LOC110490670


Basic Information

Item Value
gene id LOC110490670
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70565742 ~ 70569724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468737.2
TGAACATAAGAGTAGAGGCCTGGCACTCGCCTCTCATCAACCAGCCTGTGTACCGGTAGCAACTGTCCTCTTCATTCTGCAAAGGAAGGTGTGCAATACTTCTCTCTTTTTTAATGTCAACACAAGTGGCCACCACCACTAccggagtgagagacagagaggagaagatgCAGTCGCCAGCAGCGGAGGAAGAAGTTGCTGATTGAGAGtggTTTACCATTGGTGTCCAAATATCCTAGTTCTCTATGATGTTGCAGTAGAGTCTTCAACTGCAGAGGCTGAGATAGAGAGTTGACACACTCTTCCAAGACAGAGGGTCCAGCATTGAGCCAAGACACTGTCTACGAGATGGGGAGCACACATTAATATAATATGCAATCAATCAAAATCGGTCCAGTTGTTCTTAAATAAAATATTCTAAATGCCCATTATCTTAAATAAAATGCTCCAAGATGTCTCATGTCTAATACATATACTGAGTAAC
>TU1509746
TTGCCTCTGGGGGTGCTGATGAGCCAACATGTGTCCCTTAGAAAAGGAATTACTGTATCGTCTATTGACCCGAGATAGCAGATTGATTCATATTATGTATATCAGCCATAAAGACAACACTCGAGCCTACATTTGAGAATAAATATTTTCCCTCATTGTTGAACATAAGAGTAGAGGCCTGGCACTCGCCTCTCATCAACCAGCCTGTGTACCGGTAGCAACTGTCCTCTTCATTCTGCAAAGGAAGTGGCCACCACCACTAccggagtgagagacagagaggagaagatgCA
>TU1509748
gttttttttaagtggTTTACCATTGGTGTCCAAATATCCTAGTTCTCTATGATGTTGCAGTAGAGTCTTCAACTGCAGAGGCTGAGATAGAGAGTTGACACACTCTTCCAAGACAGAGGGTCCAGCATTGAGCCAAGACACTGTCTACGAGATGGGGAGCACACATTAATATAATATGCAATCAATCAAAATCGGTCCAGTTGTTCTTAAATAAAATATTCTAAATGCCCATTATC

Function

NR:

description
zinc finger protein 135-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468737.2 False 484 mRNA 0.43 3 70565901 70569724
TU1509746 False 293 lncRNA 0.46 2 70565742 70569251
TU1509748 True 236 lncRNA 0.39 1 70569438 70569673

Neighbor

gene id symbol gene type direction distance location
LOC110490651 apex1 coding upstream 15372 70547485 ~ 70550529 (+)
LOC110490654 LOC106576592 coding upstream 23067 70538862 ~ 70542834 (+)
LOC110490656 LOC106576586 coding upstream 26939 70528555 ~ 70538962 (+)
LOC110490638 LOC106609738 coding upstream 38073 70523460 ~ 70527828 (+)
nav3 LOC106609740 coding upstream 47686 70276077 ~ 70518215 (+)
LOC118938837 LOC106576594 coding downstream 79308 70649032 ~ 70653883 (+)
LOC110490812 LOC106576598 coding downstream 307420 70877144 ~ 71062055 (+)
LOC110490701 LOC106609709 coding downstream 587317 71157041 ~ 71158063 (+)
LOC110490712 nel coding downstream 725701 71295425 ~ 71400412 (+)
LOC110499746 LOC106609793 coding downstream 889083 71458807 ~ 71475849 (+)
G1322613 NA non-coding upstream 859 70564600 ~ 70565042 (+)
G1322407 LOC106576585 non-coding upstream 11484 70553832 ~ 70554417 (+)
G1322601 NA non-coding upstream 42587 70522133 ~ 70523314 (+)
G1322596 NA non-coding upstream 69210 70496442 ~ 70496691 (+)
G1322595 NA non-coding upstream 71107 70494589 ~ 70494794 (+)
G1322617 NA non-coding downstream 507 70570231 ~ 70570450 (+)
G1322618 NA non-coding downstream 1126 70570850 ~ 70571051 (+)
G1322605 NA non-coding downstream 4444 70574168 ~ 70577004 (+)
G1322620 NA non-coding downstream 9689 70579413 ~ 70579754 (+)
G1322663 NA non-coding downstream 126537 70696261 ~ 70696500 (+)
G1322161 NA other upstream 662243 69900944 ~ 69903658 (+)
G1322119 NA other upstream 766039 69798196 ~ 69799862 (+)
G1321053 NA other upstream 1769920 68794598 ~ 68795981 (+)
G1320834 NA other upstream 2278633 68285896 ~ 68287268 (+)
G1320366 NA other upstream 3021420 67544041 ~ 67544481 (+)
G1322725 NA other downstream 274221 70843945 ~ 70847944 (+)
G1322763 NA other downstream 366501 70936225 ~ 70937145 (+)
G1323962 NA other downstream 1620699 72190423 ~ 72191163 (+)
LOC110531894 LOC106598741 other downstream 1886493 72416050 ~ 72481441 (+)
LOC110490361 LOC106609821 other downstream 2172489 72742193 ~ 72850175 (+)

Expression


Co-expression Network