LOC110499783 (LOC106609772)


Basic Information

Item Value
gene id LOC110499783
gene name LOC106609772
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69424840 ~ 69430808 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945114.1
GATCCGTCAACCAAATCCTGAAGAAGATGacgaagaagaaaaagaagaagcagCTGTTTATCCTCAGTCAGCACGGTTCATATTTACCTCAATAGTCAGCACAAGATTTACGTGGTTTTCAGCTTGAAATGGCAATGAGTCAGTTTCCCTTCTGCGTAATAGCCTAGAAACGCTAAAGATTCGGTGTTGCACGTCTGGACCAAAGGCTCCGGTTGTTTTCGTCGCTGTTCTGGTGCTTTACGGTGCAGAAGGATATGGTTTTCTCATCGTCCCAGCAAGTGGTGGTCGCATTTACGGCGGTGTTGTTTGCGTTTGTGGTGTTCCCTAGAATGTTCGGCGTAGGATCCGGAGCGAAGGAAACAAGAGGTTTTGATGCACGCTACAACAGAAAAGCGGGTCCGGGACCAGGACCGGGTGCAGTGAGAGGGCAGCCGGTCAACAAGAACACTGCTGGCTCCATGAGCAAAGCACAGACCCTGGAGAACATGCAGCAGATGAAGGTGATGATGGAGCAGGAGATGAAGGGTGACAAATACAAAACCAACAGCAACAAGGGCTACGTGTTCACGCTGATGCCGCTCTACGCCATCGGAGTCGGCCTCTTTGCAGCGTACAAATTTCTGAAGATCAAGTCTGCAGATGACTCCCAAGCCCAAAAGAACAAGGATGCCAAAGGTCCCAAGAAGtcggaggagacagAGAATCAGCTTACAGAGCTGGAGCAGCGGCTAGCGCAAACAGAGAAGATGCTCAACTCCATTCTGACCCAACTGGACCCATTGACAAGTTGTGTCAAGTCTGTGGCCCAGGAACAGAAGAACGAGATCATGTCCCAACTCCAGTCCATCCGCCACCTGATGAAGAAGAGAGGCATGGACTGTCCATCCCTTAACATTGAAGAGCCGCAGTGCGAGAGGAACCTGGATGACCTCATCGAGTCTCTGGCAGCCCACGGCGACACCTCGCCAGAGGTGGTTGCTCCTGCGGAAGACGATCAAAGTGGtgtggtgaaagaggaggagccagtccaccagcagcaccacCCTGAATCCAAGGATGAGCACTCAGTGACCGACGCTGAGGAGGAGGACATGCCCTCCTTGGAGGATTCTTGTGAGACAAACATTGAGGACATAGGCCTAGCCCAGAACATTCCAGAAGAAATGCCTACAACTGGGCTCAGACGACGCAACAGGCTGGAATGAACAGAAAAAAGGGGGTTGTTTTAAACTGTACATGAATAAAGCCATACATGTATTTTCTCATTCTTAATGGCACTACTGCAGTCTGTTCAGTAATGCTCTTGCTTTTGGCTCGCAGTTGAATAATAATTTGGTCCAAGGTTGTGTGTGATGAAGGTGATTATTTTTCTTCTGTTCCATCCCTTAAAGCATAACAGATCCCTGGCTAGGCCCATGTGTAGGGTTAGGACTTACTCCTGACAAATAAAATCCCCAGAAGCCTAACTCCATATAACATTTGACTTAGGTCTGGAGGTTTTCCTTGTCAGGCCCCAAGTATGAGGCCTGAGTTTTCCATCCTTGAACCAAACGTTAGTTAGTATGTAAGGCACCTGTAAATGTGTTTTCATCACGTGACTGCTGCTTGGAAACCCTGTACATTATCATTATATGCTGCCATCTTTTAGAAGCGGTCATTTCGGCCCTAACTATCAAGACCTCAGTGTGTTATGCAATCTTGCAACTGCCATCCGTATGTCATAGAATagtcaaaataataaaaaatgtcaaACATAGTTAACTATAAATAGCTACATTTAGTTTTTCTACTACGTACTCGAGTCTACAAGTGCAAGCTTGTGACGTTTGGCTTGTATGATTTGCTTGTTTTCAGACATCTTATGCATGTGTTTTTCTCTGCAACTGATCTTGAATGTCCTGGTGGATAAAACTGCATGAGTTCTCTTACTAGAGGGAGATGCAGGACAATCATGAATGTATTGATGACGTAGTCTAAATCAtgcctctccaaccctgttcctggagagctactgtccagtGGGTTTCTctataaccctgttcctggagtgctacTGTCCAGTGGGTTTCTCTattaccctgttcctggagagctactgtccagtGGGTTTCTctataaccctgttcctggagagctactgtccagtGGGTTTCTctataaccctgttcctggagagttacagtccAGTGGGTTTCTctataaccctgttcctggagagctactgtccacTGGGTTTCTctataaccctgttcctggagagctactgtccactgggattctctataaacctgttcctggagagctactgtccagtGGGTTTCTCTATTACCCTGTTCCCCGAGAGCTACTGTCCAGTGGGTTTCTctataaccctgttcctggagagctactgtccacTGGGTTTCTctataaccctgttcctggagagctactgtccagtGGGTTTCTctataaccctgttcctggagagctactgtccagtGGGTTTCTctataaccctgttcctggagagctactgtccagtGGGTTTCTctataaccctgttcctggagagctactgtccagtGGGTTTCTctataaccctgttcctggagaattACAGTCCAGTGGGTTtctctccaaccctaatctagcacacgtgttcctaataattagctggttgataagggGAATCCAGTTAGTTATAAGGGGTTTGTGGGAACCTACCGGAGGGTAGCTCTTCAGGAGCAGAGTTGGAGAGACCTGGTCTGAATTAATTTGTGTTAGTCTAGTTATGTAGTTCAGATTAAGCACGATGTGTGTATTTAGCCAACACAAACATGCATTCTGCTCTGTTTTATATTTGTTTCCTTTTTAAGTATTTTATGTGATCTATCGTTGACTGTAGTTAACACAGAAGTTAGCCTCTGGTTAGAACCAACCCAGTGAAACTACAGGATAGAACAGAAATCAAATTATCTCATTGGTTTTGTCTTAAATTGAACcctacctattccctatatagtaggcctctggtcaaaagtagggaatatggtgacatgatctgtgtagtaatactgTACCAGCAATCAAATAATCACGTTTGTGTAGAAATGCTGTACCACAAGACTTTTCAAAACACTGACAAATATCTTGTCTTGTGATAACTATAGCTTTGGAGCAAATGTTTAGCGAACACACAATTCATATATCTGGAAACTATAGAAACACTGCGATGTTTGTCTCCTGTTTGAGAGGTCATTTGTTCGGCTAACTCTATTTATTTTGTGTAGCTGTGCTCTTGGGCATAACTGAGGAATGTTGAAAGATGGGAGAAAATGTTCCACTCCTTACTAGAAAATAAAGGTGCTATGTGGCAA

