LOC110490654 (LOC106576592)


Basic Information

Item Value
gene id LOC110490654
gene name LOC106576592
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70538862 ~ 70542834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564128.2
TATTCGCGCTTCAATATCCGGCAAAGTTGAACGGTGACGGTCATTTCCACCTCCGACAGTTTCCGTGTGGGCACAATCAAGACAACCGCTGTAAACAAACTTTCAGTAACGGTTTAATTCCAGAAGAAATACATTTCATCAaaaagatatgcatatcaaaacAGGTACATGGGAGGCCAACACAGTGTGCGAGTCTGACACCCTGTGTGATCCTGCTGGCCTTGTGTCCTCCACCAACCCAGAGGCTCACATTGGCAACCGCCGCCTATCACCTGGGTCTGGCAactgtggtggaggaggtggaggctgCCCAACTGGGGTTGACCAGCAGCCCTGCCAAGCTTCACCCCAGGCCCTCGAGGGCAACCTGAACGGACCCGCCCATGTACATGCCTTCACTTACCGTAGAGACAGAGATCGTAGAGGCCAGCACAAAGGCCGTGGCCCTCGCAGAGAGGGGCCCAGGGGGGCAGGGCGTGTGGCAGATAGGCCCCCGAAGCAGAGCCAGAAGGAGAGGTGGGTGGAGGACAGCCTGTCTCTACTCAAGCACCCACCTGCTTTTCCAGTGCAGGACAGCCCTGCCAAGCTGCAGCCAACCATCAGCTATGCCTCGAAAGTGAAGTCAGGGGCAGTGGGTGGAGTGCTGGAGGAGGAGGGCCGCCCAGCCATCGGTGTCCTGCTGCAGAACCAGTGGGGACTTAGTTTCATCAGTGAGGTCCTCCAAGCCACAGAGGGTTCAGTTTCCTCTCCTGCCCCCATAGCAGCACCTCAGCTCACATTTGGAGGTGAAACCGCAAACCCAACACAAGAGAGGCATCACACAGTCCAGGCCAGTGGTGAAATCCCAGTTCCTGTCACTACCTCAATCTCAATTGACCAGTACAGAGAAGAGGAAGCAAAGATCAATGGGAAGCTGCTTCTCACCTGTCACCATCTAAAGGAGGCTCTGCACTATCACACAATAGAATGGAATGTCACCTGCAACAAACAGAAAGAAGATCCCAATAAGGTAGTTTGGTATAAGAACTCCCTGGACCAGCCAGCCTAGTGACGCATAGACCTGTCTGCCacaacacacacccccacacacacccccacacgcACTCAGGTCGATGTCTTTACACAAAGCCACACTGAGACACTTTGGACTAACTCCTTGATGAGATCCACAACTAGGGACTTTTCTAACGCCTTCAAAGGCCTGCCTTAATGAATTGGACCTGGAGTTCCTATCGGCTCAAAATGATTTGTTTTAATGTCGTGTTGAGCTGGTCTTTTTTTAACAATCTTAAGAGCTGTCATTTTATTGTGAGGAACTGCAGTTTTATCAGACATTTTCTGTGTTGTCCTCTGTTGTAAGGGATCCGTCAAGCACTTTCTAATCTGTTGTGACCAATCCTTGGTACGCCTACCTTACCAGGTGTTTGTTTATTTTCACAAATTTGAAAATGTGTTATACCTGCTTCATTTGACCGTATTTTACACGGGACAGATGTGTAATCATGTCTCCAGTTTACAGGGGTGCAGACAGCACAATAAGAACGCACCCTTCCCCTGTCTGATCCTAATGCTGTTTTATTTTGTACCCTGATTGGGTGAATGTTACTCATGAATCCATATGATTACTCATGATTACACTAGCTCAGTTTTATGATttgaaatatataaaaaatacactGGAGGATAAGTGAACAGTATTGCATAATAAAATTGAATGAACTTGA

Function

NR:

description
uncharacterized protein LOC110490657

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564128.2 True 1724 mRNA 0.49 4 70538862 70542834

Neighbor

gene id symbol gene type direction distance location
LOC110490638 LOC106609738 coding upstream 11034 70523460 ~ 70527828 (+)
nav3 LOC106609740 coding upstream 20647 70276077 ~ 70518215 (+)
LOC110490865 fel coding upstream 536813 69999844 ~ 70002049 (+)
LOC110490673 LOC106576606 coding upstream 548304 69984935 ~ 69990558 (+)
LOC110490672 fel coding upstream 560152 69976476 ~ 69978710 (+)
LOC110490651 apex1 coding downstream 4651 70547485 ~ 70550529 (+)
LOC110490670 NA coding downstream 23067 70565742 ~ 70569724 (+)
LOC118938837 LOC106576594 coding downstream 106198 70649032 ~ 70653883 (+)
LOC110490812 LOC106576598 coding downstream 334310 70877144 ~ 71062055 (+)
LOC110490701 LOC106609709 coding downstream 614207 71157041 ~ 71158063 (+)
G1322601 NA non-coding upstream 15548 70522133 ~ 70523314 (+)
G1322596 NA non-coding upstream 42171 70496442 ~ 70496691 (+)
G1322595 NA non-coding upstream 44068 70494589 ~ 70494794 (+)
G1322592 NA non-coding upstream 46630 70491882 ~ 70492232 (+)
G1322587 NA non-coding upstream 65256 70473254 ~ 70473606 (+)
G1322407 LOC106576585 non-coding downstream 10998 70553832 ~ 70554417 (+)
G1322613 NA non-coding downstream 21766 70564600 ~ 70565042 (+)
G1322617 NA non-coding downstream 27397 70570231 ~ 70570450 (+)
G1322618 NA non-coding downstream 28016 70570850 ~ 70571051 (+)
G1322161 NA other upstream 635204 69900944 ~ 69903658 (+)
G1322119 NA other upstream 739000 69798196 ~ 69799862 (+)
G1321053 NA other upstream 1742881 68794598 ~ 68795981 (+)
G1320834 NA other upstream 2251594 68285896 ~ 68287268 (+)
G1320366 NA other upstream 2994381 67544041 ~ 67544481 (+)
G1322725 NA other downstream 301111 70843945 ~ 70847944 (+)
G1322763 NA other downstream 393391 70936225 ~ 70937145 (+)
G1323962 NA other downstream 1647589 72190423 ~ 72191163 (+)
LOC110531894 LOC106598741 other downstream 1913383 72416050 ~ 72481441 (+)
LOC110490361 LOC106609821 other downstream 2199379 72742193 ~ 72850175 (+)

Expression


Co-expression Network