LOC110490794 (LOC106598106)


Basic Information

Item Value
gene id LOC110490794
gene name LOC106598106
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72200967 ~ 72203946 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945253.1
CTTTTATCAATCATATTCAACATGGATTCAATTGGAAagagtctagtttaggggtggaTGTCGTCTATTCCTTTTGTATTCTGTGGAAGAAAGGCTTTTCATTAGGCCCATGTGGCTGATGGTCACAAAGTACTGGTCTATGTCTACAATTAATATTGACAGAAAATGGAAATGAGGGACATTGAAGGAAATGAATGTGCACTCACGTGTGAAGCCAGGGGAGGTGTTCATATTGAAGCCTAGATGTTCATTACACTCTGGGAATGCGCACTGCGCACCTACCTATACAGCACATTCTGATTTCATCCGTGCATCCAGAGCCATATTTAAACAGGCCTCCAGCTCTGGTGCACCTGTCGTTGCTGCCCATCTTTTCTGGGACGGTGATGGCCCGTACAACATGTCATAGACAGACGATGCTTGCAGGGTTACCCAACCACATAGCGCCGGGCGGCCAAACTGACGTTTCTTGAAGGTATGTAGCTATCAATGGAGCAGCAAATTCAGGGTGAGTCGTCAGGCAAATACGACGCTACTACCAGCTACCAGCACTTGTTGCTGCTGCGCAGAACTACTGCGCATCATCGGGCGAGAGATAGTGGCCGAATTGCCAATAGGAAAGTATTGGACCTAATTTTCTGAACATAATTAACAATGGAAAAAAAATGGTAACCAAAAAATCTTGTAAGGGACAATGAGTTTACAACTCAATTATAGTGGCAATGGCAGTTCGGAGCGGGAGGACGCGGGAGGAACTGATGAGACAGGTGAACACGACTTTGCGCTTATAAAAGCTGGGGTTTTGGGATTGATTTTTGTCTTAGCCACATGTGGGAATTTGTGCCTTCTGCATGCACTTTGGAGGAAGCGCAAGATGAATACAAGGACCCAACTGTTCCTTCTGCACCTGTGTTTTGCGGACCTAGTGGTCGCTTTCTTCCAAGTCCTACCGCAGTTCTGCATGGAGATTACGCACCGGTTCCGGGGCTCAGATTTCGTCTGTAGGTCGGTGAAATATCTTCAGGTGGTTGGGATGTTCGCCTCCACATACATGATAGTGGCCATGACCATAGATCGGTACCATGCGGTCTGCAAACCCATGGTGTCGTTCTTGAAGGGTTCTTTTAAGAGGTACGTCGCCATAGGCGCAGCGTGGCTGGTCTCTCTGGCTTTCAGCACTCCGCAACTCTTCATCTTCTCTCTCCAAGAACTAGAGGACAACCTGTATGATTGTTGGGCGACATTTATCGAACCTTGGGGTTCTAAAATATACATCAGCTGGATTACTTTATCAGTGTTTGTTCTCCCGGTTATCATCTTGCTGTACTGCCAGATTAAAATATGCACGGGGATATACTTTAACATGAAGAGAAAGGCGCTCCAGGCTTCCACGAGCGACAGGCGCACGGGCACCAAAGGGGTCTCGAGCGCGATGTTGAAGACGGTCAAAATGACATTCGTCATCATTATGGTCTACTCGATATGCTGGAGCCCCTTCTTTGTGGTCCAGTTGTGGTCTGCATGGAGTCCCAGTACAGCGCCCACAAATGgtccacTGTTTGTCATCATCATGCTGCTTGCCAGTCTAAACAGCTGTACCAACCCCTGGATCTATCTTTACTACAGCTAGGAGACACTATGTTGGACTAGCTCTGGCCCAGGGCGCTACTTTCAGCTTCACAGAAGGCTCAGCATCAGCAAGCCACACATACATAACACCATGGACCAGAGCTATTGATGGACCATGTGGACAATATGGGAACTCCTCCTACTCCACTgcttcaccttgtactgtatgtaGCATTTCTTTGATGTCATTAAGGACCCATGGTTTAGACACATGGAAATATTTGTAAATATCCTCGTTGATTCAACATCAATATTGGTATGTCAAGCCGACCATTTTAGCTCTCAGCAGTAAGCAAATGTAATGTATATTCTGTCAAGCTAATATTCTATCAGAGGTGCAGGAACTggagcagtagaacatttgaggtggcGGGACTCAGTTCCGGTGAGCTCCTGTCCTAATCAATCACTGATTATCTGGGATGACTGGCCACCAGAAAAACTATTGTGAGGAAGGATATGGGCATCGGTGAACAACGAATGGTTGCTTTGTGAGTATAATGTATATTCTTATCACGATCTGGTCCATTTATTTATTGATGTGTTTGAGCTCTGACGTgt

Function

NR:

description
PREDICTED: arg8-vasotocin receptor-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005000 vasopressin receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945253.1 True 2190 mRNA 0.46 2 72200967 72203946

Neighbor

gene id symbol gene type direction distance location
LOC118938843 NA coding upstream 146843 72053760 ~ 72054124 (+)
LOC118938842 NA coding upstream 181667 72018717 ~ 72019300 (+)
LOC118938841 NA coding upstream 224818 71973676 ~ 71976465 (+)
LOC110490816 LOC106609794 coding upstream 422264 71764771 ~ 71778703 (+)
LOC110490815 LOC106576513 coding upstream 437524 71738171 ~ 71763443 (+)
si:ch73-139j3.4 NA coding downstream 25673 72229619 ~ 72236599 (+)
LOC118938845 NA coding downstream 32984 72236930 ~ 72238063 (+)
LOC110516855 typh coding downstream 34290 72238236 ~ 72241900 (+)
LOC118938844 typh coding downstream 47957 72251903 ~ 72256569 (+)
LOC110490623 LOC106597683 coding downstream 83218 72287164 ~ 72370434 (+)
G1323965 NA non-coding upstream 1509 72199243 ~ 72199458 (+)
G1323963 NA non-coding upstream 5956 72194653 ~ 72195011 (+)
G1323951 NA non-coding upstream 28412 72168044 ~ 72172555 (+)
G1323952 NA non-coding upstream 30338 72168476 ~ 72170629 (+)
G1323949 NA non-coding upstream 36533 72163751 ~ 72164434 (+)
G1323981 NA non-coding downstream 67575 72271521 ~ 72271892 (+)
G1323992 NA non-coding downstream 77212 72281158 ~ 72281463 (+)
G1323993 NA non-coding downstream 77574 72281520 ~ 72284845 (+)
G1324000 NA non-coding downstream 106904 72310850 ~ 72311427 (+)
G1323962 NA other upstream 9804 72190423 ~ 72191163 (+)
G1322763 NA other upstream 1263822 70936225 ~ 70937145 (+)
G1322725 NA other upstream 1353023 70843945 ~ 70847944 (+)
G1322161 NA other upstream 2297309 69900944 ~ 69903658 (+)
G1322119 NA other upstream 2401105 69798196 ~ 69799862 (+)
LOC110531894 LOC106598741 other downstream 252271 72416050 ~ 72481441 (+)
LOC110490361 LOC106609821 other downstream 538267 72742193 ~ 72850175 (+)
G1324156 LOC106576365 other downstream 649620 72853566 ~ 72856022 (+)
G1324195 NA other downstream 656874 72860820 ~ 72865809 (+)
G1324240 NA other downstream 701764 72905710 ~ 72906089 (+)

Expression


Co-expression Network