LOC118938844 (typh)


Basic Information

Item Value
gene id LOC118938844
gene name typh
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72251903 ~ 72256569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945258.1
GCAGCGTTCCGGTACAGCCCTGATttgaagagggagtggttacagCATTCATTGGACAACACCCAtttcaTTTTTCTGGCAAGTTCAGCTGACTAGTTCAGCCAACAGAAACGCCCTGGTCAAACAGACTTTCCAAGACAACACTAGAACTCTTCTAAGTCAAGCTGTGTGTCAgtcagctgtgtgtcagtccgctgtgtgtcagtccgctgtgtgtcagtccgctgTGTGCCAGtccgctgtgtgtcagtccgctgTGTGTCAGTCATCTGTGTGTCAGTCCGCTGTGTGTCAGTGAGCTGCAGGGATGGCGCACCACGAGCAGAGCAAAGCCACTTTCCCAGAACACATCCGCAAGAAACGGAACGGTGAACAGCTGAGTGCTGGGGAGATCCGAGACTTCGTACAGGGTGTCAAGGACAAGACCATCCAAGAGAGCCAgattggagcCATGCTGATGGCAATCTGGCTGAAGGGAATGGTAGCAGAGGAGACTCTCGCACTGACGAAGGAGATGATGATGTCAGGGGAAGTGATGTCATGGCCGGCAGAGTGGGAGGGGCTAATGGTGGATAAACACTCGACAGGTGGAGTGGGGGACAAGATCAGCCTGGTGCTGGCTCCTGCTCTGGCTGCCTGCGGCTGCAAGGTACCCATGATAAGTGGCAGAGGTCTGGCACACACAGGCGGCACGCTCGACAAACTGGAGTCCATCCCTGGCTTTAACGTCTATCAGTCAGTACAACagCTGCATCAAATCCTGGAGGAGGTTGGCTGTTGCATTGTAGGACAGACAGATAACCTGGTGCCTGCTGACAAGGTCATGTACGCTCTGAGAGACGTTACGTCTACAGTCGACAGCCTCCCACTCATCACAGgCTCTATCATCTCTAAGAAGGGTGCTGAGTCTCTGAGTGCCTTGGTTCTGGATGTGAAGTTTGGGAATGCAGCTCTCTACAAAGACCTGGGCAGTGCCAAGTCACTGGCCCAGTCCATGGTGACAGTTGGGAACAGTTTGGGGATCCGTACCGGGGCGGTGCTTAGTCGTATGAACTGTCCTATTGGTCGCTGTGTGGGGAACACTCTGGAAGTGATGGAGTCCCTGGAGTGTCTAAAGGGGAGGGGCCCAGACGACATACTGGAGCTGGTCACAAGTCTGGgtgggctGCTGTTGTGGATGATTGGCCGTGCAGGGAGCCTGGAGGAGGGTAAAAAGGTGATCTCTACAACCCTGCAGAATGGTGCAGCCCTGGAAAAGTTCCAGAACATGATGATTGGTCAGGGAGTAGCCAGTCAGATCGCTGCATCACTCTGTTCAACCAACGCAGACTACTACAGCATCCTGAGACGGGCACACTACCAGACAGAACTGGAGACACAGGGCCATgGGACAGTACTGGACATAGACGGCATGGTCATTGCTCAGGTGCTGCACAGGTTGGGGGCGGGACGTTCGAAGGCCGGAGACCCTGTCAATCACAGTGTGGGGGCGGAGCTTCTGGTGTCTTTGGGACAGAAGGTGGAGAAAGGGCAGCCATGGCTGCGTGTCCACTACGAGACTCCGGCGCTGAGTGCAGAGCAGAGACTCGGTCTACAAGGGGCGCTGACACTGGGGCCCGTCGACCAGCTACACACACAGCCACTAGTGGCAGAAATCATACTGCCATAGTGACACAAATCTACTCTATGTTAAAGCTTGATTTGGAGATGACCTGCCTTTGGGAATctcagtgttttatttttaaagaaTGTATAGTTCAGAACTAAA
>XM_036945257.1
AAATACTGTAGATATGCTACCAACAAATTTAACTCAAAGCTAGAAGCATCAGAATGCCTAGAAAGGTAGTTCTAAGcttaaatatgactgggcaaAGTGCCAAGAATAGGAGAGCCATCTTTTTCCATAGTACATTAGAACAGTGCAAACGTGGACAATAACGGTCCAGACATAGATGAGGGCAATAGTGCAAcatgtccactagatggcagcaaatGGACCAATCACAACCCGACAGGAAAGGGGAGAAACCCATGACATGGGTTgttgactcagagagagaaagacaatagttgaacagttttgaacaaatgaaTTCCTTCCAAAATGAAgtagaagcaagagagaaatagagcaagagagagagattattattgttattattattatatatattttttcagtttcaTTTTTCTGGCAAGTTCAGCTGACTAGTTCAGCCAACAGAAACGCCCTGGTCAAACAGACTTTCCAAGACAACACTAGAACTCTTCTAAGTCAAGctgtgtgtcagtccgctgtgtgtcagtccgctgtgtgtcagtccgctgTGTGCCAGtccgctgtgtgtcagtccgctgTGTGTCAGTCATCTGTGTGTCAGTCCGCTGTGTGTCAGTGAGCTGCAGGGATGGCGCACCACGAGCAGAGCAAAGCCACTTTCCCAGAACACATCCGCAAGAAACGGAACGGTGAACAGCTGAGTGCTGGGGAGATCCGAGACTTCGTACAGGGTGTCAAGGACAAGACCATCCAAGAGAGCCAgattggagcCATGCTGATGGCAATCTGGCTGAAGGGAATGGTAGCAGAGGAGACTCTCGCACTGACGAAGGAGATGATGATGTCAGGGGAAGTGATGTCATGGCCGGCAGAGTGGGAGGGGCTAATGGTGGATAAACACTCGACAGGTGGAGTGGGGGACAAGATCAGCCTGGTGCTGGCTCCTGCTCTGGCTGCCTGCGGCTGCAAGGTACCCATGATAAGTGGCAGAGGTCTGGCACACACAGGCGGCACGCTCGACAAACTGGAGTCCATCCCTGGCTTTAACGTCTATCAGTCAGTACAACagCTGCATCAAATCCTGGAGGAGGTTGGCTGTTGCATTGTAGGACAGACAGATAACCTGGTGCCTGCTGACAAGGTCATGTACGCTCTGAGAGACGTTACGTCTACAGTCGACAGCCTCCCACTCATCACAGgCTCTATCATCTCTAAGAAGGGTGCTGAGTCTCTGAGTGCCTTGGTTCTGGATGTGAAGTTTGGGAATGCAGCTCTCTACAAAGACCTGGGCAGTGCCAAGTCACTGGCCCAGTCCATGGTGACAGTTGGGAACAGTTTGGGGATCCGTACCGGGGCGGTGCTTAGTCGTATGAACTGTCCTATTGGTCGCTGTGTGGGGAACACTCTGGAAGTGATGGAGTCCCTGGAGTGTCTAAAGGGGAGGGGCCCAGACGACATACTGGAGCTGGTCACAAGTCTGGgtgggctGCTGTTGTGGATGATTGGCCGTGCAGGGAGCCTGGAGGAGGGTAAAAAGGTGATCTCTACAACCCTGCAGAATGGTGCAGCCCTGGAAAAGTTCCAGAACATGATGATTGGTCAGGGAGTAGCCAGTCAGATCGCTGCATCACTCTGTTCAACCAACGCAGACTACTACAGCATCCTGAGACGGGCACACTACCAGACAGAACTGGAGACACAGGGCCATgGGACAGTACTGGACATAGACGGCATGGTCATTGCTCAGGTGCTGCACAGGTTGGGGGCGGGACGTTCGAAGGCCGGAGACCCTGTCAATCACAGTGTGGGGGCGGAGCTTCTGGTGTCTTTGGGACAGAAGGTGGAGAAAGGGCAGCCATGGCTGCGTGTCCACTACGAGACTCCGGCGCTGAGTGCAGAGCAGAGACTCGGTCTACAAGGGGCGCTGACACTGGGGCCCGTCGACCAGCTACACACACAGCCACTAGTGGCAGAAATCATACTGCCATAGTGACACAAATCTACTCTATGTTAAAGCTTGATTTGGAGATGACCTGCCTTTGGGAATctcagtgttttatttttaaagaaTGTATAGTTCAGAACTAAA

