XLOC_031649 (slc25a11)


Basic Information

Item Value
gene id XLOC_031649
gene name slc25a11
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 68076913 ~ 68093169 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00061294
GGCCACCGCTTGACGTGCGCAATCCAGGCGAGTCACCTTGCTGTCGACAACAGCGGCTGTAGATCAGCAGAGCGGCAGGATTGAAGGTGTCCTCCAGAAACCCGGACAGCACCGCAGCTATGGCAGCCGCAGCGGACACAGCCAAGCCCAAAACATCGCCCAAATCCATAAAGTTCCTCTTCGGCGGCTTGGCTGgGATGGGGGCGACGGTGTTTGTGCAGCCGCTGGATCTGGTGAAGAATCGGATGCAGTTGAGTGGTCAAGGCTCCAAAGCTCGCGAATACAAGACCAGCTTCCATGCTGTGGGCAGCATCCTTCGCAATGAGGGTGTTCGTGGCATCTACACCGGGCTTTCAGCAGGTCTTTTGAGACAGGCGACCTACACCACCACCCGCTTGGGCATCTACACGATCCTCTTCGAGCGCATGTCCAAAGCAGACGGCACACCGCCAAACTTCTTCATGAAGGCTCTGATCGGGATGACTGCCGGGGCCACGGGGGCGTTTGTTGGGACTCCTGCTGAAGTGGCGCTTATACGAATGACAGCTGATGGGAGGTTGCCTCCAGATCAAAGGAGGGGTTACACAAATGTCTTCAATGCTCTCGTCAGAATCACAAGAGAGGAAGGAGTCACCACGCTGTGGAGAGGATGCATACCGACCATGGCCAGAGCAGTAGTTGTGAATGCAGCTCAACTTGCTTCATATTCTCAGTCCAAACAAGCACTGTTGGACTCTGGGTATTTCCGAGATGATATCCTGTGTCACTTCTGTGCCAGTATGATCAGTGGACTGGTCACCACTGCCGCCTCCATGCCTGTAGACATTGTTAAGACCAGAATCCAGAACATGAGAATGATTGATGGGAAGCCGGAGTACAAGAATGGTTTGGATGTCCTGGTGAAGGTCATAAGGAATGAAGGATTCTTCAGTCTGTGGAAGGGTTTCACTCCATATTACGCTCGTCTCGGCCCGCACACGGTTCTCACCTTCATCTTCCTGGAGCAGATGAACAAGTTTTACAAGATCTATTTTCTCGACTCATAGATAACAGAGCACAGTACTTCCACATAGTCGCACTTTACAACAAGCTTTCATTAGCtaatgtacttactaacatgaactcaTAATGAACAATTAATCATATACTAATGCAATATTCAAAATCTAAATTCATTTCTGTTAGCGTTAGTTAACGAACAATAAGCAGCTTTATTTCAATTAATGTTAACgatgatgaataaatactgtaataaatgtgttgtttattgtttgttcatgttagtaaatgcattaactaacatttaataCAGTTgccattgtaaagtgtgacctgttTCTCCCCCACTTCCTTTCCTAGTATAGTTAAATTGGTTTGTTACAACCAATATATGACCGGACTTTGACCCCTTTGCTGTGGTGGTAACTGAGAAGACTATTCGGACtcttaaattacacacacacactgacacatgcacacacaggctGAGCAACTTAATGCTAAACTGAATTTGAATGCAGGCATTGATTGATTGTTTACACCAGTCGAAACcctgttttacttttaaattatatttatgtgATGACTGTATTTCCCCTCATATAAAGGTCAACATCTGTACTGACCTGTAAACAGACAGATGAGTGAATCATAAAGGATGTTTCTCT
>TCONS_00061295
GTTGCCTCCAGATCAAAGGAGGGGTTACACAAATGTCTTCAATGCTCTCGTCAGAATCACAAGAGAGGAAGGAGTCACCACGCTGTGGAGAGGATGCATACCGACCATGGCCAGAGCAGTAGTTGTGAATGCAGCTCAACTTGCTTCATATTCTCAGTCCAAACAAGCACTGTTGGACTCTGAATCCAGAACATGAGAATGATTGATGGGAAGCCGGAGTACAAGAATGGTTTGGATGTCCTGGTGAAGGTCATAAGGAATGAAGGATTCTTCAGTCTGTGGAAGGGTTTCACTCCATATTACGCTCGTCTCGGCCCGCACACGGTTCTCACCTTCATCTTCCTGGAGCAGATGAACAAGTTTTACAAGATCTATTTTCTCGACTCATAGATAACAGAGCACAGTACTTCCACATAGTCGCACTTTACAACAAGCTTTCATTAGCtaatgtacttactaacatgaactcaTAATGAACAATTAATCATATACTAATGCAATATTCAAAATCTAAATTCATTTCTGTTAGCGTTAGTTAACGAACAATAAGCAGCTTTATTTCAATTAATGTTAACgatgatgaataaatactgtaataaatgtgttgtttattgtttgttcatgttagtaaatgcattaactaacatttaataCAGTTgccattgtaaagtgtgacctgttTCTCCCCCACTTCCTTTCCTAGTATAGTTAAATTGGTTTGTTACAACCAATATATGACCGGACTTTGACCCCTTTGCTGTGGTGGTAACTGAGAAGACTATTCGGACtc

