LOC110490619 (psmc2)


Basic Information

Item Value
gene id LOC110490619
gene name psmc2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69223071 ~ 69227704 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945111.1
CGACCCCCATTTCCGGTTAATTGTGCACAGCGGAAGTAACAAACCTGCTGTGTAATCCTTGTTGTGCTGAAGCACAAAATCTTCTAGTAAAACTTTATACACAGAATAACATTAGCAATGCCAGATTATTTGGGAGGCGATCAAAGGAAAATCAAAGATGCCAAAGAAGAGGAGGATAAACCTATCAGATCTTTGGATGAAGGAGACATTGCCTTATTGAAAACTTATGGCCAGAGCACTTACTCCAGACAGATTAAGCAAGTGGAAGATGACATCCAAAACCTGCTCAAGAAGATCAATGAACTAACCGGCATTAAGGAATCGGACACTGGCCTGGCTCCTCCTGCACTTTGGGATCTGGCTGCAGACAAACAGACTCTGCAGAGCGAGCAGCCACTGCAGGTGGCAAGATGCACAAAGATCATCAATGCTGACTCTGAAGATCCAAAGTACATCATCAATGTGAAGCAGTTTGCCAAGTTTGTGGTGGACCTGAGTGACCAGGTGGCCCCCACTGACATAGAGGAGGGTATGAGAGTCGGTGTGGACAGAAACAAGTACCAGATCCACATTCCTCTGCCTCCCAAGATTGACCCCACAGTCACTATGATGCAGGTGGAGGAGAAGCCTGATGTGACCTACAGTGACGTGGGTGGATGTAAAGAGCAGATTGAGAAGCTCAGGGAGGTGGTGGAGACCCCACTGCTCCATCCCGAGAGGTTTGTCAACCTGGGTATTGAGCCCCCGAAGGGGGTTCTGTTGTTCGGCCCACCTGGTACAGGTAAAACCCTGTGTGCCAGAGCCGTGGCCAACCGCACCGATGCCTGCTTCATCAGGGTCATCGGCTCAGAGCTGGTCCAGAAATACGTGGGAGAGGGTGCCAGAATGGTGCGGGAGCTTTTCGAGATGGCCAGAACCAAGAAGGCATGTCTCATCTTCTTCGACGAAATTGACGCTATTGGAGGGGCCCGTTTTGATGATGGTGCCGGTGGGGACAATGAGGTCCAGAGGACCATGCTGGAGCTCATCAACCAGCTGGACGGCTTCGACCCCAGGGGGAACATCAAGGTCCTGATGGCCACCAACCGGCCCGACACCCTGGACCCCGCCCTCATGAGGCCCGGGCGACTGGACAGGAAGATTGAGTTCAGCCTGCCAGACCTGGAGGGTCGTACTCACATCTTCAAGATCCATGCCCGCTCCATGAGCGTGGAGAGAGACATCCGCTTCGAGCTGCTGGCTCGTCTCTGTCCCAACAGCACAGGTGCCGAGATTCGCAGCGTGTGCACGGAGGCGGGTATGTTCGCCATCCGCGCCCGCCGGAAGATCGCCACTGAGAAGGACTTCCTGGAGGCGGTCAACAAGGTCATCAAGTCCTACGCCAAGTTCAGCGCCACCCCAAGATACATGACCTACAACTAAACAGCGCCGTCTGCATCTGGGGTTGTTTCCCAAGAGGCTGGGGAGGAGAGTCAATGCTCATTTTCTGTCATTAAACATTGCCTACACAATTAAAGTTTATTCCAGTTTGGA

Function

symbol description
psmc2 Predicted to enable TBP-class protein binding activity. Predicted to be involved in positive regulation of RNA polymerase II transcription preinitiation complex assembly. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm. Predicted to be part of proteasome regulatory particle, base subcomplex. Predicted to be active in dendritic spine. Orthologous to human PSMC2 (proteasome 26S subunit, ATPase 2).

NR:

description
PREDICTED: 26S protease regulatory subunit 7

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K03061 PSMC2, RPT1; 26S proteasome regulatory subunit T1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945111.1 True 1533 mRNA 0.53 12 69223071 69227704

Neighbor

gene id symbol gene type direction distance location
LOC110490615 tspan33 coding downstream 21131 69184655 ~ 69201940 (-)
smo LOC106609776 coding downstream 38571 69164155 ~ 69184500 (-)
LOC110490790 LOC106609779 coding downstream 59377 69149477 ~ 69163694 (-)
LOC110490606 LOC106609763 coding downstream 95619 69118777 ~ 69127452 (-)
LOC110490613 ube2h coding downstream 108180 69084805 ~ 69114891 (-)
LOC110490620 pmpcb coding upstream 6009 69233713 ~ 69237810 (-)
LOC110490621 kcnc2 coding upstream 105516 69333220 ~ 69417065 (-)
LOC110499783 LOC106609772 coding upstream 197136 69424840 ~ 69430808 (-)
LOC110500968 LOC106609767 coding upstream 274833 69502537 ~ 69513403 (-)
LOC110511775 LOC106609789 coding upstream 286199 69513903 ~ 69526128 (-)
G1321730 LOC106576505 non-coding downstream 9408 69213441 ~ 69213663 (-)
G1321720 NA non-coding downstream 52562 69170162 ~ 69170509 (-)
G1321655 NA non-coding downstream 119736 69057052 ~ 69103335 (-)
G1321739 NA non-coding upstream 23531 69251235 ~ 69251458 (-)
G1321740 NA non-coding upstream 24257 69251961 ~ 69252193 (-)
G1321747 NA non-coding upstream 39888 69267592 ~ 69267847 (-)
G1321748 NA non-coding upstream 40347 69268051 ~ 69268455 (-)
G1321778 NA non-coding upstream 77764 69305468 ~ 69305834 (-)
G1321729 NA other downstream 43 69220303 ~ 69223028 (-)
G1321652 nrf1 other downstream 149795 69031026 ~ 69073276 (-)
LOC110513021 exoc4 other downstream 1046689 67998532 ~ 68239937 (-)
LOC118938833 LOC106608919 other downstream 1425236 67785217 ~ 67797863 (-)
G1321997 NA other upstream 334606 69562310 ~ 69563040 (-)
G1322348 NA other upstream 670981 69897748 ~ 69899703 (-)
G1323036 NA other upstream 1308748 70536452 ~ 70537139 (-)
LOC110490645 LOC106576589 other upstream 1315652 70543356 ~ 70547418 (-)
G1323207 NA other upstream 1797547 71025251 ~ 71039522 (-)

Expression


Co-expression Network