LOC118936248 (cmas)


Basic Information

Item Value
gene id LOC118936248
gene name cmas
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70733362 ~ 70755356 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945195.1
GGACCAGATAATCGAATCCCCTCATTGAAGCGCAATCATCGTTTTCTTGACATTGCCAGTTAACCTGTTACCAGAGTAAATTCAATAAATAGTTCAACTGAAATTGTTACTATGGCATCAAAATGAATCGTTGTTGAAATTACCTCCGAGTAAAGCTAGCAGGTCTTACGCCTCTTTTTTACTGTGCACATGTAACATTTCCTTCACACAGTTTAAGCCGTAGTAGGTCATGTAAATTAGGtacgtagctagctagttacagtgACTGCTATCCATCGCTACCGCTACAAGACTATTGCCTGCCCACCCGGCTACTGATCCTTTCAATGGCCGCTGCAAAAAAACGTACGCAATCGGACATCGAAGATGTGAGAGACAGAAAAGCAAAGGTTATTAAAGACAGCGGTGAGAAGAGACACATCGCAGCCCTGATCCTGGCGAGGGGAGGCAGTAAGGGGATCCCCCTGAAAAATATCAAAGTTCTCGCCGGTGTCCCCCTCATTGGATGGGTTCTGAGAGCTGCAGTGGACTCCAAACAGTTTGACAGTGTGTGGGTATCAACTGACCATGATGACATTGAGAAGGTAGCCAAGACATGGGGAGCTCAGGTTCACCGCAGGAGCCCAGAGGTGTCCAAAGACTCCTCCAGCTCTCTTGACACCATCCAGGAATTTGCCAGATTAAACCCAGAGGTGGATGTGATCTGTCACATCCAGGCCACGTCTCCCTGCCTGCACCCCTTCCACCTGAAGGAGGCCCTGGAGATGATCACCAAGCAGGGCTTCACGTCCGTCTTCTCCGTGGTCCGACGACACCACTTCCGCTGGCAGGAGGTGAAGAAAGGAGgTAGTGTAGCCACCCAGCCTCTGAACTTAGACCCGTGTAACAGGCCCCGGAGACAGGACTGGGATGGAGAGCTGTGTGAGAACGGATCTTTCTACATTTATACCAGAGCGACGATAGAGAGAGGCCTGCAGGGGGGGAAGTGGGCTTACTATGAGATGCTGCCAGAGTACAGTGTGGATATTGATGTGGATATCGACTGGCCCGTGGCAGAACAGAGAGTACTGAGGTTTGGTTACTTTGGCCTGGACAAGCCTGAGGTGGTGCGTCTGCTGCTGTGTAACGTCTCCGGCTGTCTGACTGACGGCCGCgtcctcatctctgtctctggAGAGGAGATGGTCTCAGTCAACACCAGAGATACTATGGGTATCCGcatgctgcagagagagggagtggagGTGATCCTGATCTCATCTAGTGAGGacctcctgaccaaggccctggcTGACAATCTATCCCAGAGGACAGGCTGCGAGGTCAGGCAGCTGGGCAAGGACATCCAGGGTGAGGTCACAGCCATGATGGATGACAAGGATCTGGACTGGAAGGAGGTCGCCTATATGGGTAATGATGCACCAGATGTTGACTGTCTGAACCTGGCTGGGCTGAGTGCAGTTCCCCGGGACGCCCCAGTGGTGGCGATCAACGCTGCTAAATACTCCTGCCACAGTGCTGCAGGCCTGGGGGCTGTGAGGGAGTTTTCTGAACACATCCTGCTGCTCAAGAAGAAGGCCAAGTCTCAGATGGAACAGGACCGCATCCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAGATCCATTCTTAACTGTAGAATGTGTTCTAAAGTAGGCATGGGCAAACTTTTTTGCTTGAGGGCCAAACAGATTTTTTGGGGATTGATTTGTTTGTCCAAATCCATTTCTGGGCCAGAAAAAGTGCAGATATTTTAAAATAcataggtccattataatttctacatCCTTTCTATCTAGTTCATGACCTGGAGTGTTTTTTTTaccaaaaataataatttcctGCCAAAAAACACTAAACTTCACATGTAAACTGGAAGAGTTGCattctcaattgcatactcctcgcaCCCACTCTCCCcgtctccttctcttccctctgaccttctccttcAATGGTttttgagaaggagacaaggACTCGAGGAATATGCAATTGAGAACATCCCCTTGTCATTCATTGTCATGTAAAAAAAGGAGTTGTCAAGAGAGCAGTAACAGACTGACACTCAGGATATTGTATTCTAAACTGCATTCTATCAATCAGACAAACCCTCTGAACTCATGCCTGGGCCAAACATTAGGCAAAGTGACAATAAAGGTTATTGAcatctctctactttctctggaGTTCTAGAAAGAAGCATATTTACTCACTTTCATGCACTTGGCTCAGGCTGAAATGTGTTTTACAGGTTGTCAGGTCAGTGTAGTTTGTGTTTTTATATTACTACAGGTTGTGTTGACAAAtacagtcagtactttttaattgtcttagttttaatgaaatgaagtatatacactgagtgtacaaaacattatgaacacctgctctctctttgacatagactgaccaggtgaatgctatgatcccttaac
