LOC110490709 (LOC106609674)


Basic Information

Item Value
gene id LOC110490709
gene name LOC106609674
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71199520 ~ 71237895 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945211.1
TGTTTGGGCTCGCCACCAGCTGACAAAAACGAAAAGACAACGCGGAAGTAAAACTTCAAGCGGGTTTGTTTTGTTCTTGCCCACCATTCTTTCCTCGTGGACGAAGCCATACTAGCTGAATACCCAACTCTCCGTCGACAGAAACATGTCTAAACTACAATTGTTTCGTGTGTTTTTAAATGAGCGTTTAACAGCGGCAGCTGTGGAGATTTTCGGGGCAGTTGAAGAAACGGTAGCGGACTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGGTCACACCGGAGATAAAACGATGCAGAATAGacTCCCTGCAACTCTCTGTCTCTGAGGAGGAGGTTATCCCTGATCAGTGGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGAACCCAGAGCTTCcacagattaaagaggaacaggaagaaATCAGGACCAGTCAGGACGAAGAGCAGCTTCAAGGGCTGGAGGCTGATATCATAGAGTTCAAATTCACTCCTTCCTGTGTGAAAAATGAATGTGATCAGGAGGACCCATTTCAGTCCTTGACTCTTCCCCAAACCCAGActgtggagaacagagagagtgatcCTAAACAAGTGGATCTCACACCTTTTGTTACTGTGACCCACTTTAAGGGTCTCAACATTCCCTGTGACCCTCCAGACAATCAAAACAATGCCTCCAGCCACGGCTCAGCCGTAAGCAGCGACCCAGTAGGACTTGACAGCAGCCCACGATTGAATCCCAGCCCATCATTGGATCCAAACCCATCGATGGGGGAACACTGTTTCAAACCCAGCACCACGTCTAGAAAAACTCACCACTGCCGTGACTGTGGTGAAATGTTTGCTCTGAAAGCTGACCTGAAGAGTCATGTGACTCTCGCCATGCAGAGACCCAGCGAATGCCACGTCTGCAGAAAACACTACAACTCCAGCTGTAAACTGACGGCCCATGTCCGACTCTGTCGCGGTAGGAAACCCTGCACCAGCCCTGTTTGTAGCAAGACCTTCAAACTCAAAGCAGACCTGTCCAAGCACATGAggattcacacaggggagaaatcatTTAGTTGTGGAGACTGTGGGAAGCGCTTCAATCGCAAGGGGAACCTTACTGATCATATTCctattcacacaggagagaaagcATTTAGCTGTGCTGACTGCGGAAAAAGATTCAGTCAGAAGGGGACCCTACGGAAGCATAgactgactcacacaggagagaaacaatTTATCTGTAgagactgtgggaaaagcttctATCAGAGAGGGGACCTAAGTAGGCATATacggactcacacaggagagaaactttTTATatgtggtgactgtgggaaaagcttcaatTTGAAGGGGAACCTGAAGAAGCATGAACTGACTCACACAGAAGATaaaccatttagctgtggtgactgtgggaaaagcttcaatcACAAGTCTAACTTACTGACGCATGTTAAAAACATCCACAAAGGAGGAAAACAGGAGGAAATCTTAAAGAACTGTTTAGTCACAAGATGAGAATAAAAGGGCAGGATGTGGACAATACGATGATACCTCTCCTAGGGACCTGCTCTCCATGCTTCAGGATTAAAGTTCCTCTGGTCTCTGATCTATTCTATTGGTAACCTGCTGTTTCTCTCCACAGTGTTCTCTGCTACTCTCTGGTCTACATGGAGGGCCTAGCTTCTTTACATCTgtctggagggagagatagaggtcaCAGAATGAGGTTTCTAGTCTCAACACTCTCCAAGGCTTTTTAGAGGAAAATATTAACTTTTCAGGTCATGTCACAAGTGCCTTCTCCTCTGACATTGGCACTGCTAATTAACTCAGTGATGACACTTCTCCTTTCTCCCCACTAGATGGCACTGCTTGAGATAGGATCCCATCACACCATCTCTGTTGTATGTAAAAACGTGTTAGTCATTTGAAATCATTCTTCACAGACCTATGAGGGTATAATGTTAAAAGAATCAACACTGTTACCCATTACCAAACACAttgaaacagacacacactgtattaCAGCTAAACAGGACCGTGCTAAACTGAACCAGACATGACTGACCATAAGGGGATGTCATAGAATAGATGGTGTGTACTGTGGGGCCAAAGGTGACTGTAAATCAGGATTAGGTTAACATCTGAGTGGTATACTACGAAGTAAGCTACATCAactcagggttttctaaagctaacctgcttcacattccagctcaggcttcatccgtACTATGACAGTGGATATTGCTTGTCCGCCTGCCgctaactctagcaggcttgtaGCTGCGCTTCCACGTCACACATGGTTAGTCGAACAccaaactcttcattgagacagtGCTGAAAAATCAACCCGTGTGCGAGTCAGTGCCACATTTTCATTTGTGAAGATATGAAAATGAAAGAAAATTGATCTTACAGATTCAGCAGACTGGTGTGAAATAGGCTTTTAGAAGTGCTGTCTTTATTTGACTCCTTATCATTACTGCCGTCTTTGGTCTGCTTATCGCTCCTTATTCTATGTGTGAAACAGCTTGTTGTGTTGTGGCCATAGACATAATCCATAGAAGGGTTTTGTGACCTCTGACCCTGTCAatttgactgttaaactcatgggtacactagcaATGGCTGGCAGTTTGACTTGAATAAGGACTACCATCTATtgattatatgtctatggttggttGTGGCTGTCAGATTGACTTGAATAGGAACTACCATCTAtggattatatgtctatggttggttGTGGCTGTCATTTTGACTTGAATAGGAACTACCATCTATGGATTTTATGTCTATGGTTGGTTGTGGCTGTCAGATTGACTTGAATaggaactgccatctatggattaTAACTCTATGGTTGGTTGTGGCTGTCAGTTTGTCTTGCAAATGTCTAAATACAACAGTGTGAAAAACATACTGTTTGGTAAGCAAATTCTGTTGTTACTTATTTGTTTTCATTTAAAATTGGcaaaatcacagtaaggtactgaATTGtaacccagaaatgatttgatattaagataaaaacggctgcattagTCCTTTAAATGCTCTCAGAAGGAGGACATATCATTCTATACATACAGGCTACTATACTAATGAATAAATAAAGCTAGCCCCATGTTGGTGCATCAGTGTCCCTCTGCCGAAGAGATGTCTGTATGACATCTTACTATAACAACATTACATTGGCTAAGGGTAGCTG
>XM_021564168.2
TGTTTGGGCTCGCCACCAGCTGACAAAAACGAAAAGACAACGCGGAAGTAAAACTTCAAGCGGGTTTGTTTTGTTCTTGCCCACCATTCTTTCCTCGTGGACGAAGCCATACTAGCTGAATACCCAACTCTCCGTCGACAGAAACATGTCTAAACTACAATTGTTTCGTGTGTTTTTAAATGAGCGTTTAACAGCGGCAGCTGTGGAGATTTTCGGGGCAGTTGAAGAAACGGTAGCGGACTACCAGGAGGAGAATGATCGGCTACGGAGACTGCTGCGGGTCACACCGGAGATAAAACGATGCAGAATAGacTCCCTGCAACTCTCTGTCTCTGAGGAGGAGGTTATCCCTGATCAGTGGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGAACCCAGAGCTTCcacagattaaagaggaacaggaagaaATCAGGACCAGTCAGGACGAAGAGCAGCTTCAAGGGCTGGAGGCTGATATCATAGAGTTCAAATTCACTCCTTCCTGTGTGAAAAATGAATGTGATCAGGAGGACCCATTTCAGTCCTTGACTCTTCCCCAAACCCAGActgtggagaacagagagagtgatcCTAAACAAGTGGATCTCACACCTTTTGTTACTGTGACCCACTTTAAGGGTCTCAACATTCCCTGTGACCCTCCAGACAATCAAAACAATGCCTCCAGCCACGGCTCAGCCGTAAGCAGCGACCCAGTAGGACTTGACAGCAGCCCACGATTGAATCCCAGCCCATCATTGGATCCAAACCCATCGATGGGGGAACACTGTTTCAAACCCAGCACCACGTCTAGAAAAACTCACCACTGCCGTGACTGTGGTGAAATGTTTGCTCTGAAAGCTGACCTGAAGAGTCATGTGACTCTCGCCATGCAGAGACCCAGCGAATGCCACGTCTGCAGAAAACACTACAACTCCAGCTGTAAACTGACGGCCCATGTCCGACTCTGTCGCGGTAGGAAACCCTGCACCAGCCCTGTTTGTAGCAAGACCTTCAAACTCAAAGCAGACCTGTCCAAGCACATGAggattcacacaggggagaaatcatTTAGTTGTGGAGACTGTGGGAAGCGCTTCAATCGCAAGGGGAACCTTACTGATCATATTCctattcacacaggagagaaagcATTTAGCTGTGCTGACTGCGGAAAAAGATTCAGTCAGAAGGGGACCCTACGGAAGCATAgactgactcacacaggagagaaacaatTTATCTGTAgagactgtgggaaaagcttctATCAGAGAGGGGACCTAAGTAGGCATATacggactcacacaggagagaaactttTTATatgtggtgactgtgggaaaagcttcaatTTGAAGGGGAACCTGAAGAAGCATGAACTGACTCACACAGAAGATaaaccatttagctgtggtgactgtgggaaaagcttcaatcACAAGTCTAACTTACTGACGCATGTTAAAAACATCCACAAAGGAGGAAAACAGGAGGAAATCTTAAAGAACTGTTTAGTCACAAGATGAGAATAAAAGGGCAGGATGTGGACAATACTCTGAGTACACGTTCATGGACTCACATCTATTGGTTGGTGGAGGACGACACGATGATACCTCTCCTAGGGACCTGCTCTCCATGCTTCAGGATTAAAGTTCCCCTGGTCTCTGATCTATTCTATTGGTAACCTGCTGTTTCTCTCCACAGTGTTCTCTGCTACTCTCTGATATAGTTCCTTTACATCTgtctggagggagagatagaggtcaCAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTTCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTCCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACTCTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCTCCAAGAGGTCACAGAATGAGGTTCCTAGTCTCAACACTCCAAGGCTTTCTAGAGGAAAATACCTTTCTAGAAGAAAATACCTCTGACAGTGTCACAGCTAACCCGTTTGTAAAATGGATAAAATCTCCTGCCAAATGGCATATACAATGGAGTCTGAACTGATTGACGTCCTTGATAAATATGAGCAATCATGAccttataaaataaataattcaaatgctGAGCTATTTTGTATGCTTAAAAAAATTGGGaaagtatattattttatatGAATACAAATGCTCatagaaatatattttttatctcaAAAGAGTGGTGGTAAACATTGACACCCCTGAAGATTGTAATAAATAAAGTAGATGAAATACGACATCGAGCCTGTGACTCTATGAACTCTACAAAAGTTTGTTttggtttcagattattttgtgcccagtagaaatgaatggtaaataatgtattgtcattttggagtcagttTTATTGCAATAAGAATACCTTTTGGGGGAAAATTGTATAAAATAATACcttatagctcagtatttgaatgatttattttatacattatTGCTAATCTTTATCAAAGATAATTTGATAATTATTGTAGATCCCACTGTATTATGAACTCAGTGGCGACACTTCTGCTTTCCtaccactagatggtgctgtttAGGATGTCTCCCCACTAGATTGCGCTGTTTAAGATGTGACTGCAGTATCTCAGTATATCAAACCTGTTAGTCATTTCATCTTGTTTTCCAGAGACCTATGAGGGCATAAACCATTACTAAACACATTGTATTACAACCAAACAGGCTTATACTAAACTGAACCAGACATGACTGACCTGGACTGACCCTGGGAATGAGGGAAGATGTTGTGTACTGTAGGGTCAGAGGTGACTGTAAATCAGGATTAGGTTCACAACACCAGGAGAGTCCAAGTAAACAGATGTGTGTTATCCAGATTGACCACAATGTGGAGGAGTGGGACTTTCACTGTATGCATTAGTCTACTACAATAGAACGAGGTGTAGATGAGGTATCTGCTTAAATGTTCTCAGAAAGAGGACATCTTTTAATTCTATACATACAGGCTTCTAGACTAATGCATGTTGAGTAAATAAAACTAAACACATG

