LOC110511775 (LOC106609789)


Basic Information

Item Value
gene id LOC110511775
gene name LOC106609789
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69513903 ~ 69526128 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945115.1
GTGTGACGTTTCCCCTAGATACAGATATAGGATCAGATTCCCCTCCCCCCAATCCATATCTGTAACATTAGTTAAACATCATAATATATGATATTGTGCAAATAATTTGTGATCAAACCTGCACCAAGACAGTGGGCCCTATCAGATTGACCTGCACCTGTTGGTCATTATTAGTCGATGACGTCAGGTCAGTCGTTTGTTTTCGTCAACTCAATCACGCTTACCCATACCTGAGCGCAAAATAACAGCCGCAAGAAACATGTAGGCTAAACATATACTTAATTTCGTTCTTGTTTTATTCATTTAATGGTGAATTAAGGTGGCCATGATTATTGATAAAGAACACCGACTTTGCTTTTGCAGGACCTGTTTCGCGTTTCCATTTATATTGTTCATTCTTGTACCTCACACGATATCTCTCGGAAGCTGCAGTAGTTTTACTTTCTCCATATGTTGGAAAATCAGCAACAACTCCTTGTTTGGGAGTTGGCCAGAAGGACATTTATGGTTGAACACCACCAAATTGAAATCCATTTGGAGAGAGGACACATTTTCATCTTTGACAGTTGCCACTACTGTGGAACACAAATTGACACTTCATTATGGTGTCACGGTTCGGAAGTGGATATTCTCCATCTTCCCAGGTTCACATTCCATTGAGTTCAGAAGTATACATAAACCTGACCAACAGCCCATCAATAGCACTCTGGAAGCCCTGGAGTTGTTCTCCACCAATGAGGTGTTTGCGTGTGAAAACAGCACTCTGTACCTCTATCAGGACCCAAACTTCATCCTCATGCTCGGTCACACCGTGCGCTACCCTTTGAAGCTGGAGTCCAGGAGTACCTCCATGTTACTGGTGTCCTGGAAAGAGAAGATGCAGCCCCCGGCTGCCCCTGTCCCCGTCCACTCTGTGTCCCTATACCACTCTGAGATGAAGGCCTACGCTGCCCTTAGTGTGGACAGTACCCACTCCAACCACTACCGCTTCACAGCCCTGGAATCCTGCAGTTCCTATGCTGCCTGTGTGGGGGTGGCAGGCAGCCACTCGCTTACCTGTCTCTCCACTATCACAGACCCAGAAGTCCCCAGACATTTCCAGGTGACGACGTGGAACAGCAGCAGTGTCACAGTGTCCTGGGACTGTCCTGACAACCGCAAGTTCTCCTTCTTCCTTGTCACGGTCCTCTACCTCAATGGCACCAACCATGTATTGGAGGAGAGGTCATTCAGGCACACACTGGACACCTTTGTGTTCTCTCAATCTGACCTGCCGCCCTGTAGCAGGGTGAAGTTTGGCCTGCAGACGGTGTGCCAGGCAGGCACGGAGGCTCGCCACAGCAGAATGGTCCTCATCAAAGGGAATACTGTCCACTCAGAAATTGAGAACCTGTGGCAGACCTCCTCGGGGCCGGACAACTACACCCTGAGCTGGGTGGTGAGGAACACTTCTTCTATCTCCATGTTCAGGATCTACCACCAGGGGGTGCTCCACTACACCACCCTGCTCACCAGCCACACGGTGGCCAGCCTTCTGCCGTGCAGCCAGTACTTGGCTAGAGTAGAGGCGCTGTGTGGAGACAGCGTGGTCATGAGCTCCAAGACCGTACTCGCTCGCACAGGACCCAGAGGTGTTTCAGAACTGCGCTACCGTCCTGAGGACTCTACAGCGCTGTGGATTGGTGGGACCGGACAGGGCCTGGCCTTTCAGTACCAGCTGTCTTATGACAATGGCTCGACCATCCAGCAAGGCCGGCTGATGGAGCCTTTGCTCCCCCTCCTGGGGCTCATTGAGGGTGCGCGCTATGCCCTGGACGTGTGGGAAGAGTGTGACGGCGAGTGGAGCGCTGACCCGGCCCTGGTGTGTTTCGATGGAGTCAACGTTTCCGTCAACGCCCTCGTGCTGCCGGTGGCGTCCACCCTGAGGCCGAATGAAGACAAAGTTCTAGCCTTTATTGTGCCTTGGTTAATGGTGTTGGACCCAAAGACTGAGCCCTGGGCTGAGCTGAAGCGCATCTACGAAAAACTACTGGAGGAGCTTTTGAAAGAGTACCCAATTAAGACCCGGGTGGAGTTGGTTGCGTTCAAGGAGCTGGAAGGCGAATCCAAAACTAAGATTACCTTTCAAGGCTTTGACGCTTCCATAACCGACGTAGACTTACCGCTACCACCTGGCGAGCAGCTGGACCATATCCAGTCCCTCCAGCCGCCCAATATCACAGTCAAGGACGGGATCATCTACTGGGATGACCCAGATGAGTGTGCGACGCCTGACCTGAACAGGTGTGATGCCAACTCTTTGTGCGTCAACACTCTGAACTCCTATACCTGTGTGTGTCAACATGGCTTCTATGACGTCGGGCCCGCCTTCGTTCCCCCTCCTACCCCTGCCtcacatcctgtctgttatgAAAAAGGGATGTTCACCCAGTGCCTGACGAGATCGATGGCCGGAGGTATCGCCAAAGCCTTCCTGATTGGCTACTTTGGTGGTGACGTGACGGTTGTCTTGAATGAAGGCCGTTGTACCATGGAGGAGAGCGAGACACTCTACCACTTCCACGTGTTGCGTAAACCCTCGCAGTGTGGAACGATACGGCTGgtgaacAGAACACACATCGAGTTCCGGAATACTCTGACAGTGACCTTGAGCAGAGAGAGGACCATCACACGAAGAGATCTCAAGGTTATCTGGAAGTGCATCTACCCCCGGAACTATGTCCGCAACACCCAGATAAACGTAGATCTGGAGTGgATCACCTCCCACTCTGTGGTGGAGTACAACTCCTCCCATCAGCTGGGGCTGGCCATGACCATGTACAGCGACAACTCCTTCTCCTACGGCTACAGAGACTCCATCGCCCTCCACCTCAGCGACGTACTCTTCTTCGAGGTGGCCCTCCTGACAAACAACACGTTCGCCTCGGAGGTCCTGCTAGAAGTGATTTCCTGCTGGGCCACAGAGAGCCCGGATCCACAAGACGAAACCAAGGGCTTCTTTCTCCTAGATGGCTGCCCTGTTGACAGCACCTTTCATTGGCTGTCTGTGAACGGTGTGTCACAGAGGAGCAGATTCTCCATTCACATGTTCACTATGCCCAAGGAGTTACCCATCTACATGCACTGCCTGGCCCGGATATGCAGTCACGATGAGGACTGTACTACGAACTGTACCACCCACAGACTTTCAAAGAGATCAACAGCTAGATGGGATCCATACATCAATGTAGCTGTGGTCGTGTCTGCAGGACCACTGATGGTCACCCCCGAGGCGGCACCAGGGACCAAACTCTCCAACTGGGATGAGGCTTTGACAATGATCTACGTCGTGGGAGGAACCATGGGTGTCTTGATGTTGACGATGCTTGGTGTGAGCGCAACAAAGGCTATAATGAATTATTATGAGAGAGCAAGGCCTCAATAAAAACATGGaaccaca
>XM_036945116.1
CTCATTCTTGGGTGGTCACAATATTGCTCTGTGTGACGTTTCCCCTAGATACAGATATAGGATCAGATTCCCCTCCCCCCAATCCATATCTGTAACATTAGTTAAACATCATAATATATGATATTGTGCAAATAATTTGTGATCAAACCTGCACCAAGACAGTGGGCCCTATCAGATTGACCTGCACCTGTTGGTCATTATTAGTCGATGACGTCAGGTCAGTCGTTTGTTTTCGTCAACTCAATCACGCTTACCCATACCTGAGCGCAAAATAACAGCCGCAAGAAACATGACCTGTTTCGCGTTTCCATTTATATTGTTCATTCTTGTACCTCACACGATATCTCTCGGAAGCTGCAGTAGTTTTACTTTCTCCATATGTTGGAAAATCAGCAACAACTCCTTGTTTGGGAGTTGGCCAGAAGGACATTTATGGTTGAACACCACCAAATTGAAATCCATTTGGAGAGAGGACACATTTTCATCTTTGACAGTTGCCACTACTGTGGAACACAAATTGACACTTCATTATGGTGTCACGGTTCGGAAGTGGATATTCTCCATCTTCCCAGGTTCACATTCCATTGAGTTCAGAAGTATACATAAACCTGACCAACAGCCCATCAATAGCACTCTGGAAGCCCTGGAGTTGTTCTCCACCAATGAGGTGTTTGCGTGTGAAAACAGCACTCTGTACCTCTATCAGGACCCAAACTTCATCCTCATGCTCGGTCACACCGTGCGCTACCCTTTGAAGCTGGAGTCCAGGAGTACCTCCATGTTACTGGTGTCCTGGAAAGAGAAGATGCAGCCCCCGGCTGCCCCTGTCCCCGTCCACTCTGTGTCCCTATACCACTCTGAGATGAAGGCCTACGCTGCCCTTAGTGTGGACAGTACCCACTCCAACCACTACCGCTTCACAGCCCTGGAATCCTGCAGTTCCTATGCTGCCTGTGTGGGGGTGGCAGGCAGCCACTCGCTTACCTGTCTCTCCACTATCACAGACCCAGAAGTCCCCAGACATTTCCAGGTGACGACGTGGAACAGCAGCAGTGTCACAGTGTCCTGGGACTGTCCTGACAACCGCAAGTTCTCCTTCTTCCTTGTCACGGTCCTCTACCTCAATGGCACCAACCATGTATTGGAGGAGAGGTCATTCAGGCACACACTGGACACCTTTGTGTTCTCTCAATCTGACCTGCCGCCCTGTAGCAGGGTGAAGTTTGGCCTGCAGACGGTGTGCCAGGCAGGCACGGAGGCTCGCCACAGCAGAATGGTCCTCATCAAAGGGAATACTGTCCACTCAGAAATTGAGAACCTGTGGCAGACCTCCTCGGGGCCGGACAACTACACCCTGAGCTGGGTGGTGAGGAACACTTCTTCTATCTCCATGTTCAGGATCTACCACCAGGGGGTGCTCCACTACACCACCCTGCTCACCAGCCACACGGTGGCCAGCCTTCTGCCGTGCAGCCAGTACTTGGCTAGAGTAGAGGCGCTGTGTGGAGACAGCGTGGTCATGAGCTCCAAGACCGTACTCGCTCGCACAGGACCCAGAGGTGTTTCAGAACTGCGCTACCGTCCTGAGGACTCTACAGCGCTGTGGATTGGTGGGACCGGACAGGGCCTGGCCTTTCAGTACCAGCTGTCTTATGACAATGGCTCGACCATCCAGCAAGGCCGGCTGATGGAGCCTTTGCTCCCCCTCCTGGGGCTCATTGAGGGTGCGCGCTATGCCCTGGACGTGTGGGAAGAGTGTGACGGCGAGTGGAGCGCTGACCCGGCCCTGGTGTGTTTCGATGGAGTCAACGTTTCCGTCAACGCCCTCGTGCTGCCGGTGGCGTCCACCCTGAGGCCGAATGAAGACAAAGTTCTAGCCTTTATTGTGCCTTGGTTAATGGTGTTGGACCCAAAGACTGAGCCCTGGGCTGAGCTGAAGCGCATCTACGAAAAACTACTGGAGGAGCTTTTGAAAGAGTACCCAATTAAGACCCGGGTGGAGTTGGTTGCGTTCAAGGAGCTGGAAGGCGAATCCAAAACTAAGATTACCTTTCAAGGCTTTGACGCTTCCATAACCGACGTAGACTTACCGCTACCACCTGGCGAGCAGCTGGACCATATCCAGTCCCTCCAGCCGCCCAATATCACAGTCAAGGACGGGATCATCTACTGGGATGACCCAGATGAGTGTGCGACGCCTGACCTGAACAGGTGTGATGCCAACTCTTTGTGCGTCAACACTCTGAACTCCTATACCTGTGTGTGTCAACATGGCTTCTATGACGTCGGGCCCGCCTTCGTTCCCCCTCCTACCCCTGCCtcacatcctgtctgttatgAAAAAGGGATGTTCACCCAGTGCCTGACGAGATCGATGGCCGGAGGTATCGCCAAAGCCTTCCTGATTGGCTACTTTGGTGGTGACGTGACGGTTGTCTTGAATGAAGGCCGTTGTACCATGGAGGAGAGCGAGACACTCTACCACTTCCACGTGTTGCGTAAACCCTCGCAGTGTGGAACGATACGGCTGgtgaacAGAACACACATCGAGTTCCGGAATACTCTGACAGTGACCTTGAGCAGAGAGAGGACCATCACACGAAGAGATCTCAAGGTTATCTGGAAGTGCATCTACCCCCGGAACTATGTCCGCAACACCCAGATAAACGTAGATCTGGAGTGgATCACCTCCCACTCTGTGGTGGAGTACAACTCCTCCCATCAGCTGGGGCTGGCCATGACCATGTACAGCGACAACTCCTTCTCCTACGGCTACAGAGACTCCATCGCCCTCCACCTCAGCGACGTACTCTTCTTCGAGGTGGCCCTCCTGACAAACAACACGTTCGCCTCGGAGGTCCTGCTAGAAGTGATTTCCTGCTGGGCCACAGAGAGCCCGGATCCACAAGACGAAACCAAGGGCTTCTTTCTCCTAGATGGCTGCCCTGTTGACAGCACCTTTCATTGGCTGTCTGTGAACGGTGTGTCACAGAGGAGCAGATTCTCCATTCACATGTTCACTATGCCCAAGGAGTTACCCATCTACATGCACTGCCTGGCCCGGATATGCAGTCACGATGAGGACTGTACTACGAACTGTACCACCCACAGACTTTCAAAGAGATCAACAGCTAGATGGGATCCATACATCAATGTAGCTGTGGTCGTGTCTGCAGGACCACTGATGGTCACCCCCGAGGCGGCACCAGGGACCAAACTCTCCAACTGGGATGAGGCTTTGACAATGATCTACGTCGTGGGAGGAACCATGGGTGTCTTGATGTTGACGATGCTTGGTGTGAGCGCAACAAAGGCTATAATGAATTATTATGAGAGAGCAAGGCCTCAATAAAAACATGGaaccaca