>XM_036945196.1
GGACCAGATAATCGAATCCCCTCATTGAAGCGCAATCATCGTTTTCTTGACATTGCCAGTTAACCTGTTACCAGAGTAAATTCAATAAATAGTTCAACTGAAATTGTTACTATGGCATCAAAATGAATCGTTGTTGAAATTACCTCCGAGTAAAGCTAGCAGGTCTTACGCCTCTTTTTTACTGTGCACATGTAACATTTCCTTCACACAGTTTAAGCCGTAGTAGGTCATGTAAATTAGGtacgtagctagctagttacagtgACTGCTATCCATCGCTACCGCTACAAGACTATTGCCTGCCCACCCGGCTACTGATCCTTTCAATGGCCGCTGCAAAAAAACGTACGCAATCGGACATCGAAGATGTGAGAGACAGAAAAGCAAAGGTTATTAAAGACAGCGGTGAGAAGAGACACATCGCAGCCCTGATCCTGGCGAGGGGAGGCAGTAAGGGGATCCCCCTGAAAAATATCAAAGTTCTCGCCGGTGTCCCCCTCATTGGATGGGTTCTGAGAGCTGCAGTGGACTCCAAACAGTTTGACAGTGTGTGGGTATCAACTGACCATGATGACATTGAGAAGGTAGCCAAGACATGGGGAGCTCAGGTTCACCGCAGGAGCCCAGAGGTGTCCAAAGACTCCTCCAGCTCTCTTGACACCATCCAGGAATTTGCCAGATTAAACCCAGAGGTGGATGTGATCTGTCACATCCAGGCCACGTCTCCCTGCCTGCACCCCTTCCACCTGAAGGAGGCCCTGGAGATGATCACCAAGCAGGGCTTCACGTCCGTCTTCTCCGTGGTCCGACGACACCACTTCCGCTGGCAGGAGGTGAAGAAAGGAGgTAGTGTAGCCACCCAGCCTCTGAACTTAGACCCGTGTAACAGGCCCCGGAGACAGGACTGGGATGGAGAGCTGTGTGAGAACGGATCTTTCTACATTTATACCAGAGCGACGATAGAGAGAGGCCTGCAGGGGGGGAAGTGGGCTTACTATGAGATGCTGCCAGAGTACAGTGTGGATATTGATGTGGATATCGACTGGCCCGTGGCAGAACAGAGAGTACTGAGGTTTGGTTACTTTGGCCTGGACAAGCCTGAGGTGGTGCGTCTGCTGCTGTGTAACGTCTCCGGCTGTCTGACTGACGGCCGCgtcctcatctctgtctctggAGAGGAGATGGTCTCAGTCAACACCAGAGATACTATGGGTATCCGcatgctgcagagagagggagtggagGTGATCCTGATCTCATCTAGTGAGGacctcctgaccaaggccctggcTGACAATCTATCCCAGAGGACAGGCTGCGAGGTCAGGCAGCTGGGCAAGGACATCCAGGGTGAGGTCACAGCCATGATGGATGACAAGGATCTGGACTGGAAGGAGGTCGCCTATATGGGTAATGATGCACCAGATGTTGACTGTCTGAACCTGGCTGGGCTGAGTGCAGTTCCCCGGGACGCCCCAGTGGTGGCGATCAACGCTGCTAAATACTCCTGCCACAGTGCTGCAGGCCTGGGGGCTGTGAGGGAGTTTTCTGAACACATCCTGCTGCTCAAGAAGAAGGCCAAGTCTCAGATGGAACAGGACCGCATCCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAGATCCATTCTTAACTGTAGAATGTGTTCTAAAGTAGGCATGGGCAAACTTTTTTGCTTGAGGGCCAAACAGATTTTTTGGGGATTGATTTGTTTGTCCAAATCCATTTCTGGGCCAGAAAAAGTGCAGATATTTTAAAATAcataggtccattataatttctacatCCTTTCTATCTAGTTCATGACCTGGAGTGTTTTTTTTaccaaaaataataatttcctGCCAAAAAACACTAAACTTCACATGTAAACTGGAAGAGTTGCattctcaattgcatactcctcgcaCCCACTCTCCCcgtctccttctcttccctctgaccttctccttcAATGGTttttgagaaggagacaaggACTCGAGGAATATGCAATTGAGAACATCCCCTTGTCATTCATTGTCATGTAAAAAAAGGAGTTGTCAAGAGAGCAGTAACAGACTGACACTCAGGATATTGTATTCTAAACTGCATTCTATCAATCAGACAAACCCTCTGAACTCATGCCTGGGCCAAACATTAGGCAAAGTGACAATAAAGGTTATTGAcatctctctactttctctggaGTTCTAGAAAGAAGCATATTTACTCACTTTCATGCACTTGGCTCAGGCTGAAATGTGTTTTACAGGTTGTCAGGTCAGTGTAGTTTGTGTTTTTATATTACTACAGGTTGTGTTGACAAAtacagtcagtactttttaattgtcttagttttaatgaaatgaagtatatacactgagtgtacaaaacattatgaacacctgctctctctttgacatagactgaccaggtgaatgctatgatcccttaac
>XM_036945194.1
GACCAGATAATCGAATCCCCTCATTGAAGCGCAATCATCGTTTTCTTGACATTGCCAGTTAACCTGTTACCAGAGTAAATTCAATAAATAGTTCAACTGAAATTGTTACTATGGCATCAAAATGAATCGTTGTTGAAATTACCTCCGAGTAAAGCTAGCAGGTCTTACGCCTCTTTTTTACTGTGCACATGTAACATTTCCTTCACACAGTTTAAGCCGTAGTAGGTCATGTAAATTAGGtacgtagctagctagttacagtgACTGCTATCCATCGCTACCGCTACAAGACTATTGCCTGCCCACCCGGCTACTGATCCTTTCAATGGCCGCTGCAAAAAAACGTACGCAATCGGACATCGAAGATGTGAGAGACAGAAAAGCAAAGGTTATTAAAGACAGCGGTGAGAAGAGACACATCGCAGCCCTGATCCTGGCGAGGGGAGGCAGTAAGGGGATCCCCCTGAAAAATATCAAAGTTCTCGCCGGTGTCCCCCTCATTGGATGGGTTCTGAGAGCTGCAGTGGACTCCAAACAGTTTGACAGTGTGTGGGTATCAACTGACCATGATGACATTGAGAAGGTAGCCAAGACATGGGGAGCTCAGGTTCACCGCAGGAGCCCAGAGGTGTCCAAAGACTCCTCCAGCTCTCTTGACACCATCCAGGAATTTGCCAGATTAAACCCAGAGGTGGATGTGATCTGTCACATCCAGGCCACGTCTCCCTGCCTGCACCCCTTCCACCTGAAGGAGGCCCTGGAGATGATCACCAAGCAGGGCTTCACGTCCGTCTTCTCCGTGGTCCGACGACACCACTTCCGCTGGCAGGAGGTGAAGAAAGGAGgTAGTGTAGCCACCCAGCCTCTGAACTTAGACCCGTGTAACAGGCCCCGGAGACAGGACTGGGATGGAGAGCTGTGTGAGAACGGATCTTTCTACATTTATACCAGAGCGACGATAGAGAGAGGCCTGCAGGGGGGGAAGTGGGCTTACTATGAGATGCTGCCAGAGTACAGTGTGGATATTGATGTGGATATCGACTGGCCCGTGGCAGAACAGAGAGTACTGAGGTTTGGTTACTTTGGCCTGGACAAGCCTGAGGTGGTGCGTCTGCTGCTGTGTAACGTCTCCGGCTGTCTGACTGACGGCCGCgtcctcatctctgtctctggAGAGGAGATGGTCTCAGTCAACACCAGAGATACTATGGGTATCCGcatgctgcagagagagggagtggagGTGATCCTGATCTCATCTAGTGAGGacctcctgaccaaggccctggcTGACAATCTATCCCAGAGGACAGGCTGCGAGGTCAGGCAGCTGGGCAAGGACATCCAGGGTGAGGTCACAGCCATGATGGATGACAAGGATCTGGACTGGAAGGAGGTCGCCTATATGGGTAATGATGCACCAGATGTTGACTGTCTGAACCTGGCTGGGCTGAGTGCAGTTCCCCGGGACGCCCCAGTGGTGGCGATCAACGCTGCTAAATACTCCTGCCACAGTGCTGCAGGCCTGGGGGCTGTGAGGGAGTTTTCTGAACACATCCTGCTGCTCAAGAAGAAGGCCAAGTCTCAGATGGAACAGGACCGCATCCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACA
>TU1510378
AAGATGTGAGAGACAGAAAAGCAAAGGTTATTAAAGACAGCGGTGAGAAGAGACACATCGCAGCCCTGATCCTGGCGAGGGGAGGCAGTAAGGGGATCCCCCTGAAAAATATCAAAGTTCTCGCCGGTGTCCCCCTCATTGGATGGGTTCTGAGAGCTGCAGTGGACTCCAAACAGTTTGACAGTGTGTGGGTATCAACTGACCATGATGACATTGAGAAGGTAGCCAAGACATGGGGAGCTCAGGTTCACCGCAGGAGCCCAGAGGTGTCCAAAGACTCCTCCAGCTCTCTTGACACCATCCAGGAATT