Function

symbol description
slc25a11 Predicted to enable C4-dicarboxylate transmembrane transporter activity; antiporter activity; and sulfur compound transmembrane transporter activity. Predicted to be involved in anion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in paraganglioma. Orthologous to human SLC25A11 (solute carrier family 25 member 11).

GO:

id name namespace
GO:0071422 succinate transmembrane transport biological_process
GO:0008272 sulfate transport biological_process
GO:0071423 malate transmembrane transport biological_process
GO:0015709 thiosulfate transport biological_process
GO:0035435 phosphate ion transmembrane transport biological_process
GO:0015729 oxaloacetate transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015297 antiporter activity molecular_function
GO:0015116 sulfate transmembrane transporter activity molecular_function
GO:0015117 thiosulfate transmembrane transporter activity molecular_function
GO:0015131 oxaloacetate transmembrane transporter activity molecular_function
GO:0015140 malate transmembrane transporter activity molecular_function
GO:0015141 succinate transmembrane transporter activity molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040625-79 Predicted to enable C4-dicarboxylate transmembrane transporter activity; antiporter activity; and sulfur compound transmembrane transporter activity. Predicted to be involved in anion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in paraganglioma. Orthologous to human SLC25A11 (solute carrier family 25 member 11).

Ensembl:

ensembl_id ENSDARG00000035741

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00061294 False 1667 mRNA 0.46 8 68076913 68093169
TCONS_00061295 True 790 nonsense_mediated_decay 0.40 4 68077134 68088347

Neighbor

gene id symbol gene type direction distance location
XLOC_031648 spag7 coding downstream 2321 68059924 ~ 68074592 (-)
XLOC_031647 rnf167 coding downstream 18745 68037629 ~ 68058168 (-)
XLOC_031646 wasf3a coding downstream 54282 68007172 ~ 68022631 (-)
XLOC_031645 gtf3aa coding downstream 83827 67980187 ~ 67993086 (-)
XLOC_031644 NA coding downstream 104571 67964507 ~ 67972342 (-)
XLOC_031650 CABZ01083943.1 coding upstream 112783 68205952 ~ 68214334 (-)
XLOC_031651 KIF1C coding upstream 135099 68228268 ~ 68259747 (-)
XLOC_031652 h1m coding upstream 233689 68326858 ~ 68333081 (-)
XLOC_031653 ephb4a coding upstream 315177 68408346 ~ 68495967 (-)
XLOC_031654 dlg4a coding upstream 436559 68529728 ~ 68641353 (-)
XLOC_031627 BX897741.1 non-coding downstream 912494 67161442 ~ 67164419 (-)
XLOC_031620 CU929288.1 non-coding downstream 1539579 66537217 ~ 66537334 (-)
XLOC_031616 NA non-coding downstream 1832781 66239915 ~ 66244132 (-)
XLOC_031612 NA non-coding downstream 2051969 66022664 ~ 66024944 (-)
XLOC_031655 LO017735.1 non-coding upstream 524789 68617958 ~ 68618089 (-)
XLOC_031656 NA non-coding upstream 528929 68622098 ~ 68668542 (-)
XLOC_031659 NA non-coding upstream 720754 68813923 ~ 68816110 (-)
XLOC_031662 NA non-coding upstream 797308 68890477 ~ 68893011 (-)

Expression


Co-expression Network