LOC110490643 (LOC106596479)


Basic Information

Item Value
gene id LOC110490643
gene name LOC106596479
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 70762977 ~ 70776821 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564110.2
GGGAATTTAGTTATTACACACGCGCACTGCACAGAGTCGTTCCAGCTAGAAGTAGTAAATACTTTACCGTAAGTACTGCTGTTTGGTTGGCTAGCGCAATTGAATTGTTGTCTATGATGAGCACATTTACATTATTTTATGCAATATTGAAACCTGGAGTTCTGTGATTGAGAAAATAGACATTGGACATGCTTCTACCATTTTGCACCTTAGGTATCCTCGTGTCGATAATATTGATCGCCATCATAGTTTTTAACGCATTGACCTCAATCATTACGGTACAATTCTATGGTGACGTTCTTTCTGATTTCGTAGCCACAATGAAATATCATAATACGCCACTTGTTCTGTTtataaatgtaatatttgtaGGATTAATAGGCCGTCCTTCAGTGTACACTACTGACAGTGTAGTCAGTAGTATATATTGTAACCTaaatacctagctagctacagtgaGCTAGAACACaataagtagctagctagattcaTCAGCCGACTGCTAGACATAGCTACCGCTAACGTTActggttagttagctagctagttaagttACAGTGATACCGCCACGTCTTCTTAACCTCCCACTGGGCTACTGAGTGACCATTTACAATGGCTGCTGCTAGAAAACGAACGCGATCAGGCATCGAAGATGTGAGAGACAGAAAAGCAAAGGTTATTAAAGACAGCGGTGAGAAGAGACACATCGCAGCCCTGATCCTGGCGAGGGGAGGCAGTAAGGGGATCCCCCTGAAGAATATCAAAATGCTAGCCGGTGTCCCACTCATCGGATGGGTTCTGAGAGCTGCAGTGGACTCCAAACAGTTTGACAGTGTGTGGGTATCAACTGACCATGATGACATTGAGAAGGTAGCCACGGCATGGGGAGCTCAGGTTCACCGCAGGAGCCCAGAGGTGTCCAAAGACTCCTCCAGCTCTCTTGACACCATCCAGGAATTCGCCCGATTAAACCCAGAGGTGGATGTGATCTGTCACATCCAGGCCACGTCTCCCTGCCTGCACCCCTTCCACCTGAAGGAGGCCCTGGAGATGATCACCAAGCAGGGCTTCACGTCCGTCTTCTCCGTGGTCCGACGACACCACTTCCGCTGGCAGGAGGTGAAGAAAGGAGgTAGTGTAGCCACCCAGCCTCTCAACCTGGATCCATCCAACAGGCCCCGGAGACAGGACTGGGATGGAGAGCTGTGTGAGAACGGATCTTTCTATTTTTCCACCAGAGCCCTTATAGAGGAAGGTGTTTTGCAGGGGGGGAAGTGGGCTTACTATGAGATGCTGCCAGAGTACAGTGTGGATATTGATGTGGATATCGACTGGCCCGTGGCAGAACAGAGAGTACTGAGGTTTGGTTACTTTGGCCTGGACAAGCCTGAGGTGGTGCGTCTGCTGCTGTGTAACGTCTCCGGCTGTCTGACTGACGGCCGCgtcctcatctctgtctctggAGAGGAGATGGTCTCAGTCAACACCAGAGATACTATGGGTATCCGcatgctgcagagagagggggtggagGTGATCTTGATCTCGTCCGGTGAGGACCCTGTGACCAAGGCCCTGGCTGACAATCTATCCCAGAGGACAGGCTGCGAGGTCAGGCAGCTGGGCAAAGACATCCAGGGTGAGGTCAAAGCCATGATGGATGACAAGGATCTGGACTGGAAGGAGGTCGCCTATATGGGTAATGATGCACCAGATGTTGACTGTCTGAACCTGGCTGGGCTGAGTGCAGTACCCCGGGACGCCCCAGTGGTGGCGATCAACGCTGCTAAATACTCCTGCCACAGTGCTGCAGGCCTGGGGGCTGTGAGGGAGTTTTCTGAACACATCCTGCTGCTCAAGAAGAAGGCCAAGTCTCAGATGGAACAGGACCGCATCCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACATAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACA
>XM_036945191.1
TTTCCATACAATTGTGTCGAAAAATAGGTTAATTACACGAGGCTTTGATCAAAATAGTGTACACTAGTGGCACCTGCTGGTCAAAATAAGCCTTTTCCTATTCTACCGAAACGAATACCAGACGGTTATTCGacaaacttgaaaataaaagagagccgcacactccaggagctcagatgcaaacatttaattaccaacgtttcgacggTGGTTATTCGACAAAACACATCTTTGGAGGTCATTGATAACGTGTTTCCGATAAAGCGATACAATATCGGCACACTGCTTAACGATTTCGATGCATGACTCCGAGCTCCCGGTATCAGACAAAACGAACGCGATCAGGCATCGAAGATGTGAGAGACAGAAAAGCAAAGGTTATTAAAGACAGCGGTGAGAAGAGACACATCGCAGCCCTGATCCTGGCGAGGGGAGGCAGTAAGGGGATCCCCCTGAAGAATATCAAAATGCTAGCCGGTGTCCCACTCATCGGATGGGTTCTGAGAGCTGCAGTGGACTCCAAACAGTTTGACAGTGTGTGGGTATCAACTGACCATGATGACATTGAGAAGGTAGCCACGGCATGGGGAGCTCAGGTTCACCGCAGGAGCCCAGAGGTGTCCAAAGACTCCTCCAGCTCTCTTGACACCATCCAGGAATTCGCCCGATTAAACCCAGAGGTGGATGTGATCTGTCACATCCAGGCCACGTCTCCCTGCCTGCACCCCTTCCACCTGAAGGAGGCCCTGGAGATGATCACCAAGCAGGGCTTCACGTCCGTCTTCTCCGTGGTCCGACGACACCACTTCCGCTGGCAGGAGGTGAAGAAAGGAGgTAGTGTAGCCACCCAGCCTCTCAACCTGGATCCATCCAACAGGCCCCGGAGACAGGACTGGGATGGAGAGCTGTGTGAGAACGGATCTTTCTATTTTTCCACCAGAGCCCTTATAGAGGAAGGTGTTTTGCAGGGGGGGAAGTGGGCTTACTATGAGATGCTGCCAGAGTACAGTGTGGATATTGATGTGGATATCGACTGGCCCGTGGCAGAACAGAGAGTACTGAGGTTTGGTTACTTTGGCCTGGACAAGCCTGAGGTGGTGCGTCTGCTGCTGTGTAACGTCTCCGGCTGTCTGACTGACGGCCGCgtcctcatctctgtctctggAGAGGAGATGGTCTCAGTCAACACCAGAGATACTATGGGTATCCGcatgctgcagagagagggggtggagGTGATCTTGATCTCGTCCGGTGAGGACCCTGTGACCAAGGCCCTGGCTGACAATCTATCCCAGAGGACAGGCTGCGAGGTCAGGCAGCTGGGCAAAGACATCCAGGGTGAGGTCAAAGCCATGATGGATGACAAGGATCTGGACTGGAAGGAGGTCGCCTATATGGGTAATGATGCACCAGATGTTGACTGTCTGAACCTGGCTGGGCTGAGTGCAGTACCCCGGGACGCCCCAGTGGTGGCGATCAACGCTGCTAAATACTCCTGCCACAGTGCTGCAGGCCTGGGGGCTGTGAGGGAGTTTTCTGAACACATCCTGCTGCTCAAGAAGAAGGCCAAGTCTCAGATGGAACAGGACCGCATCCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACATAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACA
>XM_036945192.1
