LOC110490620 (pmpcb)


Basic Information

Item Value
gene id LOC110490620
gene name pmpcb
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69233713 ~ 69237810 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945110.1
GTGTTACATGCTCATTACGGCAGCTCACTGAATAATCGCACTTGCGCAATAGCCATGTCACAAATAATCAACATGGCGACGTCCTTACATCGCCTTACCTCCGCTGGGAGATATCTTGCAAAACGGAATTTATTGAAGACTAATGTCTTAACCAGGTCCATTGTTGGTTCACACAGACTATTGGCTACGCAGGCCGCCAACCAAGTGATGTTAAATGTCCCTGAAACCAAGGTTACCACCTTAGAAAATGGACTACGTGTTGCATCTGAGGATTCCGGTCTTTCGACTTGCACAGTTGGTCTCTGGATAGATGCAGGGAGTCGTTATGAGAATGAGAGGAACAATGGCACTGCTCATTTCTTGGAACACATGGCTTTCAAGGGTACAAGGAAGCGCTCCCAGCTTGACCTGGAGCTGGAGATTGAAAATATGGGGGCCCATCTGAATGCTTACACCTCGAGGGAGCAGACTGTGTATTACGCCAAAGCATTCACAAAGGACCTTCCCAGAGCGGTAGAGATCCTGGCAGACATCATCCAGAACAGCACATTGGGGGGAGCAGAGATCGAGCGAGAGCGAGGGGTCATCCTCCGAGAGATGCAGGAAGTAGAGACCAACCTACAGGAAGTGGTGTTTGATTACCTCCACGCCACAGCTTATCAAGCCACAGCGCTGGGCAGAACCATCCTGGGCCCTACGGAGAACATCAAAACAATAAACAGAGGAGACCTTGTTGAATACATCACGACTCACTACAAAGGACCGAGAATAGTGTTGGCTGCTGCTGGGGGGGTTTCACACAATGAATTGATAGATTTGGCCAAGTACCACTTTGGGAATCTTCCTGCCAGATACAAGGGAGAGGCTCCAACTTTCCCACAATGTGACTTTACTGGAAGTGAGATCCGAGTTCGTGATGACAAGATGCCCCTGGCACACATTGCCATTGCTGTGGAAGCAGTGGGCTGGTCGCACCCCGATACCATTCCCCTTATGGTGGCAAACACACTCATCGGCAACTGGGACCGCTCCTTTGGTGGGGGTGTGAATCTCTCCAGCAAGCTGGCACAGATGGCATGCCAGGGCAACTTGTGCCACAGCTTCCAGTCTTTCAACACCTGTTACACCGACACAGGCCTGTGGGGACTCTACATGGTGTGTGAGCCTGGCACCATCAACGAGATGATGCACTTCGCCCAGCTGGAATGGATGTCACTCTGCACTAGCGTTACTGAGAACGAAGTTGCAAGAGCCAAGAACCTCCTCAAGACAAACATGCTTTTGCATCTTGACGGATCCACCCCCATCTGTGAGGACATCGGCAGACAGATGCTTTGTTACAGCCGTAGGATCCCTCTGCATGAACTGGAGGCCAGAATTGATGCCATAGATGCAAAGACCATCAAGGACGTGTGTACAAAATACATCTATGACAAATCGCCTGCCATCGCAGCAGTCGGACCAATTGAGCAGCTCCCAGACTACAACCGAATTCGCAGTGGGATGTACTGGATGAGAACCTGAGAATTGGTGCTCTCTTTAGATACTTAGGAAAGTTAATAACAGCGAGCAGCCAACTGTACAATATATAAACATATCAACTTTTACAGAGTTTAAGTTGTGGTTTCTTTCAATTTTATTATAAAA

Function

symbol description
pmpcb Predicted to enable metalloendopeptidase activity. Predicted to be involved in protein processing involved in protein targeting to mitochondrion. Predicted to act upstream of or within proteolysis. Predicted to be part of mitochondrial processing peptidase complex. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in multiple mitochondrial dysfunctions syndrome 6. Orthologous to human PMPCB (peptidase, mitochondrial processing subunit beta).

NR:

description
mitochondrial-processing peptidase subunit beta-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K17732 PMPCB, MAS1; mitochondrial-processing peptidase subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945110.1 True 1647 mRNA 0.49 13 69233713 69237810

Neighbor

gene id symbol gene type direction distance location
LOC110490619 psmc2 coding downstream 6009 69223071 ~ 69227704 (-)
LOC110490615 tspan33 coding downstream 31773 69184655 ~ 69201940 (-)
smo LOC106609776 coding downstream 49213 69164155 ~ 69184500 (-)
LOC110490790 LOC106609779 coding downstream 70019 69149477 ~ 69163694 (-)
LOC110490606 LOC106609763 coding downstream 106261 69118777 ~ 69127452 (-)
LOC110490621 kcnc2 coding upstream 95410 69333220 ~ 69417065 (-)
LOC110499783 LOC106609772 coding upstream 187030 69424840 ~ 69430808 (-)
LOC110500968 LOC106609767 coding upstream 264727 69502537 ~ 69513403 (-)
LOC110511775 LOC106609789 coding upstream 276093 69513903 ~ 69526128 (-)
LOC110499763 NA coding upstream 371935 69609745 ~ 69610345 (-)
G1321730 LOC106576505 non-coding downstream 20050 69213441 ~ 69213663 (-)
G1321720 NA non-coding downstream 63204 69170162 ~ 69170509 (-)
G1321688 NA non-coding downstream 151633 69081729 ~ 69082080 (-)
G1321739 NA non-coding upstream 13425 69251235 ~ 69251458 (-)
G1321740 NA non-coding upstream 14151 69251961 ~ 69252193 (-)
G1321747 NA non-coding upstream 29782 69267592 ~ 69267847 (-)
G1321748 NA non-coding upstream 30241 69268051 ~ 69268455 (-)
G1321778 NA non-coding upstream 67658 69305468 ~ 69305834 (-)
G1321729 NA other downstream 10685 69220303 ~ 69223028 (-)
G1321652 nrf1 other downstream 160437 69031026 ~ 69073276 (-)
LOC110513021 exoc4 other downstream 1057331 67998532 ~ 68239937 (-)
LOC118938833 LOC106608919 other downstream 1435878 67785217 ~ 67797863 (-)
G1321997 NA other upstream 324500 69562310 ~ 69563040 (-)
G1322348 NA other upstream 660875 69897748 ~ 69899703 (-)
G1323036 NA other upstream 1298642 70536452 ~ 70537139 (-)
LOC110490645 LOC106576589 other upstream 1305546 70543356 ~ 70547418 (-)
G1323207 NA other upstream 1787441 71025251 ~ 71039522 (-)

Expression


Co-expression Network