LOC110501008 (LOC105020375)


Basic Information

Item Value
gene id LOC110501008
gene name LOC105020375
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 66655198 ~ 66713032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945010.1
GaaaaacagaagagagagaatagaggaagaCGGAACCATGTGCACAGGATTCTCTTCTATTTCACAGTACTTCAACGTTGCTCAGttcactccctcccccctctctctcatacacactccccctctctctcgctcagctgctctccctcccctcctgtggatggtgtagctctctctctctccctctctgtctggcgGAGCCGTGGACAGGATTGGAGGCTAGTAGTGAGTGactgcggagagagagagagactgaagagaagagaggagagcagagcagaagaGAGATCTATATTAGCAGTATCTCTGCTGGATACCTCTTCAATATTTCAATCAGAATTCTTCCTCAACCAGCTCGAGCCTCACACTTCCCACCGGACCCCCATCACCCTACCCTTACCAGGGGGACATATGAACAGCACAGAGGGTTTACCACCCCGGACCTCCACACAGGGAGCCATGTGATACCCCCTTGCGCTGCTGAAATTCCCCCAAATCGGTGCTCTGAATCGGGATTGAAACCAAGGATTGTATCCACCCTGCTTGAAACCCCCTCCTGGGTTTGTGGATCTTCTCTAGCTgcaagaggaggaagggaagggagggactGCTAGGTCTCTGCATACCCGGCTGGGAGACACTCTTCTCTGGGCAAGTGTGGGGTGTGTGCCCCCCTTGGGCTGGAGGCCAGCGCTCCAGCACCATGGATTACCTACCTGGGATTgtactgttgctgctgttctGCGGGGCGGTGGTGCCGGGGCAGGGGGAGCCCAAGCACAGCGTCCCCAGGTTAAAGCTCTCCTACAGGGagatggTAGAATCCAGTAACCTCATCACTTTCACCGGCCTCACCAACAGCTCCGGCTACGACACCTTCCTATTggacgaggagagaggaagacTGTTGGTGGGTGCCGAGGACCACGTCTTCTCCTTCGACTTGGTCAATCTCAACAGAGAGCACAAACAGaTCGCATGGCCAGCCACACCCTCAAAGCGTGACGAGTGCAAGTGGGCGGGGAAAGACCTCGGGAAAGAGTGTTCCAACTTCATCCGAGTGCTCCAACCCTACAACTCCACCCACCTGTATATCTGTGGTACAGGGGCCTTCCATCCCATCTGTGCCTACCTGGAGATGGGCAAACGGGCAGAGGACAACATCTTTCGACTGGAGTCGTCCCACTTCGAGAACGGCCGGGGGAAAAGCCCCTACGACCCCAAGATGCTCTCTGCGTCCATCATGTTAGATGGGGAGCTGTACTCTGGCACATCGGCAGACTTCATGGGAAGGGACTTTGCCATCTTCCGCACCCTCGGGGAGCATCATCCTATCAGGACTGAGCAACATGACTCTAGATGGCTCAATGaccccAGGTTTGTAGGTGTAAACCTGATCCCAGAGAGTGACAACCCTGAGGATGATAAGATCTTCCTCTTCTTCAAAGAGAACGCTATGGACGGAGAACACACTGGCAAGGCCACTATTGCCCGCATAGGACAACTGTGTAagAATGACCTGGGAGGTCACAGGAGTCTGGTCAATAAGTGGACCACCTTCCTCAAGGCCAGACTGACCTGCTCAGTGCCAGGCCTCAACGGCATCGACACACACTTCGACGAGCTGCAGGATGTCTTTCTGATGAGCTCCAAAGATCCTAAGAACCCAGTGATCTATGCTGTCTTCACCACTTCTAGTAACATATTCAAAGGCTCAGCAGTGTGTATGTACAACATGGCAGACATCCGGAGGGTCTTCCTGGGTCCCTATGCCCACCGAGATGGGCCCACCTACCAGTGGGTACCCTTCCAGGGGAGGGTGCCCTACCCCCGCCCTGGCACGTGCCCCAGTAAAACGTTTGGGGGCTTTGACTCCACCAAGGACCTCCCTGATGATGTGATCACCTTTGCGCGGGGCCACCCGGCCATGTTTAACCCCGTGCACCCCATCGGGGGTCGTCCCATCGTGGTGAGGACTGATGTGGACTACCAGTTCTCCCAGCTAGTGGTGGACAAGGTGGAGGCCGAGGACGGACAGTACGACGTCATGTTCATTGGAACAGACCTTGGCACGGTCCTGAAGGTGGTTACCATCCCAAGAGAGAGCTGGCATGACCTGGAAGAGGTGGTCCTGGAGGAGATGACCGTGTTCAGGGAGCCCACCCCCATCACAGCAATGGAGCTTTCCACCAAACAGCAACAGCTGTACCTGGGCTCGACGCTAGGCGTTTCCCAGATGCCTTTGCACCGCTGTGAGGTGTACGGGAAGGCTTGCGCTGAGTGCTGTCTGGCCCGTGACCCCTACTGTGCCTGGGATGGAACAGAGTGCTCCCGTTACTTCCCTACCGCCAAgcgGAGAACGAGACGCCAGGACATCAGGAATGGAGATCCCCTCTCCCAGTGCTCCGACCTGCAGCATCATGATGACGTGGACGGGCTGGGTCATGTGGAGGACAGGAGTGTGTACGGAGTGGAGAACAGCAGCATGTTCCTGGAGTGTAGTCCCAAGTCCCAGAGAGCCCTCATCTACTGGCAGCTCCAAAGACCCAACGAGGACCGCAAACATGAGatcaAGTCCGAGGACAGGATGATCCGCACGGAGCAGGGCCTGCTCATCCGCATCCTCACCCAGGCCGACTCAGGCGTCTACACCTGCCACGCTGTGGAGCACGGCTTCATCCAGCCCCTCCTCCGCCTCTCCCTCCAGGTCATCCCCACACAGAGGCTGGGTGAGCTGCTGCCTGGTGGGCCTCAGGGTGGAGCTGGAGGGTCTGGTGGCGCAGGTAGTGGGTCTGGTGGTGCAGGTGGGCCTGCTGGTGCAGGGCACTCAACAAAACACAAGCTGTGGTACAGGgatttcctctccctcctcgaCCACCCTGACCTGAACAGCGTGGAGGAGTTCTGCGAGCGTGTGTGGCGGAAGGAGCGCAAGCAGCGGCGTCTGAAAacccccaccatcaccaccaatgACCAAAGTCTGGCTAGGCCTGACGGCGGAGCTCCAAGCTCAGGCCTAAAGCCTAAAAGTAGTCCTCTTGGCGCAGGTGCACCCAATGCCCAGAAGCAGCAGAGCGGGCATCCTACggtgcagcagcagcagaacaAAGAAGGGAGCCCCCGGAGCACGAACCCCCAGAAGGTGCAACACCATGCGGGTACGCTAACCCAGGCACAGGCCCCTAAAAACAACAACCAGAATGCCCAGAACTCTCAGGCCACACCCAACACCCAGAGCCCCCAGAAGGGCCAAGGCGCCCTGGGGGGAACCCAGGTGCCTGGTGGTGGGGCCAGAGGTGGACCCCAGCACACGGCCAAGTGGAGGCGAATGCAGGAGAATAAGAAGGGGCGAAACAGGAGAACCCATGAGCAACAGAGACCCCCGCGGAgtgtctgagacacacacacagcaacacacacacttacacacatatTGTACATTAAAACATAGACTTGCTATCCCATAAAGATATAATGTAGGATCCCACATAATGCAATACTCATGGTCATATGCTCATTCACACATAATATGTAGACAGAAATATACCATCCAAATGGAATGCTCTAAAACATAcacccaaagcacacacacacacacacagtagccatGGCTACTAGGTCATAGGGTTACAGacctgggtacacacacacacacgcacacgcacacacacacacacacacacacacacacacacacacacacacacacacacacactgcaaatacCCTGTGAAGACTTGGAGAAGACTGGCGACTAACAGGACATTGAAGACTGAGGCTAAACTGGAATCGTATGCGTACTGTACATGCTAACCATGTGGATATAGTGGCCCAGGGGGTACAATTTGAGGAACTGTGTAGTCCAGGTCCGTGTTGCAAGTGGGACAGAGTTATCTGGCGGACACATGGCCCTTCTGTACAGACGCTACTTCCGTATGGGACTGGGATGGGGTTAAAAAACATTCATTTTCAGTGAGGATGATACATATTCAGACCTCTGGACAAGTTTGGACAATGACCTCTACAGGACATTTCAGAAGACATTTCAGAAGGGGTTAAGACATTTAAGTTCAGTAGGGACGTCCATTACTGCAGCTACTGGCCTTGTTGACATGCGCAGAAGGAAGAGGAtgtccactatatagagaatggaAGAACTATGAGGATAAGAATCATTTGTCCAGTCGATTGCAAACTAGAACCGAAATACATCAAAAGAAGCACAGTCATTTTCAGAGAGTGAACTGCATTTCCCACAATACAGTTTGTCGGCTCAACTTTATTCAACTGATTCGATTCACAATGACTCTCATGAATGAGCACTTTGGGCTTGTACATAGAGCTTGACTGTCTTATAGGTCAAACAGATTAAATGGGGCACAGTTAGCTGATTAACAATCCACAACGGTGCCCTGCATATTGTTTATAGTTCAATAACAGAATTATTCAATATAAAACGACAAAATCCACATTAGCCTGTGATCTGTGCAGCAAAATCAAGCTTCTCTTCCTCCCAAGGCTTGAAAAGCATTGTGCATGTCGTAGTCAGTCAATATTCATGATTTGAATAAGCTATTTCTCGCCAGTTACTCGCTATGTAAGGTTTTTTTATGTTAAAAGGAGTCCTATGAAAGAAAAATctattttctgtttttatttgatatttacttctctctctccctacaaaCCACTGCATCCCTGTAGGGGTAAACAATTATGTAGTAGAATTTTTTGACCTGCCCCTTTAAGTTATTTTTCTTTCTTTGCTTTCTCCTGGAGTTGCGTGTGAATTTATAATTCCAGTCATATGTTCGTGCTCAGTCTGGAAAACAGACTGCCTATTGATTCTGTACATATACATACAACAACAAAATGACTCTTTatgtatgtaaatatatacaaCCAGAACACCACTGATTATTTATTTCTCATTGTTTTGTGAAAGGGTTGCATTTATTTTTGATATTCTGGTATTTTGGCTCATCAATAATCAAGAAAAAAAACTGTGGCACGTTGAGAAACACAAACGGACCAATGAGGACGGACTTCCTCTGTCAAGGACTCCGTTTTTTTCCGGGGGGGGGCGTGTTTCGGAAGTGAACCACGGGATGAAGGTGGGAGCAGGGGGTTGTTGTGTGTTTTACAGTATCCAGACTGAGAGCCTTCAGGATGATAAGCACAAGTTTCTCAAACCCTCTTCTACGTTTCTGTCTCTTCTGGTCTTTTCCTAAATGGCTCATTTTTCTACCCAGGAGGTGTTTTCGTTGGAGTTTGGAATCCCATCCACCTATCTCATTCGTTCATCCCAAATACTCATTTTATGTAAGATAATACTACCCAAAACCTGATAAACATTAGCTGTGAATTCCTATGTAAGAATTAGTAAGGAAAAGGTTCCAATCTAAACCTAGTCTGAGGACGCTGAGTTAAAGCTGCATGTGAATGCTACTTAAGTGCATCTTTTCTATTGTCTCTAGATGTTTCCTGTGAGAGGTAAAGGTCCCGTGGGCAACATGTGCAAGAGAGATGTGAATATTCTTTCTTTTTGCCAAAACAAAGATGGCAACATgtaccaggggtgtattcattaggaaccaaacagaagcaaacagGCCTAAACGGGGAGGGActaacctgaacttgtccaataacaaaCACACATTTTTGTCGCAAATCGTTTTCTGTAGCTAAACGTTTTGCTATGGTGTctgctaatgaatacaccccagtgaTGTTACTCCAACCCCAAAACTTGTATTAAGACCTTCAACTTTTCATACAACTATGTGTTTCCCCCTCAGTAAACAACAAGACTGATGTGTCATTGCAATAATGGACAGCAGATAGCAAGGTTTCCTGGTGGTTTGTGGTATGTTTCTGGTCTCTCACGGTGTGTAGGGTGGACGAGGAGAGAACAGATACCTCTGCTGTAACATGGTTCTTCCTGGCATGCGTTCAGTTGTCTAATTAAACATTTCCTGTAAAACcta
>TU1505944