gaGCATTTCCATACAATTGTGTCGAAAAATAGGTTAATTACACGAGGCTTTGATCAAAATAGTGTACACTAGTGGCACCTGCTGGTCAAAATAAGCCTTTTCCTATTCTACCGAAACGAATACCAGACGGTTATTCGacaaacttgaaaataaaagagagccgcacactccaggagctcagatgcaaacatttaattaccaacgtttcgacggTGGTTATTCGACAAAACACATCTTTGGAGGTCATTGATAACGTGTTTCCGATAAAGCGATACAATATCGGCACACTGCTTAACGATTTCGATGCATGACTCCGAGCTCCCGGTATCAGACAAAACGAACGCGATCAGGCATCGAAGATGTGAGAGACAGAAAAGCAAAGGTTATTAAAGACAGCGGTGAGAAGAGACACATCGCAGCCCTGATCCTGGCGAGGGGAGGCAGTAAGGGGATCCCCCTGAAGAATATCAAAATGCTAGCCGGTGTCCCACTCATCGGATGGGTTCTGAGAGCTGCAGTGGACTCCAAACAGTTTGACAGTGTGTGGGTATCAACTGACCATGATGACATTGAGAAGGTAGCCACGGCATGGGGAGCTCAGGTTCACCGCAGGAGCCCAGAGGTGTCCAAAGACTCCTCCAGCTCTCTTGACACCATCCAGGAATTCGCCCGATTAAACCCAGAGGTGGATGTGATCTGTCACATCCAGGCCACGTCTCCCTGCCTGCACCCCTTCCACCTGAAGGAGGCCCTGGAGATGATCACCAAGCAGGGCTTCACGTCCGTCTTCTCCGTGGTCCGACGACACCACTTCCGCTGGCAGGAGGTGAAGAAAGGAGgTAGTGTAGCCACCCAGCCTCTCAACCTGGATCCATCCAACAGGCCCCGGAGACAGGACTGGGATGGAGAGCTGTGTGAGAACGGATCTTTCTATTTTTCCACCAGAGCCCTTATAGAGGAAGGTGTTTTGCAGGGGGGGAAGTGGGCTTACTATGAGATGCTGCCAGAGTACAGTGTGGATATTGATGTGGATATCGACTGGCCCGTGGCAGAACAGAGAGTACTGAGGTTTGGTTACTTTGGCCTGGACAAGCCTGAGGTGGTGCGTCTGCTGCTGTGTAACGTCTCCGGCTGTCTGACTGACGGCCGCgtcctcatctctgtctctggAGAGGAGATGGTCTCAGTCAACACCAGAGATACTATGGGTATCCGcatgctgcagagagagggggtggagGTGATCTTGATCTCGTCCGGTGAGGACCCTGTGACCAAGGCCCTGGCTGACAATCTATCCCAGAGGACAGGCTGCGAGGTCAGGCAGCTGGGCAAAGACATCCAGGGTGAGGTCAAAGCCATGATGGATGACAAGGATCTGGACTGGAAGGAGGTCGCCTATATGGGTAATGATGCACCAGATGTTGACTGTCTGAACCTGGCTGGGCTGAGTGCAGTACCCCGGGACGCCCCAGTGGTGGCGATCAACGCTGCTAAATACTCCTGCCACAGTGCTGCAGGCCTGGGGGCTGTGAGGGAGTTTTCTGAACACATCCTGCTGCTCAAGAAGAAGGCCAAGTCTCAGATGGAACAGGACCGCATCCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACATAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACA
>XM_036945193.1
gaGCATTTCCATACAATTGTGTCGAAAAATAGGTTAATTACACGAGGCTTTGATCAAAATAGTGTACACTAGTGGCACCTGCTGGTCAAAATAAGCCTTTTCCTATTCTACCGAAACGAATACCAGACGGTTATTCGacaaacttgaaaataaaagagagccgcacactccaggagctcagatgcaaacatttaattaccaacgtttcgacggTGGTTATTCGACAAAACACATCTTTGGAGGTCATTGATAACGTGTTTCCGATAAAGCGATACAATATCGGCACACTGCTTAACGATTTCGATGCATGACTCCGAGCTCCCGGTATCAGACAAAACGAACGCGATCAGGCATCGAAGATGTGAGAGACAGAAAAGCAAAGGTTATTAAAGACAGCGGTGAGAAGAGACACATCGCAGCCCTGATCCTGGCGAGGGGAGGCAGTAAGGGGATCCCCCTGAAGAATATCAAAATGCTAGCCGGTGTCCCACTCATCGGATGGGTTCTGAGAGCTGCAGTGGACTCCAAACAGTTTGACAGTGTGTGGGTATCAACTGACCATGATGACATTGAGAAGGTAGCCACGGCATGGGGAGCTCAGGTTCACCGCAGGAGCCCAGAGGTGTCCAAAGACTCCTCCAGCTCTCTTGACACCATCCAGGAATTCGCCCGATTAAACCCAGAGGTGGATGTGATCTGTCACATCCAGGCCACGTCTCCCTGCCTGCACCCCTTCCACCTGAAGGAGGCCCTGGAGATGATCACCAAGCAGGGCTTCACGTCCGTCTTCTCCGTGGTCCGACGACACCACTTCCGCTGGCAGGAGGTGAAGAAAGGAGgTAGTGTAGCCACCCAGCCTCTCAACCTGGATCCATCCAACAGGCCCCGGAGACAGGACTGGGATGGAGAGCTGTGTGAGAACGGATCTTTCTATTTTTCCACCAGAGCCCTTATAGAGGAAGGTGTTTTGCAGGGGGGGAAGTGGGCTTACTATGAGATGCTGCCAGAGTACAGTGTGGATATTGATGTGGATATCGACTGGCCCGTGGCAGAACAGAGAGTACTGAGGTTTGGTTACTTTGGCCTGGACAAGCCTGAGGTGGTGCGTCTGCTGCTGTGTAACGTCTCCGGCTGTCTGACTGACGGCCGCgtcctcatctctgtctctggAGAGGAGATGGTCTCAGTCAACACCAGAGATACTATGGGTATCCGcatgctgcagagagagggggtggagGTGATCTTGATCTCGTCCGGTGAGGACCCTGTGACCAAGGCCCTGGCTGACAATCTATCCCAGAGGACAGGCTGCGAGGTCAGGCAGCTGGGCAAAGACATCCAGGGTGAGGTCAAAGCCATGATGGATGACAAGGATCTGGACTGGAAGGAGGTCGCCTATATGGGTAATGATGCACCAGATGTTGACTGTCTGAACCTGGCTGGGCTGAGTGCAGTACCCCGGGACGCCCCAGTGGTGGCGATCAACGCTGCTAAATACTCCTGCCACAGTGCTGCAGGCCTGGGGGCTGTGAGGGAGTTTTCTGAACACATCCTGCTGCTCAAGAAGAAGGCCAAGTCTCAGATGGAACAGGACCGCATCCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACAGAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACATAAATACATTCTAAACTCTAGAATGTGTTCTAAAGTCACA
>TU1510380
tttttaaatacatgtaattttctaaaatatacttaagtatcaaaagtacaactacaaatcatttcaaattacttatattatgcaaaccagaTAGCGCGATTTTTTGTATTTACGGAAAGCCAGGTGCACATTCCCAACGCTCAGGCAtattttacaaatgaagcatgtgtgtttagggagtccgccagatcagaggcaatagggatgttCTCTTTAATAAGCacgtgaatttgacaattttcctgtcctgctaagcgttcaaaatgtaacgagtacttttgggtgttaaGGAATATatatgtatggagtaaaaagcacaatattttcttatggaatgtagtaaagtaaaagtagccaaaaatataaatagtaaagtacagacccccaaaaactacttaagtagtactttaaagttttTTGAATGTATTCTACAGTGGTAGATTAAAACACTGTAGAATAGTGaaccagatatttcaccggatgtataacatttaaatgtgaagcatccgtttggcgtttccactcactaccaaatatggtgatgcgAGGAAGCCCAGTGCCCTGCAATGGATGTATAATTATTTTTGCCGAAATTCTGCACATTTACTAATCGATGAAGCTAGTGTTGGGGAAACGaagcttcctgaagcattgaGCATTTCCATACAATTGTGTCGAAAAATAGGTTAATTACACGAGGCTTTGATCAAAATAGTGTACACTAGTGGCACCTGCTGGTCAAAATAAGCCTTTTCCTATTCTACCGAAACGAATACCAGACGGTTATTCGacaaacttgaaaataaaagagagccgcacactccaggagctcagatgcaaacatttaattaccaacgtttcgacggTGGTTATTCGACAAAACACATCTTTGGAGGTCATTGATAACGTGTTTCCGATAAAGCGATACAATATCGGCACACTGCTTAACGATTTCGATGCATGACTCCGAGCTCCCGGTATCAGACGTATGTATCATCTTATCGCCATACATTTTTATGTTTCCAAAACAACAATCAGTAAAATAGTACAACGTTGCC

