LOC110490656 (LOC106576586)


Basic Information

Item Value
gene id LOC110490656
gene name LOC106576586
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70528555 ~ 70538962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945184.1
CGCCTGTAAACTTTACAACTGACTTAACAAAACAAGGTTCTACAAAATCCCTTTCTCTTTTATGATTCTGTCAAAACATAATGTCGCTAGCTATTCATGGGTTGCACAGATGCCGCATCATATTGATGTCCAACTGATGCTCAGTCTTTCTGAACTGGGGCTaatgacattgctaaagtagaCAACCTTTGTAGAAAACTAAATTGGCATCATTACGATGTCAAGTTTACTTGAGAAATGGCAGTGTTGGCATCCTGAGCTAGCAAAGTTCGACAGAAAAAGCTAGCAATGCTAACGTTAAGCTAACTAAAATGTCGATGCCCAgtcgtagctagctagcttaagtTATACTGCATATAAAGTAAATCTGGCGACATTACAATGATGACAAAAGCTTGTCCTACTAATTATTTTCCTCCTTTTTAAAATGTCATTGTGTTTCCAAGCCACGGTAATGCACTTCATACAATATCTTCATCAACACCAAGAACACATTAAATAGAATGCTCAGCTGGGCATCAGTCGAATCAAAGGAATGTTCAAAACAATATCTTCATTACGAAACGTGCAGCCCAGGAATACAATGAAACCACCTGTTATGACGCGACATTTGCCTGGTTAACtgtgttccatttgttttgaatCTAAGCAACTGCAACAATGccgaagagaggaagaaagAAGAAGAGGTCAACCCCTGTAACCATCGAGAACGCCAGGAACAATGAGACGACACATGACTCGATACGCCGTTACGCAGGAAAAATTGTGGACTACATTGCCCAGTCAACCACTGCTTTCTCTCAGGAAGATGTTTCCGGTATAGGCCTACATAACATCTTGGGGAAGACTGTAGAGGGCCTTCTCCAAAAAGTGTGCGGAGGGGTCTCAAGCATCCTGAACAAGTATTTGTATGGGGCGGGGGTGTTGTCTGATGCGGTGATCCCAGTAAATCTCTTGCCTGTAGCTTCAAATGGAGACAATCGGAAAATGGAAAAAAGATGGCAGGACTGCACTGAGGAAGACTGTGAACTGATAATTATCCGACTGACGGGGACTGTAATTATCACCATGTTGGATAGTGTTATGGAGAGTTGCAGGACGGACCCCACACACAGTTCATTCTTAGAAGAACTGGGGCTCACCATGGAAATGGTAAAGGTCATACGTGAAGTAGCAGAATGTGCAGCGAACGCCACAAGTAATGATTTCAGTCAGTTCACAGTTGGAGGAGTTCCTCTCTTTCAGAGACCACTGAGCAATCTCTCCTCTGGGCCGAGTCAACCAGCACCCCCCCAAAATGCCTTGCCAACATCCACTGTTCCCACACCTGTCTCAAAGGGGAGCTCAGACAGTCCCAGATCCACTGACTCAGGGTCCTCACAAGTCAGGAAGCCAAGACAATCAACAGAAGGAGTTCAGAGACTCTCCGAAAGGCAGCAGAATCCAGGGGAGGAGATCACGTCTCTAGTGATTGAAACCATTCTACGGTCAGTTGCGGATTTAGCCAGGCATGGACTTCTGCCAAGCTGCACCCAGTAGACTGGATGCCCCCTTTTTATGGAGGTGATGCAGAAAACAAACATGTGAAGCCAATTCATAAAAGCATTAATTAAACAAATATGTTGTTAAAAGCTGGCAGAGAAAGCCATTAGGGAAGCTGTGCACACAGTTCTGACAGATGGACGCCATGGGGAGTTTTCAAGCCTAAGAATAATGGAGCTGAAATGCATTGATATGTCGAAGACACCTAAAGCCCAATCAACCTTGGAGTCCATTCAGCTGCCCAAAGACAGTGATGACAGCTTGAAATCAGGATCCTGTGAAGACTCCCTGATTGCTGAACCTCATGCTGACCAAGTTGACACCATCAAGGCATCTATGAACACTGAAATCCACTCAGTGGTTACTAAGGCCACAGTGGTCTATGCTAACCAACCTGAGGCACTGTCCAGTGAAGTGCTTCTGGGCACTGAAGGTAATGGATATGTTGCTGACCATGCTGTGGTGGGTTCTCTGACTCCAGACTGTGACCTGGCATTGGTAGAAGGGCTGGACCCTGGGTGGCACACTGCCCTGGTACTGATGGAGACCTTAGTGAATCCTGGCAATGACTCTGACCTGACTCTGTCTGACTCCAGTGAAGTGTCACTGATCACTGACGACCTGCCAGTGGTGGACTCAGCTGTTGACTCCAGAGGGCAGCAGAGGGCAGAGGATGACTTGCAAAGCACTGACCAGCTGCTAACGAGGTCCTGTGCAGACTGTGTGACCACAGAGAAGCACTATACTGTACCGTTTGAGGACTCTTTGAACTCTGACAAGGAAATCTCCCTCAACATTAAAGACCATGATGACCGACCTGCAGTAGACTTTCGCAGAGATTCTGTGAGCTCGTCTGACCAGTCTTTGTCCCTTGTTGCCACTGCTCTTGGATCAATAGTCACTATTGACTCTTTCAATAAGGCTCTGTTGTTTTCCAATATGTTGGACCAAGGCAAAGATAACCCTATTGACCAGCCTGTAGTGAAGTctcagaccactgaaaatctaaTTAACCCCACTTTGGTGTCAGAGTCCATTCAACCTCTCGTCAATGAAATCCTGGAAGATAACATTATCTCAGCCCCTGATGACAGAACTGTgttcactacagaccctgtagGATCACATGAGATTGTAATATTTATATCTAGAATGCACTTAGGCAGTGTCATCACCTGTCATGATGACCAGTTTTTGGAGTCAGACCGTGAGGATGACATGGTTGACCCTTTGTCTCACACCAGTCATAGCCATCATCTGTGCGAGTCAGTCATGAGGCCCAAAGGTCAAGTCCAACTCAGTGGACATACTTGGTCACCCTCTTATGAGACTGATGACTGCCGTCGCTATGCTCAAGACCACAACATGATGGAATACAAATTCAAATACAGCTGGGACATAAAGTCTGCATGGGTTTCTGTGCCACACTACATTCTGACGAGAGGGGAGAGTGTGACcaataggatggagggagagaagaagtatGGAGAAAAGGAATGGGAGAAGTGCTCCTCACAGTGTGACAGGAACTCTCTGATTGAGGTCATAGATGGAGAGGAAGGTCCTACAGGAAGAAAGTTAGAGCATCAGAAGGCCAGAGACAGTGAGGAGATGCGAAACAGTGATGGATATGTGAAAATGAGAGAGATTGGTAAAAGAAAGGAAGTGGAGGTAGAGGTTACAAAAATCTGTACCTCCGGTGATGAAATGTCCATCATGGTTCTGGAGATACAAGGCAATGCTAGGCCTATGACAGACTCCCAGACTCCATTGAAGGGCAAAGGAAAGCAACAACATAGCCTTCCATACAAGAGAACTGAAGGACTTCAAGAGGAGATCAATTCAAAGGGTGAAATGCTTGAGGGTGGAAGACAAGTCAACTTCCCTGGGTGCCAGGCACAGAAACACAGAAGTCTGGGTGTGTTGGGTGATGTTGCACGCTTCTGGAGAAAGGAGAAAAGAGTCCACAAggcgaaagacagagaggagaaggacagagtGGGCCAGACATGGCGAGACCAGGGAGGAAATGGCAGGGAGCAAtggaatggagagacagagaggggtggagtTGGTAGGAGTAgaagagctagacagagaggaaACCAGTTGCTGCTTTTTTCTAGGCAAAAGCACAGCAACTGGAATGGCTCGCATCCATCAGAGAGCAGCTGTGACTGGAGGAGCAGGGAGAAAGAGGTGCCTGAGAAACATGTTGAGAGTAGGATGGATAGGCAGAGAGGGTTTGTGGGCGGGAAAACTATTTGATTAATATCCCTCTATTCGCGCTTCAATATCCGGCAAAGTTGAACGGTGACGGTCATTTCCACCTCCGACAGTTTCCGTGTGGGCACAATCAAGACAACCGCTGTAAACAAACT
