XLOC_031646 (wasf3a)


Basic Information

Item Value
gene id XLOC_031646
gene name wasf3a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 68007172 ~ 68022631 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061290
ATGCCACTGGTGAAGAGGAACATCGAGCCCAAACACCTGAGCAGAGGAGCTCTACCTGAGAGCATCAGCAATGAGCTGGAGTGCGTGACCAACAACACCCTCTCGGCCATCATACGCCAGCTCAGCAGCCTCAGTAAACATGCAGAAGACGTGTTTGGTGAGCTCTTCAATGAAGCCAACACATTCTACCTGCGTGCAAACTCTCTGCAGGACCGTATTGACCGTCTCGCAGTCAAGGTCACTCAGCTGGACTCTAGCGTGGAAGAAGTTTCACTGCAGGATATTAATATGCGTAAAGCATTTAAGAGCTCCACTGTTCAAGACCAGCAGGTGGTGACAAAGAGCAGCGTTCCAAACCCCATCACAGAGATGTACAACACCAGCGACAAACCACCACCACTCAACATACTGTCAgcttacagGGATGATCACATTGACGGAATTAAGTTCTACACAGACCCCTCCTATTTCTTTGACTTGTGGAAGGAGAAAATGCTTCAAGACACTGAAGACAAGAGAAAAGAGAAGAGGAAGCATAGGGAGCAGAAGCGCTGTGTTGACGGTACGCTGCCTCGTGAGGTGAAGAAGGTTCGTAAGGCTCATAACCGCAGACAGGAATGGAACATGATGGCTTTTGATAAGGAGCTGCGGCCTGAGCATCGTGCATCATCTGAGGGCTCGCTGTCTCCAGAGGGCAGGTTCGTCATCTCACCGTCTGCAGATCCAGACCTCACTACATCAAATACCTGGTTTTCCTCTATACCAATAGAAACATATGCTGTTGACCAGTGTGTGTATGCTGGAGCATGTACAGTCTGCTTGAgaaggtttttttctctctcttacaGTATGATGGAGTATTATGCCAGTTCaggtcctcctcctcctcctccaccaccaATGGCTCCTCTTATTCCCTCCGCACAGACAGCATTTGCTTCTCCTCCTGCTACCCCTCATGCTGGCCCAGTCTCCTCAGCTTTACGCTATCCTCTTCCACCCGTCCCGCCTGCTTTATCATCTCCTACTGAAGGTCCAGCTCCTCCTCCAGCACCTCCTGTTCCTCCTCATCCCGAGGGACGGAGGCTGAATCTGCAGGCCGGCGCAGGCGCTCGCAGTGACCTGCTGTCAGCGATACGCATGGgcatTCAACTAAAGAAAGTACAGGAGCAACAAGAGCAGCAGGCTAAAAGAGAGCCCGTGGGCAACGATGTGGCCACTATTCTCTCCCGCCGCATCGCCGTCGAGTACAGCGACTCAGAAGACGACTCAGAGCTGGATGACAACGAATGGTCAGACTGA

Function

symbol description
wasf3a Predicted to enable Arp2/3 complex binding activity and protein kinase A regulatory subunit binding activity. Predicted to be involved in actin cytoskeleton organization and positive regulation of Arp2/3 complex-mediated actin nucleation. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of SCAR complex. Predicted to be active in lamellipodium. Orthologous to human WASF3 (WASP family member 3).

GO:

id name namespace
GO:2000601 positive regulation of Arp2/3 complex-mediated actin nucleation biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0030027 lamellipodium cellular_component
GO:0031209 SCAR complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0034237 protein kinase A regulatory subunit binding molecular_function
GO:0071933 Arp2/3 complex binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060531-55 Predicted to enable Arp2/3 complex binding activity and protein kinase A regulatory subunit binding activity. Predicted to be involved in actin cytoskeleton organization and positive regulation of Arp2/3 complex-mediated actin nucleation. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be part of SCAR complex. Predicted to be active in lamellipodium. Orthologous to human WASF3 (WASP family member 3).

Ensembl:

ensembl_id ENSDARG00000059466

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061290 True 1302 mRNA 0.52 8 68007172 68022631

Neighbor

gene id symbol gene type direction distance location
XLOC_031645 gtf3aa coding downstream 14086 67980187 ~ 67993086 (-)
XLOC_031644 NA coding downstream 34830 67964507 ~ 67972342 (-)
XLOC_031643 gsx1 coding downstream 96061 67909644 ~ 67911111 (-)
XLOC_031642 abhd10a coding downstream 111317 67884087 ~ 67895855 (-)
XLOC_031641 tagln3a coding downstream 129108 67869785 ~ 67878064 (-)
XLOC_031647 rnf167 coding upstream 14998 68037629 ~ 68058168 (-)
XLOC_031648 spag7 coding upstream 37293 68059924 ~ 68074592 (-)
XLOC_031649 slc25a11 coding upstream 54282 68076913 ~ 68093169 (-)
XLOC_031650 CABZ01083943.1 coding upstream 183321 68205952 ~ 68214334 (-)
XLOC_031651 KIF1C coding upstream 205637 68228268 ~ 68259747 (-)
XLOC_031627 BX897741.1 non-coding downstream 842753 67161442 ~ 67164419 (-)
XLOC_031620 CU929288.1 non-coding downstream 1469838 66537217 ~ 66537334 (-)
XLOC_031616 NA non-coding downstream 1763040 66239915 ~ 66244132 (-)
XLOC_031612 NA non-coding downstream 1982228 66022664 ~ 66024944 (-)
XLOC_031655 LO017735.1 non-coding upstream 595327 68617958 ~ 68618089 (-)
XLOC_031656 NA non-coding upstream 599467 68622098 ~ 68668542 (-)
XLOC_031659 NA non-coding upstream 791292 68813923 ~ 68816110 (-)
XLOC_031662 NA non-coding upstream 867846 68890477 ~ 68893011 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000059_06621058_06632392 WASF3 coding CI01000059 null 6619898 ~ 6632909 (-)