LOC118938833 (LOC106608919)


Basic Information

Item Value
gene id LOC118938833
gene name LOC106608919
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 67785217 ~ 67797863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945060.1
GTCATTTCCGTCGacatagacacagacaggaaGGTTGCATTTGGCGACGTGGAAGTGACTAGTCGTCTGTTGTGAGGCTGTACACCAACCACACTGATCCACAAACATTCCGTAACAATGATAAAGAAATTTGACAAGAAGGACGAAGAGTCTGGAAGTGGCTCTAACCCTTTCCAGCATCTTGAAAAGAGTGCAGTGTTGCAAGAGGCTCGCATCTTCAACGAGACTCCGATCAACCCCAGAAGATGTCTCCACATCCTCACCAAGATCATTTACCTACTCAACCAGGGGGAGCACTTTGGAACTATGGAGGCGACCGAGGCCTTCTTCGCAATGACCAGGCTCTTCCAGTCCAATGATCAAACCCTGAGAAGGATGTGCTACCTGACCATCAAGGAGATGGCCAACATCTCTGAGGATGTCATCATTGTCACCAGCAGCCTAACCAAGGACATGACTGGCAAGGAGGATGTGTACAGAGGACCTGCCATCAGAGCTCTCTGCAGGATCACggatACCACCATGCTGCAGGCCATTGAGAGATACATGAAACAGGCCATTGTTGACAAAGTGCCCAGTGTGTCCAGCTCTGCCCTGGTCTCATCTCTGcACATGGTTAAGATGAGCTACGACGTGGTGAAGCGCTGGGTGAACGAGGCACAGGAGGCAGCTTCCAGTGACAACATCATGGTCCAGTACCACGCCCTGGGCCTGCTGTACCACCTGAGGAAGAATGACCGACTGGCCGTATCCAAGATGCTCAACAAGTTCACCAAGTCTGGCCTCAAGTCCCCCTTTGCCTACTGCATGCTCATCCGCATCGCCAGCAAGCTGTTGGAGGAGACCGAGGCAGGACATGACAGTCCCCTGTTTGACTTCATTGAGAGCTGTCTGAGGAACAAGCATGAGATGGTGGTGTACGAGGCAGCCTCGGCCATAGTCCACATGCCTAACTGTACTGCCAGAGAGCTGGCCCCCGCTGTCTCTGTCCTGCAGCTGTTCTGCAGCTCTCCCAAAGCAGCCCTGAGATACGCAGCTGTCAGGACCCTCAACAAGGTGGCGATGAAGCACCCGTCGGCGGTGACTGCGTGCAACCTGGACCTGGAGAACCTGATCACGGACTCGAACCGCAGCATCGCCACGCTGGCCATCACCACGCTGCTGAAGACAGGCAGCGAGAGCAGTGTGGACCGCCTCATGAAACAGATCTCCTCCTTCGTCTCTGAGATCTCTGACGAGTtcaagGTGGTGGTTGTGCAGGCCATCAGTGCCCTGTGTCAGAAGTATCCCAGAAAGCACAGCGTCATGATGAACTTCCTGTCCAACATGCTCCGAGACGACGGTGGCTTTGAGTACAAGCGGGCCATCGTGGACTGCATCATCAGCATCATCGAGGAGAACCCAGAGAGCAAGGAGACGGGGCTGGCCCACCTGTGTGAGTTCATCGAGGACTGTGAGCACACGGTGCTGGCCACCAAGATCCTTCACCTGCTGGGCAAGGAGGGCCCGCGCACGCCCTCGCCATCCAAGTACATCCGCTTCATCTTCAACCGCGTGGTGCTGGAGAGCGAGGCCGTCAGAGCCGCTGCGGTCAGTGCTCTGGCTAAATTTGGAGCCCAGAATGATGACCTTCTCCCCAGTGTGTTAGTCCTGATGCAGAGGTGTATGATGGACAGTGATGACGAGGTGAGGGACAGAGCCACCTTCTACATGAACGTGCTGCAGCAGAAGCAGAAAGCCCTCAACGCTGCCTACATTTTCAACGGTCTGTCGGTGTCTGTCCCGGGTCTGGAGAAGTCCCTCCACCAGTACACCCTGGAGCCCACAGAGAAGCCCTTCGATATGAAGTCTGTTCCCCTGGCCAACACACCCATCACAGAGCAGAAGACCGAATTCGCTCCTGTGGCCACTAGCAAGCTTCCAGAGAAACCAGGCCCGACGCGCCAAGACATCTACCAGGAACAACTGGCAGCCATTCCAGAATTCCAGGGCCTGGGTTCTCTCTTCAAGACGTCGGAGGCGGTGCAGCTGACCGAGGCGGAGACTGAGTATGTGGTGCGCTGCGTCAAGCACACCTTTGCCAGacacatggtgtttcagttcgaCTGCACCAACACGCTCAATGACCAGCTCCTGCAGAAGGTTATGGTTCAGATGGAGCCGTCAGAGGCCTACGAGGTTCTCCACTACGTCCCTGCTGCTAACCTGCCCTACAGCCAGCCTGGCTCCTGCTACAGCCTGGTCAGACTGCCTGAAGATGACCCCACCGCAGTGTCCTGTACGTTCAGCTGTACTCTGAAGTACCTGGTGAAAGACTGCGACCCCAACACAGGAGAGCCTGATGACGACGGTTACGATGACGAATATGTGCTGGAAGACTTGGAGGTGACTGTAGCAGACCACATCCAGAAGGTGTTGAAGCCTAACTTTGCCGCAGCCTGGGACGAGGTGGGAGACGACTTTGAGAAGGAGGAGACGTTCGCCCTGGCCTCTGTCAGAACGTTAGACGAGGcagttggtaacatcatcagttTCCTGGGCATGCAGCCCTGCGAGCGTTCAGACAAGGTCCCAGAAAACAAGAACTCACACATCCTCTTCCTTGCCGgTGTGTTCCGGGGGGGTCATGACGTGCTGGTACGCTCGCGCCTGGCCCTGGCCGACGGTGTCACTATGCAGGTGACGGTCCGCAGCTCGGATGAGACTGTTGTTGACATCATCCTAGCCTCCGTGGGCTAGAGGGGCCTGTTGTTCACCAACAACAACGTGTGAATACAATGGCATATTCTGATTTGTTTTGTCCACTTTTTCCCCATTCACAATATTCTCTAGGCAatgtccttcagtgctttatgtCGTTGGAATGTGTCTTGTGTTTTTGGGTAGTCCGAGATGGAAAACATtatggtgaggtgtgtgtactaCTGGCACCCTTCAACACAACTCATCTCTGTAGACTggccccagatctgtttgtgctgtataacCAACTCCAATGATCATTCATAGGTGTTTGCAaggcagcacaaacagatctgggaccaggctagtgtcATTAATGGCCCACGTTTTATCAAATCTATTAAATGTTGACCATGGAAATACTGAA
>TU1507110
ggaaGGTTGCATTTGGCGACGTGGAAGTGACTAGTCGTCTGTTGTGAGGCTGTACACCAACCACACTGATCCACAAACATTCCGTAACAATGATAAAGAAATTTGACAAGAAGGACGAAGAGTCTGGAAGTGGCTCTAACCCTTTCCAGCATCTTGAAAAGAGTGCAGTGTTGCAAGAGGCTCGCATCTTCAACGAGACTCCGATCAACCCCAGAAGATGTCTCCACATCCTCACCAAGATCATTTACCTACTCAACCAGGGGGAGCACTTTGGAACTATGGAGGCGACCGAGGCCTTCTTCGCAATGACCAGGCTCTTCCAGTCCAATGATCAAACCCTGAGAAGGATGTGCTACCTGACCATCAAGGAGATGGCCAACATCTCTGAGGATGTCATCATTGTCACCAGCAGCCTAACCAAGGACATGACTGGCAAGGAGGATGTGTACAGAGGACCTGCCATCAGAGCTCTCTGCAGGATCACggatACCACCATGCTGCAGGCCATTGAGAGATACATGAAACAGGCCATTGTTGACAAAGTGCCCAGTGTGTCCAGCTCTGCCCTGGTCTCATCTCTGcACATGGTTAAGATGAGCTACGACGTGGTGAAGCGCTGGGTGAACGAGGCACAGGAGGCAGCTTCCAGTGACAACATCATGGTCCAGTACCACGCCCTGGGCCTGCTGTACCACCTGAGGAAGAATGACCGACTGGCCGTATCCAAGATGCTCAACAAGTTCACCAAGTCTGGCCTCAAGTCCCCCTTTGCCTACTGCATGCTCATCCGCATCGCCAGCAAGCTGTTGGAGGAGACCGAGGCAGGACATGACAGTCCCCTGTTTGACTTCATTGAGAGCTGTCTGAGGAACAAGCATGAGATGGTGGTGTACGAGGCAGCCTCGGCCATAGTCCACATGCC

