LOC110490701 (LOC106609709)


Basic Information

Item Value
gene id LOC110490701
gene name LOC106609709
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71157041 ~ 71158063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945207.1
CAATGCATATAACCTTGAGATGGAAGAAGTTTCCCTTTGTACTTGCCTTTGCATTTTGATGTGACTGCTTGCACCCCAGAGCACTCTGCATAAAGCTGTTACCTCGACCACAACCACAGACTCAACTCTTCTCCTTTACAGAGTCAACTTGTTCCTGAAGATCTCTATCTAAACAGTCATGGAAGCCACCCTGACAGCCAGTGAGTGCCAGGTAGGGGAACAGAATGACCTACTGCTTTCACTGAGAGCCACAGTGGAGAAACAGAGTTCTGCACTCCAAGAGCTGAGAGCCACCGTGGAGGaattgaagagagagaacagggagagaccGAAGGTAGCCTTCTCAGCTTCACTGTCTGAAACCAAAGGACCATTCAATACTGACATCACCCTGGTCTACAAGCATGTCTTCACCAACATTGGCAATGCTTACAGTCCGGTGACTGGCATCTTTAAGGCGCTGGTGAGTGGAATCTACTACTTCAGATTCACTGCCTTTGGATTCACCTCCAAACATAGAAGAGTGTCCCTGTACAAAGGAGGACAACTTATGGTGACTGTGACTGACCATAGCACACCACATGATGGAGAAGACAGTGGATCCAATGGTGTCACCCTGCAGCTGGTAGAAGGTGAAGAGGTGTACACCCGTCTTAAAGCAGAACATCAAGTCTATGATGACGGGGCTCACCACACCACCTTCACTGGATTCCTGATCTGCTCGTAGGAAGCAGAGTAACAGTTGTTAGCAAAAACTAGCATTGGGTTAAATTTCAGCTTTTTTATTCAGTAAAATTGTTAATGGATAGATGTTAACAGTTCCAGTGATTTTACATTCTCTAAACTAAAATAGAAAAACATTGAAACTAGGTTTAGACAATGTGAAAGTAATTGACAAGGTTACAAGTTTAATTGACAAGTTTTTGATTTGCTACTGAAATACATTGACTGTGGTGTTTTATGCGATGCTCAAGACATTGAGTTGTGTGTttgatttaaaataaaataagataCACATTGAAG

Function

NR:

description
complement C1q tumor necrosis factor-related protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945207.1 True 1023 mRNA 0.43 1 71157041 71158063

Neighbor

gene id symbol gene type direction distance location
LOC110490812 LOC106576598 coding upstream 94986 70877144 ~ 71062055 (+)
LOC118938837 LOC106576594 coding upstream 503158 70649032 ~ 70653883 (+)
LOC110490670 NA coding upstream 587317 70565742 ~ 70569724 (+)
LOC110490651 apex1 coding upstream 606512 70547485 ~ 70550529 (+)
LOC110490654 LOC106576592 coding upstream 614207 70538862 ~ 70542834 (+)
LOC110490712 nel coding downstream 137362 71295425 ~ 71400412 (+)
LOC110499746 LOC106609793 coding downstream 300744 71458807 ~ 71475849 (+)
LOC110499745 LOC106576507 coding downstream 320406 71478469 ~ 71488470 (+)
LOC110499701 LOC106576510 coding downstream 472229 71630292 ~ 71685611 (+)
LOC110490715 zcrb1 coding downstream 576396 71734459 ~ 71737191 (+)
G1322814 NA non-coding upstream 38567 71117047 ~ 71118474 (+)
G1322807 NA non-coding upstream 54453 71102353 ~ 71102588 (+)
G1322805 NA non-coding upstream 86871 71069525 ~ 71070170 (+)
G1322804 NA non-coding upstream 88362 71068455 ~ 71068679 (+)
G1322816 LOC106594938 non-coding downstream 17402 71175465 ~ 71179032 (+)
G1322833 NA non-coding downstream 36370 71194433 ~ 71194666 (+)
G1322836 LOC106609682 non-coding downstream 39968 71198031 ~ 71198872 (+)
G1322837 NA non-coding downstream 41055 71199118 ~ 71199401 (+)
G1323265 NA non-coding downstream 43016 71201079 ~ 71236285 (+)
G1322763 NA other upstream 219896 70936225 ~ 70937145 (+)
G1322725 NA other upstream 309097 70843945 ~ 70847944 (+)
G1322161 NA other upstream 1253383 69900944 ~ 69903658 (+)
G1322119 NA other upstream 1357179 69798196 ~ 69799862 (+)
G1321053 NA other upstream 2361060 68794598 ~ 68795981 (+)
G1323962 NA other downstream 1032360 72190423 ~ 72191163 (+)
LOC110531894 LOC106598741 other downstream 1298154 72416050 ~ 72481441 (+)
LOC110490361 LOC106609821 other downstream 1584150 72742193 ~ 72850175 (+)
G1324156 LOC106576365 other downstream 1695503 72853566 ~ 72856022 (+)
G1324195 NA other downstream 1702757 72860820 ~ 72865809 (+)

Expression


Co-expression Network