LOC110490606 (LOC106609763)


Basic Information

Item Value
gene id LOC110490606
gene name LOC106609763
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69118777 ~ 69127452 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945097.1
ACATTGGCCACGTGAGTTGAAATCTAAGCAGGGCATTATCCCAAGCGGAACAGATAGCGTTCCTCTTTCAGGGGGGAAGATTTAGCATCTAGCACCGACCGATCATGGCGGCCCTTGGCAGTCGTGGAAATCGTCTTGACAATTCTCCTAACAGACAATTAAAATCTGTTTTAGCATCTCCAGAGAAAGTTCGTGAACTTCTCAACGCAGGTGTGTTGTCGGATGAAAACAGATCAACTGGTGTTCAGGGGGAGCTGGATAAGGTGGCACCAAACGGTAACAGTCAAGTTCCTTGTGAAGCGTCTAACAAAGAAGCCTTTTTCACAAGAGTGGAGTCCTACTCTTGTCTGAGATGGGCAGGAAAGCCCCGGACTCTCTCCCCCCTGAAATGTGCCAGCTATGGCTGGATCAACGTGGGATGTGACATGTTGAAATGTTCAAGTTGCCAGGCTTTCCTCTGTGCATCACTACAACCAACCCTGGACTTCCAGAAAtATGATTCCCGGATAGCAGAGATAACTCGACAACTACAGACACAGCATGAGAAGTTTTGTCCATGGCCAGACTTTCCATGCCCAGACCGGTTCTGGCTTGTCCCGGCGAATGAGCCATCAGTGCTGCTCAGTGCTTTCCTGGTGCGCTTTCACACCACCTGTCTCCTGGAGCAGCAGCTACCTGCCATGAAGCCAGAACAGCTTAAAACCATGTCTTTGACGGAGGATGTGATTAGCACTCTACTGCAGTTGATTGAGGATGAACAGAAGAAGCAGGGCAGGTCCCCTCTGAAGTCCACCTCTGATGCCCTGTCTGTCCAGGTGGCTGCCTGCATCGTGGCCCTCTGTGGCTGGACTGGAAGCCCAGCTCTGCACGCCACGAGCCTACCCCTCCTCACCTGCTCCTTCTGCATGCGCAAAGTGGGTCTGTGGAACTTCCACCAGATGGAGGGAACGGgaaaagaggtagagggagacgtCCCAAAGTCCCCCACCACCCCGACGTCATCTACACCCCTGCCTGCACCCGAGGCCCAGGGGGACAGGAAGACTCCCACCTCGCCCTCACCTTCTCCTACTCCCTACCGCAGGGGGCTGCGGAGCCAGGACAAGACCAGAGGCTCAGAACAGCCTGTGGGCAATCCGTCCCCCATGGTGGTCCGCACCCGCAGCAGGGACTCTCCCAGCCCCAGCGAGGAGCAGCTTGGCCCTCTGCCCAGGGGGAAGAGGCCCATGACCGGGGGCCGAGGCCAGGGGGAggggacagggagcgaggggacTGCTTCGGGGGGCTCCAGCCCCCAACGCAACCCCAAACGCATGTGCCTCTCCTCAGCCAGTAGCCCTGATGGCCCCCTGCATAGGAGTGTGTTTGACCCACTAGCCCAGCACAGAGACTGGTGCCCCTGGGTGAATGTAGGCAAGGAGAACACCCAGCCCACTGGTGGTGTACCCCTGCTGGGCCAAGACGGAGAGCACCAGCAGGGCTGGAAGGCTGCACtgactctcctcctccccatgaaGAAGCACTTCAGCCCAAACAAGGCAGCCAGTCCCCTACAGGGTCCACATGACAAGTCTAAAAGAGTGTTTGCTATCTTCCGTCAGTGGCAGGTATCTTCCCCATCTCAGTAAGGTCTTCCTCTCCACCCCAGAGACAGGATCATCGTGACATTCTCCATTGATATTCTTCCCTGTGGTATGCTGTACTGTACTAGTTGCACTGACAGTGGTTTCATATCCGTGTGTTTCTCCCATCCGTTAAGTCAGGTTTACAATCATGGGGGGGTGATATGAATTGAAGTACAGATGAGGATGGTTTTGCCAATGAACTTTGGAATGTTGCCCGGCTGCATGGTTCGAAAGCGATGAGTTCTTCACAGACATTGCCCACCAAGGAAATTCTGTTCTGAATGCAGTTTTTTAAAAGTGGGTTGACTTTACACTAAACTTAGAACCCACAGAATGCAATGGCACACGGACACTGCCTGGTCTCAGACCTGCGCCTTGCCTCGTTTGTTTTACCTCCTATGAAGACCACATGTGCTCTTGTCCTGTCGTGTGTCTATGGCATATATGAGGGACAAGGACTCTGAAATCTACCCCGTGAGAAAGAGCCATCTGGCTTACACTGGAAAAAAAGTCAAATGTATTATCTTCAAAGATCTGTCATGTAGAAGTTTTTTACCCTAAAAGCTGTGAGGAAGTCGGTTTTTTTTTCAGTGCTGTTTTTTTTCCAGAGAATATAAAGACGTAGATATAGGATTTCTAAACTTTAGGCGTACTAAATTTTTTTGCAATTTTGTTACACAAATATTTTTAGAAACTTCGAAAAAGCTTTTTGGTTGTGTTAGTTTGCAAGTCTAAAGTgctaaagggagggagggggaaatgtTTTACTTGTAGATGTTAAACCAGGTAGAACACATCATTTGCCGTAGAAGTCAGAGGATGTTTGGGGAGAACATTGATTTAGTCTTTCATTCCATTTGCCTTTGTGGTTTTCTTAGCCAATGCAGTCCCTTCTACTGTGCATGTGCTTTTACTCTCCTAAGAGGATTTAATAAAATGTTCCTCTTTCTGCATG
>XM_036945096.1
TAAACATTGGCCACGTGAGTTGAAATCTAAGCAGGGCATTATCCCAAGCGGAACAGATAGCGTTCCTCTTTCAGGGGGGAAGATTTAGCATCTAGCACCGACCGATCATGGCGGCCCTTGGCAGTCGTGGAAATCGTCTTGACAATTCTCCTAACAGACAATTAAAATCTGTTTTAGCATCTCCAGAGAAAGTTCGTGAACTTCTCAACGCAGGTGTGTTGTCGGATGAAAACAGATCAACTGGTGTTCAGGGGGAGCTGGATAAGGTGGCACCAAACGGTAACAGTCAAGTTCCTTGTGAAGCGTCTAACAAAGAAGCCTTTTTCACAAGAGTGGAGTCCTACTCTTGTCTGAGATGGGCAGGAAAGCCCCGGACTCTCTCCCCCCTGAAATGTGCCAGCTATGGCTGGATCAACGTGGGATGTGACATGTTGAAATGTTCAAGTTGCCAGGCTTTCCTCTGTGCATCACTACAACCAACCCTGGACTTCCAGAAAtATGATTCCCGGATAGCAGAGATAACTCGACAACTACAGACACAGCATGAGAAGTTTTGTCCATGGCCAGACTTTCCATGCCCAGACCGGTTCTGGCTTGTCCCGGCGAATGAGCCATCAGTGCTGCTCAGTGCTTTCCTGGTGCGCTTTCACACCACCTGTCTCCTGGAGCAGCAGCTACCTGCCATGAAGCCAGAACAGCTTAAAACCATGTCTTTGACGGAGGATGTGATTAGCACTCTACTGCAGTTGATTGAGGATGAACAGAAGAAGCAGGGCAGGTCCCCTCTGAAGTCCACCTCTGATGCCCTGTCTGTCCAGGTGGCTGCCTGCATCGTGGCCCTCTGTGGCTGGACTGGAAGGTTtgtttccaccttctcctcttgCTGTTTTTGCAGCCCAGCTCTGCACGCCACGAGCCTACCCCTCCTCACCTGCTCCTTCTGCATGCGCAAAGTGGGTCTGTGGAACTTCCACCAGATGGAGGGAACGGgaaaagaggtagagggagacgtCCCAAAGTCCCCCACCACCCCGACGTCATCTACACCCCTGCCTGCACCCGAGGCCCAGGGGGACAGGAAGACTCCCACCTCGCCCTCACCTTCTCCTACTCCCTACCGCAGGGGGCTGCGGAGCCAGGACAAGACCAGAGGCTCAGAACAGCCTGTGGGCAATCCGTCCCCCATGGTGGTCCGCACCCGCAGCAGGGACTCTCCCAGCCCCAGCGAGGAGCAGCTTGGCCCTCTGCCCAGGGGGAAGAGGCCCATGACCGGGGGCCGAGGCCAGGGGGAggggacagggagcgaggggacTGCTTCGGGGGGCTCCAGCCCCCAACGCAACCCCAAACGCATGTGCCTCTCCTCAGCCAGTAGCCCTGATGGCCCCCTGCATAGGAGTGTGTTTGACCCACTAGCCCAGCACAGAGACTGGTGCCCCTGGGTGAATGTAGGCAAGGAGAACACCCAGCCCACTGGTGGTGTACCCCTGCTGGGCCAAGACGGAGAGCACCAGCAGGGCTGGAAGGCTGCACtgactctcctcctccccatgaaGAAGCACTTCAGCCCAAACAAGGCAGCCAGTCCCCTACAGGGTCCACATGACAAGTCTAAAAGAGTGTTTGCTATCTTCCGTCAGTGGCAGGTATCTTCCCCATCTCAGTAAGGTCTTCCTCTCCACCCCAGAGACAGGATCATCGTGACATTCTCCATTGATATTCTTCCCTGTGGTATGCTGTACTGTACTAGTTGCACTGACAGTGGTTTCATATCCGTGTGTTTCTCCCATCCGTTAAGTCAGGTTTACAATCATGGGGGGGTGATATGAATTGAAGTACAGATGAGGATGGTTTTGCCAATGAACTTTGGAATGTTGCCCGGCTGCATGGTTCGAAAGCGATGAGTTCTTCACAGACATTGCCCACCAAGGAAATTCTGTTCTGAATGCAGTTTTTTAAAAGTGGGTTGACTTTACACTAAACTTAGAACCCACAGAATGCAATGGCACACGGACACTGCCTGGTCTCAGACCTGCGCCTTGCCTCGTTTGTTTTACCTCCTATGAAGACCACATGTGCTCTTGTCCTGTCGTGTGTCTATGGCATATATGAGGGACAAGGACTCTGAAATCTACCCCGTGAGAAAGAGCCATCTGGCTTACACTGGAAAAAAAGTCAAATGTATTATCTTCAAAGATCTGTCATGTAGAAGTTTTTTACCCTAAAAGCTGTGAGGAAGTCGGTTTTTTTTTCAGTGCTGTTTTTTTTCCAGAGAATATAAAGACGTAGATATAGGATTTCTAAACTTTAGGCGTACTAAATTTTTTTGCAATTTTGTTACACAAATATTTTTAGAAACTTCGAAAAAGCTTTTTGGTTGTGTTAGTTTGCAAGTCTAAAGTgctaaagggagggagggggaaatgtTTTACTTGTAGATGTTAAACCAGGTAGAACACATCATTTGCCGTAGAAGTCAGAGGATGTTTGGGGAGAACATTGATTTAGTCTTTCATTCCATTTGCCTTTGTGGTTTTCTTAGCCAATGCAGTCCCTTCTACTGTGCATGTGCTTTTACTCTCCTAAGAGGATTTAATAAAATGTTCCTCTTTCTGCATG
>TU1508632
AACTACTAAACTGACCCATGAGCAGCATCTAACTTCACCCTACTCCGGTGCATGCCACATGCTATGCAACAGTCGCCTGTTGACTTTCTCCATGCTCTTGTTTTCAGGATGGCCCCCTGCATAGGAGTGTGTTTGACCCACTAGCCCAGCACAGAGACTGGTGCCCCTGGGTGAATGTAGGCAAGGAGAACACCCAGCCCACTGGTGGTGTACCCCTGCTGGGCCAAGACGGAGAGCACCAGCAGGGCTGGAAGGCTGCACtgactctcctcctccccatgaaGAAGCACTTCAGCCCAAACAAGGCAGCCAGTCCCCTACAGGGTCCACATGACAAGTCTAAAAGAGTGTTTGCTATCTTCCGTCAGTGGCAGGTATCTTCCCCATCTCAGTAAGGTCTTCCTCTCCACCCCAGAGACAGGATCATCGTGACATTCTCCATTGATATTCTTCCCTGTGGTATGCTGTACTGTACTAGTTGCACTGACAGTGGTTTCATATCCGTGTGTTTCTCCCATCCGTTAAGTCAGGTTTACAATCATGGGGGGGTGATATGAATTGAAGTACAGATGAGGATGGTTTTGCCAATGAACTTTGGAATGTTGCCCGGCTGCATGGTTCGAAAGCGATGAGTTCTTCACAGACATTGCCCACCAAGGAAATTCTGTTCTGAATGCAGTTTTTTAAAAGTGGGTTGACTTTACACTAAACTTAGAACCCACAGAATGCAATGGCACACGGACACTGCCTGGTCTCAGACCTGCGCCTTGCCTCGTTTGTTTTACCTCCTATGAAGACCACATGTGCTCTTGTCCTGTCGTGTGTCTATGGCATATATGAGGGACAAGGACTCTGAAATCTACCCCGTGAGAAAGAGCCATCTGGCTTACACTGGAAAAAAAGTCAAATGTATTATCTTCAAAGATCTGTCATGTAGAAGTTTTTTACCCTAAAAGCTGTGAGGAAGTCGGTTTTTTTTTCAGTGCTGTTTTTTTTCCAGAGAATATAAAGACGTAGATATAGGATTTCTAAACTTTAGGCGTACTAAATTTTTTTGCAATTTTGTTACACAAATATTTTTAGAAACTTCGAAAAAGCTTTTTGGTTGTGTTAGTTTGCAAGTCTAAAGTgctaaagggagggaggggg
>TU1508633
CCGATCATGGCGGCCCTTGGCAGTCGTGGAAATCGTCTTGACAATTCTCCTAACAGACAATTAAAATCTGTTTTAGCATCTCCAGAGAAAGTTCGTGAACTTCTCAACGCAGGTGTGTTGTCGGATGAAAACAGATCAACTGGTGTTCAGGGGGAGCTGGATAAGGTGGCACCAAACGGTAACAGTCAAGTTCCTTGTGAAGCGTCTAACAAAGAAGCCTTTTTCACAAGAGTGGAGTCCTACTCTATATCCTTTCTGCATCCACGCTGTGACATTACATGTTATACTGCCAA
>TU1508634
CCGATCATGGCGGCCCTTGGCAGTCGTGGAAATCGTCTTGACAATTCTCCTAACAGACAATTAAAATCTGTTTTAGCATCTCCAGAGAAAGTTCGTGAACTTCTCAACGCAGGTGTGTTGTCGGATGAAAACAGATCAACTGGTGTTCAGGGGGAGCTGGATAAGGTGGCACCAAACGGTAACAGTCAAGTTCCTTGTGAAGCGTCTAACAAAGAAGCCTTTTTCACAAGAGTGGAG

