LOC110490706 (LOC106576521)


Basic Information

Item Value
gene id LOC110490706
gene name LOC106576521
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 71201261 ~ 71214069 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945212.1
gacctgtgcaatgttgtgcacaatttttcaaacatcatgacacttatttggagtctgtggcTCAAATGGTTTGAAAGCGGAATATTCGTTGAATATCCTAATTGAAACGGTATTATTATACCGTTTACCCTATTATTTAATGTAACTGTTTCCCCACATGTACTTATCTATTTCCATTATCATTGGTGTGGAGTAAAAACCCCCACCCACATGGGATCGCCACCCGCTGATAAAAACAGAGAAATAATGCGGAAGTAAAACTGGGAGcgggtttgttttgtttgttgccaCCATTCTTTCCTCGTGGACGAAGCCATACTAGCTGAATACCCAACTCTCAGTCCACTGAAACATGTCTAAACTTCAGTCGTTTCGTGTGTTTTTAAATGAGCGTTTAACTGCGGCAGCTGTGGAGATTTTCGGGGCAGTTGAAGAAACGGTAGCGGACTACCAGGAGGAGAATGATCGGTTACGGAGACTGCTGCGGATCACACCGGAGATAAAACTATGTAACGTAGactccctgcagctctctctcggtgtctctgaAGAGGAGGTTCTCCCTGATCAGCAGCACTGTGAGCAGGAGTGGAGCCCCACTCTGGGGCAAGAGAACCCAGAACTTCcacagattaaagaggaacaggaggaactcaGGACCAGTCTGGAGGCTGATATCATAGAGTTCAAATTCATTCCTTCCTGTGTGAAAAGTGAATGTGATAAGGACCCACTTCAGTCCTTGACTCTTCCCCAAACCCAGActgtggagaacagagagagtgacCCTAAACAAGTGGAACTCACACCTTTTGTTACTGTGACCCACCTAAAGGGTCTCTACATTCCCTGTGACCCTCAAGATAATCAAAACAATACCTCCAGCCAAAGCTCAACCTTAAGCAGCGACCCAGCGGCACTTGACAGCAGCCCATCGTTGGATCCCAACCCGCCATTGGATCCCAGCCCGCCATTGGATCCCAGCCCGCCATTGGATCCCAGCCCGCCATTGGATTCCAGCCCGCCATTGGATTCCAGTCCGTCATTGGATTCCAGTCCGTCATTGGATCCAAGCCCATCATTGGATCCAAACCAGTCAATGGTGGAACACTGTTTCAAACCCAGCACCATGTCTAGAAAAACTCACCACTGCCATGACTGTGGCGAAATGTTTGCAATGAAAGCTGACCTGCAGAGGCATGTGACTCTTTTAAAGAAGAGGCCCAGTGAATGTCGCTTCTGCAAAAGAAACTACAACTCCACCTGTAAACTAAAGGCCCATATCCGACTCTGTCACAGTGGGAAACCCTACACCTGCCCTGTTTGTGGCAAGACCTTCAAACTCAAAGGGAATCTGTCCAAGCACATAAGGATTCACACAGGAGTgggagagaaaccatttagctgtggaGACTGTGGGAAAAACTTCTATCAGAAGGGGGACTTAAGTAGGCATATacggactcacacaggagagaaattgTTTATCTGTGGTGAttgtgggaaaagcttcaatTTGAAAGGGAACCTTAGGAAGCATAaactgactcacacaggagagaaaccatttctCTGTGATGACTGTGGGAAAGGCTTCAGTCAGAAGGGGACCCTAAGGAAGCATAaactgactcacacaggagagaaaccatttagctgtgaagactgtgggaaaagcttcagtCAGAAGGGGACCCTAAAGAAGCATAAacggactcacacaggagagaaatcattTAGCTGTGgagactgtgggaaaagcttcagtCAGAAGGGGACCCTAAGGAAGCATAaactgactcacacaggagagaaatcattTAGCTGTGATGAccgtgggaggggagggggggtgaatgagccaagtggaagctggggatgatttgatggtggagatggtatgagggccagattgggaatgtaGTCTCTCTTGCCCTCTTCCTGTGTGTGTAAGCGCAAACTGTTTTAAATGCATTATTGTTTTTTCAGTCACATTTCAATAACATTATTTTATAATTGCTGTTCATAACTGCCTTCTCTGGTTTAGTGCTTGCTGTCCCATCAGTCCCAAGCAGCTGCCATTAGTCACGTGTTACAATGTGTTGTCTTTTAATTCAGTTCATGCAAGGAATGATCGTCCTAGATCAGCCTATTACTTAACACGTGGGAAAACAATGATATAATATTGTTACGTTATAATTTGTATGGAACTTGTAGTATAACCCCACCCACATCGGGGCGCTTTGTTATGTTTATGGACTAGCCACCCGCTGATAAAAACAGAATAAGACAATACGGAAGAAACTGTGAGCAGATTGTTTTGTTCTTGCCCACCATTCTTTCCTCGTGGATGTAAACATACTAGCTGAATACACAACTCTCCGTCGACAGAAACATGTCTAAACTTCAGTCGTTTCGTGTGTTTTTAAATGAGCGTTTAACCGCGGCAGCTGTGGAGATTTTCGAGGCACTTGAGCAAACAGTAGCGGAGTACCACGAGGAGAATGATCGACTACGGAGACTGCTGCGGATCACACCGGAAATACAACTACGTAGAATAGactccctgcagctctctgtctctgaggaGGAGGTTCTCCCTGATCAGCAGCACTGTGAGCAGGAGTGGAGCCCCAGTCTGGGGCAGGAGAACCCAGTGCTTCcacagattaaagaggaacaggaggaactcaggaccagtcaggaggaagagcagcttcaaGGGCTGGAGGCTGATTTCAAATTCACTCCTTCCTGTGTGAAAAGTGAATGTGATCAGGAGGACCCACTTCAGCCCTTCACTTCTCCCCAAACCCAGActgtggagaacagagagagtgatcCTAAACAAGTGGAACTCACACCTTTTGTTACTGTGACCCACCTTAAGGGCCTCTACATTCCCTGTGACCCTCCAGATAATCAGAACAATGCCTCCAGACAAATCTCAGCCGTAAGCAGCGACCCAGCAGCACTTGTGCAGCCGCCATTGGATCCAAATCCATCAGTGGTGGAACACTGTTTCAAACCCAGCACCACGTCTGGAAAAACATTTGCAGAGAGAACTGACCTGCAGAGGCATGTGACTCTCATCAGGAAGAGACTCAGTGAATGTCGCTTGTGCTTAAAACACTACAACTCCACCTGTAAACTGAAGGCCCATGTCTGCCTCTGTCACAGTGGGAAACCCAACACCTGCCCTGTTTGTGGCAAGACCTTCAATCTCAAAGTAGATCTGTCCAAGCACATGAggattcacacaggggagaaacgtTATTGTTgtggtgactgtgggaagagctttAGTCGCAAGTGGACCCTAGCCGCACATATACAGATTCACACAGGAGAAAAACCATTTAACTGTGCTGACTGCGGGAAAAGCTTCAATTTGAAGGGGAAACTTAGGAAACATACTCACACATGAGAGAAATAATTTAGCTGTGgagactgtgggaaaagcttcaatcAGAAGGGGGCCCTAATTAAGCATATAcgaactcacacaggagagaaattatTTAGCTGTGATGAATGTGGGAAAAGCTTCCATTTAAAGGGGAACCTAAAGAAGCATGaactgactcacacaggagagaaatcatttagctgtggtgactgtgggaaaagaTTCAAACGCAGGGAAAACTTAACTATGCATAtactgactcacacaggagagaaacaatTTAGCTGTGGTGACTGCGGGAAAAGCTTCTCCCAGAAGGGGAACCTTAGTAGGCACATACTGACTCACACAGGGGAGATGCCATTTAGCTGTGtagactgtgggaaaagcttcagcCAGAAGGGGACCCTAACGGTGCATATacggactcacacaggagagaaaccatttagctgtgtAGACTGTGGGGAAAGCTTCAGCCAGAAGGGGACCCTAACGGTGCATATacggactcacacaggagagaaaccatttagctgtgtAGACTGTGGGGAAAGCTTCAGCCAGAAGGGGACCCTAACGATGCATATacggactcacacaggagagaaataaaTAAGCTGTGATGTGTGCGGAGAAAGTGTCACTCGAAAGTCTAACTTACTGATCCATGTGGAAAACAGGATGAAAACTGAAAGAAAACTGAACATTTGTACAAAGACCTGTTTAGTCACAAGATGAGAATAAAAAGGCAGG
>TU1510597
AGAGGCCCAGTGAATGTCGCTTCTGCAAAAGAAACTACAACTCCACCTGTAAACTAAAGGCCCATATCCGACTCTGTCACAGTGGGAAACCCTACACCTGCCCTGTTTGTGGCAAGACCTTCAAACTCAAAGGGAATCTGTCCAAGCACATAAGGATTCACACAGGAGTgggagagaaaccatttagctgtggaGACTGTGGGAAAAACTTCTATCAGAAGGGGGACTTAAGTAGGCATATacggactcacacaggagagaaattgTTTATCTGTGGTGAttgtgggaaaagcttcaatTTGAAAGGGAACCTTAGGAAGCATAaactgactcacacaggagagaaaccatttctCTGTGATGACTGTGGGAAAGGCTTCAGTCAGAAGGGGACCCTAAGGAAGCATAaactgactcacacaggagagaaaccatttagctgtgaagactgtgggaaaagcttcagtCAGAAGGGGACCCTAAAGAAGCATAAacggactcacacaggagagaaatcattTAGCTGTGgagactgtgggaaaagcttcagtCAGAAGGGGACCCTAAGGAAGCATAaactgactcacacaggagagaaatcattTAGCTGTGATGAccgtgggaggggagggggggtgaatgagccaagtggaagctggggatgatttgatggtggagatggtatgagggccagattgggaatgtaGTCTCTCTTGCCCTCTTCCTGTGTGTGTAAGCGCAAACTGTTTTAAATGCATTATTGTTTTTTCAGTCACATTTCAATAACATTATTTTATAATTGCTGTTCATAACTGCCTTCTCTGGTTTAGTGCTTGCTGTCCCATCAGTCCCAAGCAGCTGCCATTAGTCACGTGTTACAATGTGTTGTCTTTTAATTCAGTTCATGCAAGGAATGATCGTCCTAGATCAGCCTATTACTTAACACGTGGGAAAACAATGATATAATATTGTTACGTTATAATTTGTATGGAACTTGTAGTATAACCCCACCCACATCGGGGCGCTTTGTTATGTTTATGGACTAGCCACCCGCTGATAAAAACAGAATAAGACAATACGGAAGAAACTGTGAGCAGATTGTTTTGTTCTTGCCCACCATTCTTTCCTCGTGGATGTAAACATACTAGCTGAATACACAACTCTCCGTCGACAGAAACATGTCTAAACTTCAGTCGTTTCGTGTGTTTTTAAATGAGCGTTTAACCGCGGCAGCTGTGGAGATTTTCGAGGCACTTGAGCAAACAGTAGCGGAGTACCACGAGGAGAATGATCGACTACGGAGACTGCTGCGGATCACACCGGAAATACAACTACGTAGAATAGGTTCGTGTATAGATATACTGATAGCTACAGTTCTACTCAATAAATATACTGTTTGGGATTTCAG

