LOC110499751 (csrp2)


Basic Information

Item Value
gene id LOC110499751
gene name csrp2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 69881224 ~ 69891087 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945144.1
GAATCCATATTGGTGGCACGAGGAGAGCTTATTTACGTGAAACAGTTGGATTCTCCAGATAGATTGGGTCGACGACAAGTCGCTCAGCACAAACATGCCAAACTGGGGAGGAGGTAACAAGTGTGGTGCATGCCAGGGGACAGTGTACCATGCCGAGGAGGTGCAGTGTGATGGGAAGAGCTTCCACAAATGCTGCTTCCTGTGCATGGTCTGCAGAAAGGGTTTAGACAGCAACAATGTGGCCATCCACGACACTGAGATCTACTGCAAGTCCTGCTATGGAAAGAAGTACGGCCCCAAGGGCTACGGCTACGGCCAGGGAGCTGGGACACTCAGCATGGACcgtggagagagactggggatcaAACCAGAGGAGACCCAGTGTCACAGACCCACCACCAACCCCAACCCCTCCAAATTCGCCCAGAAGTTCGGGGACTCGGATAAGTGTGGCCGGTGTGGGGAGTCAGTGTACGCTGCGGAGAAGATCGTGGGGGCAGGcaagCCATGGCATAAGAACTGCTTCCGCTGTGCCAAGTGTGGGAAGAGCCTGGAGTCTACCACCCAGACAGAGAAAGATGGCGAGATCTACTGCAAAGCATGTTACGCAAAGAACTTTGGACCCAAAGGATTTGGTTATGGCCAGGGAGCTGGCGCTCTGGTGCATGCCTAATGATGATCACCCTCAAGACAAGGCATTTCTGACTGTGAAAACCGCTGTGCTACGTTGTTTTTTTAAAGGCTGGCGGAGGGCCATAATAGGGAGGATTTACCATTTACAAATATACAATAAATAAAAAGCTTTACCTAAAACAA
>XM_036945142.1
ttattgctattataaactggttagcaACGTAATTAttgcagtaaaaatacatgttttttcatacccgtggtatacttCAGAGCTGTAATTTCTGCAGGCTATTACTGGGACACTATGCAACGCACCACCTCTAACCCTTATGGTTTCCTGCATGCATTCTAATTCAAACAGATATCTGGCTTAACTCAGACAGGTCTAATCACAGAGTAGTTTGGTGAGTCCGCAAAGGACACGACGTCGAAACGCTGCGATCAAATTGAAGGATTCTCCCACAACAAATACAGCACAAACATGCCAAACTGGGGAGGAGGTAACAAGTGTGGTGCATGCCAGGGGACAGTGTACCATGCCGAGGAGGTGCAGTGTGATGGGAAGAGCTTCCACAAATGCTGCTTCCTGTGCATGGTCTGCAGAAAGGGTTTAGACAGCAACAATGTGGCCATCCACGACACTGAGATCTACTGCAAGTCCTGCTATGGAAAGAAGTACGGCCCCAAGGGCTACGGCTACGGCCAGGGAGCTGGGACACTCAGCATGGACcgtggagagagactggggatcaAACCAGAGGAGACCCAGTGTCACAGACCCACCACCAACCCCAACCCCTCCAAATTCGCCCAGAAGTTCGGGGACTCGGATAAGTGTGGCCGGTGTGGGGAGTCAGTGTACGCTGCGGAGAAGATCGTGGGGGCAGGcaagCCATGGCATAAGAACTGCTTCCGCTGTGCCAAGTGTGGGAAGAGCCTGGAGTCTACCACCCAGACAGAGAAAGATGGCGAGATCTACTGCAAAGCATGTTACGCAAAGAACTTTGGACCCAAAGGATTTGGTTATGGCCAGGGAGCTGGCGCTCTGGTGCATGCCTAATGATGATCACCCTCAAGACAAGGCATTTCTGACTGTGAAAACCGCTGTGCTACGTTGTTTTTTTAAAGGCTGGCGGAGGGCCATAATAGGGAGGATTTACCATTTACAAATATACAATAAATAAAAAGCTTTACCTAAAACAA
>XM_036945143.1
tcgaggtgccttattgctattataaactgAGTAGTTTGGTGAGTCCGCAAAGGACACGACGTCGAAACGCTGCGATCAAATTGAAGGATTCTCCCACAACAAATACAGCACAAACATGCCAAACTGGGGAGGAGGTAACAAGTGTGGTGCATGCCAGGGGACAGTGTACCATGCCGAGGAGGTGCAGTGTGATGGGAAGAGCTTCCACAAATGCTGCTTCCTGTGCATGGTCTGCAGAAAGGGTTTAGACAGCAACAATGTGGCCATCCACGACACTGAGATCTACTGCAAGTCCTGCTATGGAAAGAAGTACGGCCCCAAGGGCTACGGCTACGGCCAGGGAGCTGGGACACTCAGCATGGACcgtggagagagactggggatcaAACCAGAGGAGACCCAGTGTCACAGACCCACCACCAACCCCAACCCCTCCAAATTCGCCCAGAAGTTCGGGGACTCGGATAAGTGTGGCCGGTGTGGGGAGTCAGTGTACGCTGCGGAGAAGATCGTGGGGGCAGGcaagCCATGGCATAAGAACTGCTTCCGCTGTGCCAAGTGTGGGAAGAGCCTGGAGTCTACCACCCAGACAGAGAAAGATGGCGAGATCTACTGCAAAGCATGTTACGCAAAGAACTTTGGACCCAAAGGATTTGGTTATGGCCAGGGAGCTGGCGCTCTGGTGCATGCCTAATGATGATCACCCTCAAGACAAGGCATTTCTGACTGTGAAAACCGCTGTGCTACGTTGTTTTTTTAAAGGCTGGCGGAGGGCCATAATAGGGAGGATTTACCATTTACAAATATACAATAAATAAAAAGCTTTACCTAAAACAA
>XM_036945145.1
ctattataaactggttagcaACGTAATTAttgcagtaaaaatacatgttttttcatacccgtggtatacttCAGAGCTGTAATTTCTGCAGGCTATTACTGGGACACTATGCAACGCACCACCTCTAACCCTTATGGTTTCCTGCATGCATTCTAATTCAAACAGATATCTGGCTTAACTCAGACAGGTCTAATCACAGGTATTCTTTCATGCTATATTTCTGACATGTTGGGTTAAAAGCAATGAATGAGTAAAACAGTACAACTCTCCTCCACTGCCTGGCTAAACCACTCCCCTCTCTAAAACAACCGTGAACAGAGTAGTTTGGTGAGTCCGCAAAGGACACGACGTCGAAACGCTGCGATCAAATTGAAGGATTCTCCCACAACAAATACAGCACAAACATGCCAAACTGGGGAGGAGGTAACAAGTGTGGTGCATGCCAGGGGACAGTGTACCATGCCGAGGAGGTGCAGTGTGATGGGAAGAGCTTCCACAAATGCTGCTTCCTGTGCATGGTCTGCAGAAAGGGTTTAGACAGCAACAATGTGGCCATCCACGACACTGAGATCTACTGCAAGTCCTGCTATGGAAAGAAGTACGGCCCCAAGGGCTACGGCTACGGCCAGGGAGCTGGGACACTCAGCATGGACcgtggagagagactggggatcaAACCAGAGGACCATGGCATAAGAACTGCTTCCGCTGTGCCAAGTGTGGGAAGAGCCTGGAGTCTACCACCCAGACAGAGAAAGATGGCGAGATCTACTGCAAAGCATGTTACGCAAAGAACTTTGGACCCAAAGGATTTGGTTATGGCCAGGGAGCTGGCGCTCTGGTGCATGCCTAATGATGATCACCCTCAAGACAAGGCATTTCTGACTGTGAAAACCGCTGTGCTACGTTGTTTTTTTAAAGGCTGGCGGAGGGCCATAATAGGGAGGATTTACCATTTACAAATATACAATAAATAAAAAGCTTTACCTAAAA