Function

NR:

description
uncharacterized protein LOC110499783

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945114.1 True 3359 mRNA 0.45 6 69424840 69430808

Neighbor

gene id symbol gene type direction distance location
LOC110490621 kcnc2 coding downstream 7775 69333220 ~ 69417065 (-)
LOC110490620 pmpcb coding downstream 187030 69233713 ~ 69237810 (-)
LOC110490619 psmc2 coding downstream 197136 69223071 ~ 69227704 (-)
LOC110490615 tspan33 coding downstream 222900 69184655 ~ 69201940 (-)
smo LOC106609776 coding downstream 240340 69164155 ~ 69184500 (-)
LOC110500968 LOC106609767 coding upstream 71729 69502537 ~ 69513403 (-)
LOC110511775 LOC106609789 coding upstream 83095 69513903 ~ 69526128 (-)
LOC110499763 NA coding upstream 178937 69609745 ~ 69610345 (-)
LOC118936535 LOC106597692 coding upstream 180815 69611623 ~ 69614219 (-)
LOC110499760 LOC106609764 coding upstream 188160 69618968 ~ 69640830 (-)
G1321796 NA non-coding downstream 103985 69318823 ~ 69320855 (-)
G1321783 NA non-coding downstream 115398 69309113 ~ 69309442 (-)
G1321778 NA non-coding downstream 119006 69305468 ~ 69305834 (-)
G1321748 NA non-coding downstream 156385 69268051 ~ 69268455 (-)
G1321939 NA non-coding upstream 17175 69447983 ~ 69505735 (-)
G1321943 NA non-coding upstream 26937 69457745 ~ 69490115 (-)
G1321978 NA non-coding upstream 110239 69541047 ~ 69541587 (-)
G1321988 NA non-coding upstream 120331 69551139 ~ 69551535 (-)
G1321994 NA non-coding upstream 130008 69560816 ~ 69561143 (-)
G1321729 NA other downstream 201812 69220303 ~ 69223028 (-)
LOC110490790 LOC106609779 other downstream 267841 69149477 ~ 69163694 (-)
G1321652 nrf1 other downstream 351564 69031026 ~ 69073276 (-)
LOC110513021 exoc4 other downstream 1248458 67998532 ~ 68239937 (-)
LOC118938833 LOC106608919 other downstream 1627005 67785217 ~ 67797863 (-)
G1321997 NA other upstream 131502 69562310 ~ 69563040 (-)
G1322348 NA other upstream 467877 69897748 ~ 69899703 (-)
G1323036 NA other upstream 1105644 70536452 ~ 70537139 (-)
LOC110490645 LOC106576589 other upstream 1112548 70543356 ~ 70547418 (-)
G1323207 NA other upstream 1594443 71025251 ~ 71039522 (-)

Expression


Co-expression Network