Function

NR:

description
endothelial zinc finger protein induced by tumor necrosis factor alpha-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945212.1 False 4165 mRNA 0.46 4 71201261 71213281
TU1510597 True 1408 lncRNA 0.44 2 71207571 71214069

Neighbor

gene id symbol gene type direction distance location
LOC118936537 LOC106594938 coding downstream 2356 71173970 ~ 71198905 (-)
LOC118938899 NA coding downstream 306450 70893229 ~ 70894811 (-)
LOC110516361 LOC106576597 coding downstream 340929 70791034 ~ 70860332 (-)
LOC110490694 LOC106576596 coding downstream 413525 70781695 ~ 70787736 (-)
LOC118938960 NA coding downstream 423832 70776831 ~ 70848012 (-)
LOC110490707 LOC106576520 coding upstream 15587 71228868 ~ 71232129 (-)
LOC118938931 LOC106592567 coding upstream 34635 71247916 ~ 71263582 (-)
LOC118938900 NA coding upstream 57076 71270357 ~ 71271172 (-)
LOC110490714 LOC106593546 coding upstream 474599 71687880 ~ 71734443 (-)
LOC118938840 LOC106576579 coding upstream 628444 71841725 ~ 71923263 (-)
G1323248 NA non-coding downstream 55119 71145605 ~ 71146142 (-)
G1323238 NA non-coding downstream 84713 71114434 ~ 71116548 (-)
G1323235 NA non-coding downstream 134961 71065825 ~ 71066300 (-)
G1323233 NA non-coding downstream 139077 71060260 ~ 71062184 (-)
G1323206 NA non-coding downstream 187758 71013303 ~ 71013503 (-)
G1323298 NA non-coding upstream 2771 71216052 ~ 71221279 (-)
G1323304 NA non-coding upstream 27787 71241068 ~ 71241369 (-)
G1323309 NA non-coding upstream 32721 71246002 ~ 71246204 (-)
G1323319 NA non-coding upstream 56170 71269451 ~ 71269683 (-)
G1323381 NA non-coding upstream 84472 71297753 ~ 71298254 (-)
G1323207 NA other downstream 161739 71025251 ~ 71039522 (-)
LOC110490645 LOC106576589 other downstream 656041 70543356 ~ 70547418 (-)
G1323036 NA other downstream 664122 70536452 ~ 70537139 (-)
G1322348 NA other downstream 1301558 69897748 ~ 69899703 (-)
G1321997 NA other downstream 1638221 69562310 ~ 69563040 (-)
LOC110500989 LOC106576674 other upstream 834683 72022817 ~ 72150996 (-)
LOC110490626 LOC106576575 other upstream 951352 72162661 ~ 72192809 (-)
G1324464 typh other upstream 1027267 72240548 ~ 72260352 (-)
G1324512 NA other upstream 1122079 72335360 ~ 72336984 (-)
LOC118938839 NA coding downstream 5582 71201248 ~ 71201989 (-)

Expression


Co-expression Network