LOC118938834 (LOC106593864)


Basic Information

Item Value
gene id LOC118938834
gene name LOC106593864
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 67801074 ~ 67803118 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945073.1
CGAATGAATTCCAAACGAATGGACGTGCGAGCCAAATTCGTGATCAGAAGACGCGGAAAGAACAAGGCGAGAACGAGGTTGGGAGATCAGGGAAGCCCGAATTTTAAAACGCTGGGATTGTCAATATTTTATAGCCTATTCAATTGTTATCTAGAGTGTTTTTCTTTGTTTGTACTGGTCACACGTGACTTTCTGGCGGAAACTGACTTCTAGAATTACAGTGCACGGAACTTGGACATCATGATGCCGTTCCTAAGAACCCTGGTTGTGCTGGCTGTCCTCTGCGCGCCAACCTCCAGCCTCTGTCTCAGACTGTACCAGAGCGACTACAACCTCCTCTGTGACGATGACATACTAGCTGAGGTCCAGACGAACGACGTTCCCAGTGACACGTTCCCAGTGTCGGAAAGCTTGGGCTCCCTCTTCAAGTCAGGAGACACTCTCTCCTCCGCAGAGTCGCGGGAGAAAAGGACGTCGACTTACCCCGCCAACTACAGGTTTCTCAGTCAGACGCAGCTAAGGAGTAAGATGTTCCAGAACAGCATTAATAATGATCGGCTACGCAAGTTTACCCTGTCTCTAGATGTGCCCACCAACATCATGAACATTCTCTTTGACATCCAAAAGTCCAAGAACCTACGCGCAAAAGCGGCCGACAACGCGCGTCTGATGGCGCAGATTGGACGAAGGAAGAGACAGTAGACGGTTGAAGCTGCTACCCTGATTATCCATTACATATTAGATTTTCACTCTGACAAATACGTTTTGCTGGAAGTTTTATTTTTCCTCAAATCAAACTTTCAGATGCAGTATTtgtgagatgtttttttttctgtggGTATGATCTATCAAATTTAAATATGAAACATAGGGATTATTGAGATTTACTTTTCTGAAGTACAATTGGATTGTTTACTGTACAGGCCTATTCCATTTTAGAATCCCTGAAATTGAATGAAAATCAAAAGACAATTCGAGATAATTTTGAACTAGTCTATACACTGAATGATTTTCATTTATCTTCAGAATATACATTTAAATTCATTAAAATGAAAGTACTTTCAAAATAAGGTTAGGCCCTTTAAAGATATACAACTTATAGTCTTCCACTGGAGTGTTAAAGATCGAACCAGGaaatgtgttgtaatgagagggGTCTTTGAAATTAGATAAGGCAAatgaggaaatatgtcaattgCATATGCATAAAATCAGTGGTTAAAGTGTAATTAGCCTGTCAATGGAAATGGTTTGCATCTCTTCTCATTTGTGCCCGCGGTTTATAGGAAAATCAAGGCATGCATATGCTTGAAATACAGGACAGTACGGTACAATACAAATTCTGTGAACAAATTGCTTTCATTGAAATTCGCACGCATGTTGCGGCATATTTAGTGTAAAGAGAAGCGAGTTAGCCTATATACCTTTGTGAATAGACGCTAGAATGTGAAATGATTAGGAGTTATTTCAAGGAAAATGCATGGTAGCCTCAATGTTTGATCATCAAATGTCTGTTATTTTTATACACAAAGGGATTATTTTTCCTCAAATAAAAGCAGATGAATTAAACGTTGTCTTCAATAACGGCCATTTTCACATTTAGAAGGTGTTGTAATTTAGGTGTTAGGCATAatcaagtcagtcagtcagctaatgGTAAACAACAGCTTTGTCTATATGAAGTAAATATATTATCGTCCCTATATATGCTATAGCTTTCAGGTgcgttaaacacacaca

Function

NR:

description
urocortin-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945073.1 True 1740 mRNA 0.40 2 67801074 67803118

Neighbor

gene id symbol gene type direction distance location
LOC118938833 LOC106608919 coding downstream 3211 67785217 ~ 67797863 (-)
LOC110499840 LOC106609638 coding downstream 422379 67371382 ~ 67378695 (-)
LOC110501001 LOC106609634 coding downstream 450358 67155424 ~ 67350716 (-)
LOC110511902 LOC106609654 coding downstream 716379 67079306 ~ 67084695 (-)
LOC118938832 LOC106609653 coding downstream 725440 67071314 ~ 67075634 (-)
LOC110501000 LOC106576558 coding upstream 7465 67810583 ~ 67922051 (-)
LOC110500996 LOC106609604 coding upstream 163116 67966234 ~ 67997921 (-)
LOC110513021 exoc4 coding upstream 195414 67998532 ~ 68239937 (-)
LOC110490613 ube2h coding upstream 1281687 69084805 ~ 69114891 (-)
LOC110490606 LOC106609763 coding upstream 1315659 69118777 ~ 69127452 (-)
G1320534 NA non-coding downstream 8731 67792140 ~ 67792343 (-)
G1320523 NA non-coding downstream 67010 67733788 ~ 67734064 (-)
G1320508 LOC106608917 non-coding downstream 97193 67699187 ~ 67703881 (-)
G1320478 NA non-coding downstream 149481 67650571 ~ 67651593 (-)
G1320370 NA non-coding downstream 254925 67545893 ~ 67546149 (-)
G1320612 NA non-coding upstream 23672 67826790 ~ 67828937 (-)
G1320628 NA non-coding upstream 76220 67879338 ~ 67879591 (-)
G1320640 NA non-coding upstream 107978 67911096 ~ 67911466 (-)
G1321246 NA non-coding upstream 129033 67932151 ~ 67932826 (-)
G1320139 NA other downstream 607581 67193116 ~ 67193493 (-)
G1319847 NA other downstream 839770 66960951 ~ 66961304 (-)
LOC110490781 LOC106576552 other downstream 905382 66808409 ~ 66920061 (-)
G1321652 nrf1 other upstream 1227908 69031026 ~ 69073276 (-)
LOC110490790 LOC106609779 other upstream 1352408 69149477 ~ 69163694 (-)
G1321729 NA other upstream 1417185 69220303 ~ 69223028 (-)
G1321997 NA other upstream 1759192 69562310 ~ 69563040 (-)

Expression


Co-expression Network