Function

NR:

description
coatomer subunit gamma-2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945060.1 False 3109 mRNA 0.54 21 67785217 67797863
TU1507110 True 922 TUCP 0.52 8 67793025 67797835

Neighbor

gene id symbol gene type direction distance location
LOC110499840 LOC106609638 coding downstream 406522 67371382 ~ 67378695 (-)
LOC110501001 LOC106609634 coding downstream 434501 67155424 ~ 67350716 (-)
LOC110511902 LOC106609654 coding downstream 700522 67079306 ~ 67084695 (-)
LOC118938832 LOC106609653 coding downstream 709583 67071314 ~ 67075634 (-)
LOC110490598 LOC106576550 coding downstream 842467 66940740 ~ 66942750 (-)
LOC118938834 LOC106593864 coding upstream 3211 67801074 ~ 67803118 (-)
LOC110501000 LOC106576558 coding upstream 12720 67810583 ~ 67922051 (-)
LOC110500996 LOC106609604 coding upstream 168371 67966234 ~ 67997921 (-)
LOC110513021 exoc4 coding upstream 200669 67998532 ~ 68239937 (-)
LOC110490613 ube2h coding upstream 1286942 69084805 ~ 69114891 (-)
G1320523 NA non-coding downstream 51153 67733788 ~ 67734064 (-)
G1320508 LOC106608917 non-coding downstream 81336 67699187 ~ 67703881 (-)
G1320478 NA non-coding downstream 133624 67650571 ~ 67651593 (-)
G1320370 NA non-coding downstream 239068 67545893 ~ 67546149 (-)
G1320369 NA non-coding downstream 239388 67545177 ~ 67545829 (-)
G1320612 NA non-coding upstream 28927 67826790 ~ 67828937 (-)
G1320628 NA non-coding upstream 81475 67879338 ~ 67879591 (-)
G1320640 NA non-coding upstream 113233 67911096 ~ 67911466 (-)
G1321246 NA non-coding upstream 134288 67932151 ~ 67932826 (-)
G1320139 NA other downstream 591724 67193116 ~ 67193493 (-)
G1319847 NA other downstream 823913 66960951 ~ 66961304 (-)
LOC110490781 LOC106576552 other downstream 889525 66808409 ~ 66920061 (-)
G1321652 nrf1 other upstream 1233163 69031026 ~ 69073276 (-)
LOC110490790 LOC106609779 other upstream 1357663 69149477 ~ 69163694 (-)
G1321729 NA other upstream 1422440 69220303 ~ 69223028 (-)
G1321997 NA other upstream 1764447 69562310 ~ 69563040 (-)
G1320534 NA non-coding downstream 682 67792140 ~ 67792343 (-)
G1319781 LOC106576551 other downstream 930744 66856179 ~ 66862281 (-)

Expression


Co-expression Network