Function

NR:

description
PREDICTED: uncharacterized protein LOC106609789

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945115.1 False 3439 mRNA 0.52 18 69513903 69526098
XM_036945116.1 True 3367 mRNA 0.52 19 69513903 69526128

Neighbor

gene id symbol gene type direction distance location
LOC110500968 LOC106609767 coding downstream 500 69502537 ~ 69513403 (-)
LOC110499783 LOC106609772 coding downstream 83095 69424840 ~ 69430808 (-)
LOC110490621 kcnc2 coding downstream 96838 69333220 ~ 69417065 (-)
LOC110490620 pmpcb coding downstream 276093 69233713 ~ 69237810 (-)
LOC110490619 psmc2 coding downstream 286199 69223071 ~ 69227704 (-)
LOC110499763 NA coding upstream 83617 69609745 ~ 69610345 (-)
LOC118936535 LOC106597692 coding upstream 85495 69611623 ~ 69614219 (-)
LOC110499760 LOC106609764 coding upstream 92840 69618968 ~ 69640830 (-)
LOC118938967 NA coding upstream 98872 69625000 ~ 69625129 (-)
LOC118938965 NA coding upstream 103530 69629658 ~ 69629794 (-)
G1321939 NA non-coding downstream 8168 69447983 ~ 69505735 (-)
G1321943 NA non-coding downstream 23788 69457745 ~ 69490115 (-)
G1321796 NA non-coding downstream 193048 69318823 ~ 69320855 (-)
G1321783 NA non-coding downstream 204461 69309113 ~ 69309442 (-)
G1321978 NA non-coding upstream 14919 69541047 ~ 69541587 (-)
G1321988 NA non-coding upstream 25011 69551139 ~ 69551535 (-)
G1321994 NA non-coding upstream 34688 69560816 ~ 69561143 (-)
G1321995 NA non-coding upstream 35526 69561654 ~ 69562017 (-)
G1322201 NA non-coding upstream 38229 69564357 ~ 69564706 (-)
G1321729 NA other downstream 290875 69220303 ~ 69223028 (-)
LOC110490790 LOC106609779 other downstream 356904 69149477 ~ 69163694 (-)
G1321652 nrf1 other downstream 440627 69031026 ~ 69073276 (-)
LOC110513021 exoc4 other downstream 1337521 67998532 ~ 68239937 (-)
LOC118938833 LOC106608919 other downstream 1716068 67785217 ~ 67797863 (-)
G1321997 NA other upstream 36182 69562310 ~ 69563040 (-)
G1322348 NA other upstream 372557 69897748 ~ 69899703 (-)
G1323036 NA other upstream 1010324 70536452 ~ 70537139 (-)
LOC110490645 LOC106576589 other upstream 1017228 70543356 ~ 70547418 (-)
G1323207 NA other upstream 1499123 71025251 ~ 71039522 (-)

Expression


Co-expression Network