>XM_036945183.1
GCCTGTAAACTTTACAACTGACTTAACAAAACAAGGTTCTACAAAATCCCTTTCTCTTTTATGATTCTGTCAAAACATAATGTCGCTAGCTATTCATGGGTTGCACAGATGCCGCATCATATTGATGTCCAACTGATGCTCAGTCTTTCTGAACTGGGGCTaatgacattgctaaagtagaCAACCTTTGTAGAAAACTAAATTGGCATCATTACGATGTCAAGTTTACTTGAGAAATGGCAGTGTTGGCATCCTGAGCTAGCAAAGTTCGACAGAAAAAGCTAGCAATGCTAACGTTAAGCTAACTAAAATGTCGATGCCCAgtcgtagctagctagcttaagtTATACTGCATATAAAGTAAATCTGGCGACATTACAATGATGACAAAAGCTTGTCCTACTAATTATTTTCCTCCTTTTTAAAATGTCATTGTGTTTCCAAGCCACGGTAATGCACTTCATACAATATCTTCATCAACACCAAGAACACATTAAATAGAATGCTCAGCTGGGCATCAGTCGAATCAAAGGAATGTTCAAAACAATATCTTCATTACGAAACGTGCAGCCCAGGAATACAATGAAACCACCTGTTATGACGCGACATTTGCCTGGTTAACtgtgttccatttgttttgaatCTAAGCAACTGCAACAATGccgaagagaggaagaaagAAGAAGAGGTCAACCCCTGTAACCATCGAGAACGCCAGGAACAATGAGACGACACATGACTCGATACGCCGTTACGCAGGAAAAATTGTGGACTACATTGCCCAGTCAACCACTGCTTTCTCTCAGGAAGATGTTTCCGGTATAGGCCTACATAACATCTTGGGGAAGACTGTAGAGGGCCTTCTCCAAAAAGTGTGCGGAGGGGTCTCAAGCATCCTGAACAAGTATTTGTATGGGGCGGGGGTGTTGTCTGATGCGGTGATCCCAGTAAATCTCTTGCCTGTAGCTTCAAATGGAGACAATCGGAAAATGGAAAAAAGATGGCAGGACTGCACTGAGGAAGACTGTGAACTGATAATTATCCGACTGACGGGGACTGTAATTATCACCATGTTGGATAGTGTTATGGAGAGTTGCAGGACGGACCCCACACACAGTTCATTCTTAGAAGAACTGGGGCTCACCATGGAAATGGTAAAGGTCATACGTGAAGTAGCAGAATGTGCAGCGAACGCCACAAGTAATGATTTCAGTCAGTTCACAGTTGGAGGAGTTCCTCTCTTTCAGAGACCACTGAGCAATCTCTCCTCTGGGCCGAGTCAACCAGCACCCCCCCAAAATGCCTTGCCAACATCCACTGTTCCCACACCTGTCTCAAAGGGGAGCTCAGACAGTCCCAGATCCACTGACTCAGGGTCCTCACAAGTCAGGAAGCCAAGACAATCAACAGAAGGAGTTCAGAGACTCTCCGAAAGGCAGCAGAATCCAGGGGAGGAGATCACGTCTCTAGTGATTGAAACCATTCTACGGTCAGTTGCGGATTTAGCCAGGCATGGACTTCTGCCAAGCTGCACCCAGTAGACTGGATGCCCCCTTTTTATGGAGGTGATGCAGAAAACAAACATGTGAAGCCAATTCATAAAAGCATTAATTAAACAAATATGTTGTTAAAAGCTGGCAGAGAAAGCCATTAGGGAAGCTGTGCACACAGTTCTGACAGATGGACGCCATGGGGAGTTTTCAAGCCTAAGAATAATGGAGCTGAAATGCATTGATATGTCGAAGACACCTAAAGCCCAATCAACCTTGGAGTCCATTCAGCTGCCCAAAGACAGTGATGACAGCTTGAAATCAGGATCCTGTGAAGACTCCCTGATTGCTGAACCTCATGCTGACCAAGTTGACACCATCAAGGCATCTATGAACACTGAAATCCACTCAGTGGTTACTAAGGCCACAGTGGTCTATGCTAACCAACCTGAGGCACTGTCCAGTGAAGTGCTTCTGGGCACTGAAGGTAATGGATATGTTGCTGACCATGCTGTGGTGGGTTCTCTGACTCCAGACTGTGACCTGGCATTGGTAGAAGGGCTGGACCCTGGGTGGCACACTGCCCTGGTACTGATGGAGACCTTAGTGAATCCTGGCAATGACTCTGACCTGACTCTGTCTGACTCCAGTGAAGTGTCACTGATCACTGACGACCTGCCAGTGGTGGACTCAGCTGTTGACTCCAGAGGGCAGCAGAGGGCAGAGGATGACTTGCAAAGCACTGACCAGCTGCTAACGAGGTCCTGTGCAGACTGTGTGACCACAGAGAAGCACTATACTGTACCGTTTGAGGACTCTTTGAACTCTGACAAGGAAATCTCCCTCAACATTAAAGACCATGATGACCGACCTGCAGTAGACTTTCGCAGAGATTCTGTGAGCTCGTCTGACCAGTCTTTGTCCCTTGTTGCCACTGCTCTTGGATCAATAGTCACTATTGACTCTTTCAATAAGGCTCTGTTGTTTTCCAATATGTTGGACCAAGGCAAAGATAACCCTATTGACCAGCCTGTAGTGAAGTctcagaccactgaaaatctaaTTAACCCCACTTTGGTGTCAGAGTCCATTCAACCTCTCGTCAATGAAATCCTGGAAGATAACATTATCTCAGCCCCTGATGACAGAACTGTgttcactacagaccctgtagGATCACATGAGATTGTAATATTTATATCTAGAATGCACTTAGGCAGTGTCATCACCTGTCATGATGACCAGTTTTTGGAGTCAGACCGTGAGGATGACATGGTTGACCCTTTGTCTCACACCAGTCATAGCCATCATCTGTGCGAGTCAGTCATGAGGCCCAAAGGTCAAGTCCAACTCAGTGGACATACTTGGTCACCCTCTTATGAGACTGATGACTGCCGTCGCTATGCTCAAGACCACAACATGATGGAATACAAATTCAAATACAGCTGGGACATAAAGTCTGCATGGGTTTCTGTGCCACACTACATTCTGACGAGAGGGGAGAGTGTGACcaataggatggagggagagaagaagtatGGAGAAAAGGAATGGGAGAAGTGCTCCTCACAGTGTGACAGGAACTCTCTGATTGAGGTCATAGATGGAGAGGAAGGTCCTACAGGAAGAAAGTTAGAGCATCAGAAGGCCAGAGACAGTGAGGAGATGCGAAACAGTGATGGATATGTGAAAATGAGAGAGATTGGTAAAAGAAAGGAAGTGGAGGTAGAGGTTACAAAAATCTGTACCTCCGGTGATGAAATGTCCATCATGGTTCTGGAGATACAAGGCAATGCTAGGCCTATGACAGACTCCCAGACTCCATTGAAGGGCAAAGGAAAGCAACAACATAGCCTTCCATACAAGAGAACTGAAGGACTTCAAGAGGAGATCAATTCAAAGGGTGAAATGCTTGAGGGTGGAAGACAAGTCAACTTCCCTGGGTGCCAGGCACAGAAACACAGAAGTCTGGGTGTGTTGGGTGATGTTGCACGCTTCTGGAGAAAGGAGAAAAGAGTCCACAAggcgaaagacagagaggagaaggacagagtGGGCCAGACATGGCGAGACCAGGGAGGAAATGGCAGGGAGCAAtggaatggagagacagagaggggtggagtTGGTAGGAGTAgaagagctagacagagaggaaACCAGTTGCTGCTTTTTTCTAGGCAAAAGCACAGCAACTGGAATGGCTCGCATCCATCAGAGAGCAGCTGTGACTGGAGGAGCAGGGAGAAAGAGGTGCCTGAGAAACATGTTGAGAGTAGGATGGATAGGCAGAGAGGTGAGAGGCCTCTGAAAAGGGAAAAGAGCTAAAGGGAAGAAATACATTGATGTGtgttaaataaatattatttcAGATATCAGAAATTCGATTA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106576586

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945184.1 False 3926 mRNA 0.46 7 70528555 70538962