cacacacacgcacacgcacacgcacacacacacacactgcaaatacCCTGTGAAGACTTGGAGAAGACTGGCGACTAACAGGACATTGAAGACTGAGGCTAAACTGGAATCGTATGCGTACTGTACATGCTAACCATGTGGATATAGTGGCCCAGGGGGTACAATTTGAGGAACTGTGTAGTCCAGGTCCGTGTTGCAAGTGGGACAGAGTTATCTGGCGGACACATGGCCCTTCTGTACAGACGCTACTTCCGTATGGGACTGGGATGGGGTTAAAAAACATTCATTTTCAGTGAGGATGATACATATTCAGACCTCTGGACAAGTTTGGACAATGACCTCTACAGGACATTTCAGAAGACATTTCAGAAGGGGTTAAGACATTTAAGTTCAGTAGGGACGTCCATTACTGCAGCTACTGGCCTTGTTGACATGCGCAGAAGGAAGAGGAtgtccactatatagagaatggaAGAACTATGAGGATAAGAATCATTTGTCCAGTCGATTGCAAACTAGAACCGAAATACATCAAAAGAAGCACAGTCATTTTCAGAGAGTGAACTGCATTTCCCACAATACAGTTTGTCGGCTCAACTTTATTCAACTGATTCGATTCACAATGACTCTCATGAATGAGCACTTTGGGCTTGTACATAGAGCTTGACTGTCTTATAGGTCAAACAGATTAAATGGGGCACAGTTAGCTGATTAACAATCCACAACGGTGCCCTGCATATTGTTTATAGTTCAATAACAGAATTATTCAATATAAAACGACAAAATCCACATTAGCCTGTGATCTGTGCAGCAAAATCAAGCTTCTCTTCCTCCCAAGGCTTGAAAAGCATTGTGCATGTCGTAGTCAGTCAATATTCATGATTTGAATAAGCTATTTCTCGCCAGTTACTCGCTATGTAAGGTTTTTTTATGTTAAAAGGAGTCCTATGAAAGAAAAATctattttctgtttttatttgatatttacttctctctctccctacaaaCCACTGCATCCCTGTAGGGGTAAACAATTATGTAGTAGAATTTTTTGACCTGCCCCTTTAAGTTATTTTTCTTTCTTTGCTTTCTCCTGGAGTTGCGTGTGAATTTATAATTCCAGTCATATGTTCGTGCTCAGTCTGGAAAACAGACTGCCTATTGATTCTGTACATATACATACAACAACAAAATGACTCTTTatgtatgtaaatatatacaaCCAGAACACCACTGATTATTTATTTCTCATTGTTTTGTGAAAGGGTTGCATTTATTTTTGATATTCTGGTATTTTGGCTCATCAATAATCAAGAAAAAAAACTGTGGCACGTTGAGAAACACAAACGGACCAATGAGGACGGACTTCCTCTGTCAAGGACTCCGTTTTTTTCCGGGGGGGGGCGTGTTTCGGAAGTGAACCACGGGATGAAGGTGGGAGCAGGGGGTTGTTGTGTGTTTTACAGTATCCAGACTGAGAGCCTTCAGGATGATAAGCACAAGTTTCTCAAACCCTCTTCTACGTTTCTGTCTCTTCTGGTCTTTTCCTAAATGGCTCATTTTTCTACCCAGGAGGTGTTTTCGTTGGAGTTTGGAATCCCATCCACCTATCTCATTCGTTCATCCCAAATACTCATTTTATGTAAGATAATACTACCCAAAACCTGATAAACATTAGCTGTGAATTCCTATGTAAGAATTAGTAAGGAAAAGGTTCCAATCTAAACCTAGTCTGAGGACGCTGAGTTAAAGCTGCATGTGAATGCTACTTAAGTGCATCTTTTCTATTGTCTCTAGATGTTTCCTGTGAGAGGTAAAGGTCCCGTGGGCAACATGTGCAAGAGAGATGTGAATATTCTTTCTTTTTGCCAAAACAAAGATGGCAACATgtaccaggggtgtattcattaggaaccaaacagaagcaaacagGCCTAAACGGGGAGGGActaacctgaacttgtccaataacaaaCACACATTTTTGTCGCAAATCGTTTTCTGTAGCTAAACGTTTTGCTATGGTGTctgctaatgaatacaccccagtgaTGTTACTCCAACCCCAAAACTTGTATTAAGACCTTCAACTTTTCATACAACTATGTGTTTCCCCCTCAGTAAACAACAAGACTGATGTGTCATTGCAATAATGGACAGCAGATAGCAAGGTTTCCTGGTGGTTTGTGGTATGTTTCTGGTCTCTCACGGTGTGTAGGGTGGACGAGGAGAGAACAGATACCTCTGCTGTAACATGGTTCTTCCTGGCATGCGTTCAGTTGTCTAATTAAACATTTCCTGTAAAACcta