Function

symbol description
cmas Predicted to enable N-acylneuraminate cytidylyltransferase activity. Predicted to be involved in N-acetylneuraminate metabolic process. Located in membrane and nucleus.

NR:

description
PREDICTED: N-acylneuraminate cytidylyltransferase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945195.1 False 2551 mRNA 0.47 9 70733362 70755356
XM_036945196.1 False 2551 mRNA 0.47 9 70733362 70755356
XM_036945194.1 False 1770 mRNA 0.50 8 70734182 70755355
TU1510378 True 310 lncRNA 0.52 2 70752185 70754993

Neighbor

gene id symbol gene type direction distance location
LOC118938838 LOC106576602 coding downstream 84326 70644164 ~ 70649036 (-)
LOC110490633 LOC106576584 coding downstream 127213 70593116 ~ 70606149 (-)
LOC110490634 LOC106609716 coding downstream 140685 70583258 ~ 70592677 (-)
LOC110490800 LOC106609708 coding downstream 144821 70574103 ~ 70588541 (-)
LOC110490632 LOC106576583 coding downstream 161664 70565688 ~ 70571698 (-)
LOC110490643 LOC106596479 coding upstream 7621 70762977 ~ 70776821 (-)
LOC118938960 NA coding upstream 21933 70776831 ~ 70848012 (-)
LOC110490694 LOC106576596 coding upstream 26339 70781695 ~ 70787736 (-)
LOC110516361 LOC106576597 coding upstream 35678 70791034 ~ 70860332 (-)
LOC118938899 NA coding upstream 137873 70893229 ~ 70894811 (-)
G1323101 NA non-coding downstream 83 70731008 ~ 70733279 (-)
G1323094 NA non-coding downstream 4085 70728898 ~ 70729277 (-)
G1323091 NA non-coding downstream 15289 70717610 ~ 70718073 (-)
G1323090 NA non-coding downstream 16940 70715989 ~ 70716422 (-)
G1323089 NA non-coding downstream 18897 70713725 ~ 70714465 (-)
G1323130 NA non-coding upstream 98198 70853554 ~ 70853785 (-)
G1323137 NA non-coding upstream 120019 70875375 ~ 70875577 (-)
G1323138 NA non-coding upstream 121442 70876798 ~ 70877602 (-)
LOC110490645 LOC106576589 other downstream 188142 70543356 ~ 70547418 (-)
G1323036 NA other downstream 196223 70536452 ~ 70537139 (-)
G1322348 NA other downstream 833659 69897748 ~ 69899703 (-)
G1321997 NA other downstream 1170322 69562310 ~ 69563040 (-)
G1321729 NA other downstream 1510334 69220303 ~ 69223028 (-)
G1323207 NA other upstream 269895 71025251 ~ 71039522 (-)
G1323296 LOC106609674 other upstream 447144 71202500 ~ 71237846 (-)
LOC118938840 LOC106576579 other upstream 1101927 71841725 ~ 71923263 (-)
LOC110500989 LOC106576674 other upstream 1292608 72022817 ~ 72150996 (-)
LOC110490626 LOC106576575 other upstream 1409277 72162661 ~ 72192809 (-)

Expression


Co-expression Network