Function

GO:

id name namespace
GO:0006054 N-acetylneuraminate metabolic process biological_process
GO:0009103 lipopolysaccharide biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0008781 N-acylneuraminate cytidylyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564110.2 False 2100 mRNA 0.48 8 70762977 70775712
XM_036945191.1 False 1802 mRNA 0.50 9 70762977 70776163
XM_036945192.1 False 1767 mRNA 0.50 10 70762977 70776168
XM_036945193.1 False 1767 mRNA 0.50 10 70762977 70776168
TU1510380 True 1058 lncRNA 0.37 1 70775764 70776821

Neighbor

gene id symbol gene type direction distance location
LOC118936248 cmas coding downstream 7621 70733362 ~ 70755356 (-)
LOC118938838 LOC106576602 coding downstream 113941 70644164 ~ 70649036 (-)
LOC110490633 LOC106576584 coding downstream 156828 70593116 ~ 70606149 (-)
LOC110490634 LOC106609716 coding downstream 170300 70583258 ~ 70592677 (-)
LOC110490800 LOC106609708 coding downstream 174436 70574103 ~ 70588541 (-)
LOC118938960 NA coding upstream 1121 70776831 ~ 70848012 (-)
LOC110490694 LOC106576596 coding upstream 5527 70781695 ~ 70787736 (-)
LOC110516361 LOC106576597 coding upstream 14866 70791034 ~ 70860332 (-)
LOC118938899 NA coding upstream 117061 70893229 ~ 70894811 (-)
LOC118936537 LOC106594938 coding upstream 397802 71173970 ~ 71198905 (-)
G1323101 NA non-coding downstream 29698 70731008 ~ 70733279 (-)
G1323094 NA non-coding downstream 33700 70728898 ~ 70729277 (-)
G1323091 NA non-coding downstream 44904 70717610 ~ 70718073 (-)
G1323090 NA non-coding downstream 46555 70715989 ~ 70716422 (-)
G1323130 NA non-coding upstream 77386 70853554 ~ 70853785 (-)
G1323137 NA non-coding upstream 99207 70875375 ~ 70875577 (-)
G1323138 NA non-coding upstream 100630 70876798 ~ 70877602 (-)
G1323151 NA non-coding upstream 121233 70897401 ~ 70898052 (-)
LOC110490645 LOC106576589 other downstream 217757 70543356 ~ 70547418 (-)
G1323036 NA other downstream 225838 70536452 ~ 70537139 (-)
G1322348 NA other downstream 863274 69897748 ~ 69899703 (-)
G1321997 NA other downstream 1199937 69562310 ~ 69563040 (-)
G1321729 NA other downstream 1539949 69220303 ~ 69223028 (-)
G1323207 NA other upstream 249083 71025251 ~ 71039522 (-)
G1323296 LOC106609674 other upstream 426332 71202500 ~ 71237846 (-)
LOC118938840 LOC106576579 other upstream 1081115 71841725 ~ 71923263 (-)
LOC110500989 LOC106576674 other upstream 1271796 72022817 ~ 72150996 (-)
LOC110490626 LOC106576575 other upstream 1388465 72162661 ~ 72192809 (-)

Expression


Co-expression Network