Function

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945010.1 False 5990 mRNA 0.50 16 66655198 66713032
TU1505944 True 2310 lncRNA 0.41 2 66655198 66662918

Neighbor

gene id symbol gene type direction distance location
LOC110519130 LOC106609628 coding downstream 24597 66564918 ~ 66638625 (-)
LOC110515929 ptprr coding downstream 101613 66518773 ~ 66553585 (-)
LOC118938831 LOC106609809 coding downstream 141674 66417454 ~ 66513524 (-)
LOC110519161 NA coding downstream 239046 66413335 ~ 66416251 (-)
LOC110499708 LOC106576651 coding downstream 607299 66033061 ~ 66047899 (-)
LOC110490781 LOC106576552 coding upstream 95377 66808409 ~ 66920061 (-)
LOC110490597 LOC106609625 coding upstream 211010 66924042 ~ 66940668 (-)
LOC110490598 LOC106576550 coding upstream 227708 66940740 ~ 66942750 (-)
LOC118938832 LOC106609653 coding upstream 358282 67071314 ~ 67075634 (-)
LOC110511902 LOC106609654 coding upstream 366274 67079306 ~ 67084695 (-)
G1319620 NA non-coding downstream 37491 66617096 ~ 66617707 (-)
G1319559 NA non-coding downstream 92607 66551837 ~ 66562591 (-)
G1319602 NA non-coding downstream 107250 66544928 ~ 66547948 (-)
G1319793 NA non-coding upstream 75813 66788845 ~ 66792001 (-)
G1319803 LOC106576551 non-coding upstream 107400 66820432 ~ 66829319 (-)
G1319818 NA non-coding upstream 156262 66869294 ~ 66884898 (-)
G1319820 NA non-coding upstream 157384 66870416 ~ 66872828 (-)
G1319357 LOC106593594 other downstream 373090 66279045 ~ 66282108 (-)
G1318935 NA other downstream 1182034 65469967 ~ 65473164 (-)
G1318477 NA other downstream 1503798 65068277 ~ 65153287 (-)
LOC110499867 LOC106576572 other downstream 2169880 64481916 ~ 64636502 (-)
G1318164 LOC106576481 other downstream 2427523 64216504 ~ 64227675 (-)
G1319781 LOC106576551 other upstream 143147 66856179 ~ 66862281 (-)
G1319847 NA other upstream 247919 66960951 ~ 66961304 (-)
G1320139 NA other upstream 480084 67193116 ~ 67193493 (-)

Expression


Co-expression Network