Function

symbol description
csrp2 Predicted to enable actinin binding activity. Predicted to be a structural constituent of muscle. Predicted to be involved in muscle tissue development and sarcomere organization. Predicted to be active in Z disc and nucleus. Orthologous to human CSRP2 (cysteine and glycine rich protein 2).

NR:

description
hypothetical protein cypCar_00030413

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0007254 JNK cascade biological_process
GO:0003007 heart morphogenesis biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09377 CSRP; cysteine and glycine-rich protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945144.1 False 816 mRNA 0.52 6 69881224 69890642
XM_036945142.1 False 1013 mRNA 0.49 7 69881224 69891077
XM_036945143.1 False 837 mRNA 0.51 7 69881224 69891087
XM_036945145.1 True 993 mRNA 0.47 5 69881227 69891071

Neighbor

gene id symbol gene type direction distance location
LOC110500965 osbpl8 coding downstream 51457 69678178 ~ 69829767 (-)
LOC110499760 LOC106609764 coding downstream 240394 69618968 ~ 69640830 (-)
LOC118938965 NA coding downstream 251430 69629658 ~ 69629794 (-)
LOC118938967 NA coding downstream 256095 69625000 ~ 69625129 (-)
LOC118936535 LOC106597692 coding downstream 267005 69611623 ~ 69614219 (-)
LOC110499754 LOC106609744 coding upstream 14334 69905421 ~ 69927631 (-)
LOC110490659 NA coding upstream 502174 70393261 ~ 70394050 (-)
LOC110490652 ctrb coding upstream 504644 70395731 ~ 70397315 (-)
LOC110490645 LOC106576589 coding upstream 652289 70543356 ~ 70547418 (-)
si:dkey-14k9.3 LOC106609712 coding upstream 659501 70550588 ~ 70558751 (-)
G1322338 NA non-coding downstream 135 69880641 ~ 69881089 (-)
G1322340 NA non-coding downstream 666 69879515 ~ 69880558 (-)
G1322334 NA non-coding downstream 5332 69872028 ~ 69875892 (-)
G1322292 NA non-coding downstream 76129 69804491 ~ 69805095 (-)
G1322290 NA non-coding downstream 81720 69798289 ~ 69799504 (-)
G1322348 NA non-coding upstream 6661 69897748 ~ 69899703 (-)
G1322337 LOC106598243 non-coding upstream 54554 69945641 ~ 69990817 (-)
G1322341 LOC106576605 non-coding upstream 85619 69976706 ~ 70001692 (-)
G1322380 NA non-coding upstream 111421 70002508 ~ 70002730 (-)
G1322381 NA non-coding upstream 112627 70003714 ~ 70003946 (-)
G1321997 NA other downstream 318184 69562310 ~ 69563040 (-)
G1321729 NA other downstream 658196 69220303 ~ 69223028 (-)
LOC110490790 LOC106609779 other downstream 724225 69149477 ~ 69163694 (-)
G1321652 nrf1 other downstream 807948 69031026 ~ 69073276 (-)
LOC110513021 exoc4 other downstream 1704842 67998532 ~ 68239937 (-)
G1323036 NA other upstream 645365 70536452 ~ 70537139 (-)
G1323207 NA other upstream 1134164 71025251 ~ 71039522 (-)
G1323296 LOC106609674 other upstream 1311413 71202500 ~ 71237846 (-)

Expression


Co-expression Network