Function

NR:

description
nuclear-interacting partner of ALK-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945097.1 False 2580 mRNA 0.51 10 69118777 69127449
XM_036945096.1 False 2619 mRNA 0.51 10 69118777 69127452
TU1508632 False 1149 lncRNA 0.46 2 69118975 69120412
TU1508633 False 293 lncRNA 0.45 2 69122839 69127351
TU1508634 True 237 lncRNA 0.46 2 69122895 69127351

Neighbor

gene id symbol gene type direction distance location
LOC110490613 ube2h coding downstream 3886 69084805 ~ 69114891 (-)
LOC110513021 exoc4 coding downstream 878840 67998532 ~ 68239937 (-)
LOC110500996 LOC106609604 coding downstream 1120856 67966234 ~ 67997921 (-)
LOC110501000 LOC106576558 coding downstream 1196726 67810583 ~ 67922051 (-)
LOC118938834 LOC106593864 coding downstream 1315659 67801074 ~ 67803118 (-)
LOC110490790 LOC106609779 coding upstream 22025 69149477 ~ 69163694 (-)
smo LOC106609776 coding upstream 36703 69164155 ~ 69184500 (-)
LOC110490615 tspan33 coding upstream 57203 69184655 ~ 69201940 (-)
LOC110490619 psmc2 coding upstream 95619 69223071 ~ 69227704 (-)
LOC110490620 pmpcb coding upstream 106261 69233713 ~ 69237810 (-)
G1321655 NA non-coding downstream 15442 69057052 ~ 69103335 (-)
G1321688 NA non-coding downstream 36697 69081729 ~ 69082080 (-)
G1321652 nrf1 non-coding downstream 59462 69031026 ~ 69073276 (-)
G1321677 NA non-coding downstream 64526 69053909 ~ 69054251 (-)
G1321657 NA non-coding downstream 82744 69005326 ~ 69036033 (-)
G1321720 NA non-coding upstream 42710 69170162 ~ 69170509 (-)
G1321730 LOC106576505 non-coding upstream 85989 69213441 ~ 69213663 (-)
G1321739 NA non-coding upstream 123783 69251235 ~ 69251458 (-)
G1321740 NA non-coding upstream 124509 69251961 ~ 69252193 (-)
LOC118938833 LOC106608919 other downstream 1320942 67785217 ~ 67797863 (-)
G1320139 NA other downstream 1925284 67193116 ~ 67193493 (-)
LOC110511902 LOC106609654 other downstream 2034172 67079306 ~ 67084695 (-)
G1321729 NA other upstream 92851 69220303 ~ 69223028 (-)
G1321997 NA other upstream 434858 69562310 ~ 69563040 (-)
G1322348 NA other upstream 771233 69897748 ~ 69899703 (-)
G1323036 NA other upstream 1409000 70536452 ~ 70537139 (-)

Expression


Co-expression Network