttggagcagtgacttcttccttgctgagcagcctttcatgttatgttgatataggactcgttttactgtggatatagatacttttgtatctgcttcttcacaaggtcctttgctgttgttctgggattgattttcacttttcgcaccaaagtatattcatctctaggagacagaa

Function

symbol description
ptprr Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Orthologous to human PTPRR (protein tyrosine phosphatase receptor type R).

NR:

description
receptor-type tyrosine-protein phosphatase R-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945009.1 False 3414 mRNA 0.47 11 66519718 66553585
TU1505851 True 3226 lncRNA 0.43 3 66518773 66526280

Neighbor

gene id symbol gene type direction distance location
LOC118938831 LOC106609809 coding downstream 6194 66417454 ~ 66513524 (-)
LOC110519161 NA coding downstream 103566 66413335 ~ 66416251 (-)
LOC110499708 LOC106576651 coding downstream 471819 66033061 ~ 66047899 (-)
LOC110500955 cpsf6 coding downstream 510252 65987246 ~ 66009466 (-)
LOC110499707 LOC106609801 coding downstream 533283 65981641 ~ 65986435 (-)
LOC110519130 LOC106609628 coding upstream 11333 66564918 ~ 66638625 (-)
LOC110501008 LOC105020375 coding upstream 101613 66655198 ~ 66713032 (-)
LOC110490781 LOC106576552 coding upstream 254824 66808409 ~ 66920061 (-)
LOC110490597 LOC106609625 coding upstream 370457 66924042 ~ 66940668 (-)
LOC110490598 LOC106576550 coding upstream 387155 66940740 ~ 66942750 (-)
G1319563 NA non-coding downstream 1054 66517732 ~ 66518664 (-)
G1319560 NA non-coding downstream 3499 66514279 ~ 66516219 (-)
G1319595 NA non-coding downstream 11367 66507810 ~ 66508351 (-)
G1319589 NA non-coding downstream 41349 66477813 ~ 66478369 (-)
G1319566 NA non-coding downstream 90853 66427794 ~ 66428865 (-)
G1319620 NA non-coding upstream 63511 66617096 ~ 66617707 (-)
G1319793 NA non-coding upstream 235260 66788845 ~ 66792001 (-)
G1319357 LOC106593594 other downstream 237610 66279045 ~ 66282108 (-)
G1318935 NA other downstream 1046554 65469967 ~ 65473164 (-)
G1318477 NA other downstream 1368318 65068277 ~ 65153287 (-)
LOC110499867 LOC106576572 other downstream 2034400 64481916 ~ 64636502 (-)
G1318164 LOC106576481 other downstream 2292043 64216504 ~ 64227675 (-)
G1319781 LOC106576551 other upstream 302594 66856179 ~ 66862281 (-)
G1319847 NA other upstream 407366 66960951 ~ 66961304 (-)
LOC110511902 LOC106609654 other upstream 527196 67079306 ~ 67084695 (-)
G1320139 NA other upstream 639531 67193116 ~ 67193493 (-)
G1319602 NA non-coding upstream 18648 66544928 ~ 66547948 (-)
G1319559 NA non-coding upstream 25557 66551837 ~ 66562591 (-)

Expression


Co-expression Network