Function

NR:

description
zinc finger protein 184-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945211.1 False 3245 mRNA 0.44 3 71199520 71237895
XM_021564168.2 True 3748 mRNA 0.44 2 71232979 71237895

Neighbor

gene id symbol gene type direction distance location
LOC118936537 LOC106594938 coding downstream 615 71173970 ~ 71198905 (-)
LOC118938899 NA coding downstream 304709 70893229 ~ 70894811 (-)
LOC110516361 LOC106576597 coding downstream 339188 70791034 ~ 70860332 (-)
LOC110490694 LOC106576596 coding downstream 411784 70781695 ~ 70787736 (-)
LOC118938960 NA coding downstream 422091 70776831 ~ 70848012 (-)
LOC118938931 LOC106592567 coding upstream 10021 71247916 ~ 71263582 (-)
LOC118938900 NA coding upstream 32462 71270357 ~ 71271172 (-)
LOC110490714 LOC106593546 coding upstream 449985 71687880 ~ 71734443 (-)
LOC118938840 LOC106576579 coding upstream 603830 71841725 ~ 71923263 (-)
LOC110490787 LOC106593403 coding upstream 746833 71984728 ~ 72017048 (-)
G1323248 NA non-coding downstream 53378 71145605 ~ 71146142 (-)
G1323238 NA non-coding downstream 82972 71114434 ~ 71116548 (-)
G1323235 NA non-coding downstream 133220 71065825 ~ 71066300 (-)
G1323233 NA non-coding downstream 137336 71060260 ~ 71062184 (-)
G1323206 NA non-coding downstream 186017 71013303 ~ 71013503 (-)
G1323304 NA non-coding upstream 3173 71241068 ~ 71241369 (-)
G1323309 NA non-coding upstream 8107 71246002 ~ 71246204 (-)
G1323319 NA non-coding upstream 31556 71269451 ~ 71269683 (-)
G1323381 NA non-coding upstream 59858 71297753 ~ 71298254 (-)
G1323402 NA non-coding upstream 97585 71335480 ~ 71336102 (-)
G1323207 NA other downstream 159998 71025251 ~ 71039522 (-)
LOC110490645 LOC106576589 other downstream 654300 70543356 ~ 70547418 (-)
G1323036 NA other downstream 662381 70536452 ~ 70537139 (-)
G1322348 NA other downstream 1299817 69897748 ~ 69899703 (-)
G1321997 NA other downstream 1636480 69562310 ~ 69563040 (-)
LOC110500989 LOC106576674 other upstream 810069 72022817 ~ 72150996 (-)
LOC110490626 LOC106576575 other upstream 926738 72162661 ~ 72192809 (-)
G1324464 typh other upstream 1002653 72240548 ~ 72260352 (-)
G1324512 NA other upstream 1097465 72335360 ~ 72336984 (-)

Expression


Co-expression Network