XM_036945183.1 True 3880 mRNA 0.46 6 70528556 70538720

Neighbor

gene id symbol gene type direction distance location
LOC110490638 LOC106609738 coding upstream 727 70523460 ~ 70527828 (+)
nav3 LOC106609740 coding upstream 10340 70276077 ~ 70518215 (+)
LOC110490865 fel coding upstream 526506 69999844 ~ 70002049 (+)
LOC110490673 LOC106576606 coding upstream 537997 69984935 ~ 69990558 (+)
LOC110490672 fel coding upstream 549845 69976476 ~ 69978710 (+)
LOC110490651 apex1 coding downstream 8523 70547485 ~ 70550529 (+)
LOC110490670 NA coding downstream 26939 70565742 ~ 70569724 (+)
LOC118938837 LOC106576594 coding downstream 110070 70649032 ~ 70653883 (+)
LOC110490812 LOC106576598 coding downstream 338182 70877144 ~ 71062055 (+)
LOC110490701 LOC106609709 coding downstream 618079 71157041 ~ 71158063 (+)
G1322601 NA non-coding upstream 5241 70522133 ~ 70523314 (+)
G1322596 NA non-coding upstream 31864 70496442 ~ 70496691 (+)
G1322595 NA non-coding upstream 33761 70494589 ~ 70494794 (+)
G1322592 NA non-coding upstream 36323 70491882 ~ 70492232 (+)
G1322587 NA non-coding upstream 54949 70473254 ~ 70473606 (+)
G1322407 LOC106576585 non-coding downstream 14870 70553832 ~ 70554417 (+)
G1322613 NA non-coding downstream 25638 70564600 ~ 70565042 (+)
G1322617 NA non-coding downstream 31269 70570231 ~ 70570450 (+)
G1322618 NA non-coding downstream 31888 70570850 ~ 70571051 (+)
G1322161 NA other upstream 624897 69900944 ~ 69903658 (+)
G1322119 NA other upstream 728693 69798196 ~ 69799862 (+)
G1321053 NA other upstream 1732574 68794598 ~ 68795981 (+)
G1320834 NA other upstream 2241287 68285896 ~ 68287268 (+)
G1320366 NA other upstream 2984074 67544041 ~ 67544481 (+)
G1322725 NA other downstream 304983 70843945 ~ 70847944 (+)
G1322763 NA other downstream 397263 70936225 ~ 70937145 (+)
G1323962 NA other downstream 1651461 72190423 ~ 72191163 (+)
LOC110531894 LOC106598741 other downstream 1917255 72416050 ~ 72481441 (+)
LOC110490361 LOC106609821 other downstream 2203251 72742193 ~ 72850175 (+)

Expression


Co-expression Network