Function

NR:

description
thymidine phosphorylase-like

GO:

id name namespace
GO:0006206 pyrimidine nucleobase metabolic process biological_process
GO:0006213 pyrimidine nucleoside metabolic process biological_process
GO:0016154 pyrimidine-nucleoside phosphorylase activity molecular_function
GO:0004645 1,4-alpha-oligoglucan phosphorylase activity molecular_function

KEGG:

id description
K00758 deoA, TYMP; thymidine phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945258.1 False 1768 mRNA 0.54 12 72251903 72256569
XM_036945257.1 True 2092 mRNA 0.51 10 72252288 72256569

Neighbor

gene id symbol gene type direction distance location
LOC110516855 typh coding upstream 10003 72238236 ~ 72241900 (+)
LOC118938845 NA coding upstream 13840 72236930 ~ 72238063 (+)
si:ch73-139j3.4 NA coding upstream 15304 72229619 ~ 72236599 (+)
LOC110490794 LOC106598106 coding upstream 47957 72200967 ~ 72203946 (+)
LOC118938843 NA coding upstream 197779 72053760 ~ 72054124 (+)
LOC110490623 LOC106597683 coding downstream 30595 72287164 ~ 72370434 (+)
LOC118938846 tsn8 coding downstream 66417 72322986 ~ 72335863 (+)
LOC110516399 LOC106592662 coding downstream 83512 72340081 ~ 72346916 (+)
LOC110518729 LOC106599346 coding downstream 125302 72381871 ~ 72404638 (+)
LOC110531894 LOC106598741 coding downstream 159481 72416050 ~ 72481441 (+)
G1323965 NA non-coding upstream 52445 72199243 ~ 72199458 (+)
G1323963 NA non-coding upstream 56892 72194653 ~ 72195011 (+)
G1323951 NA non-coding upstream 79348 72168044 ~ 72172555 (+)
G1323952 NA non-coding upstream 81274 72168476 ~ 72170629 (+)
G1323949 NA non-coding upstream 87469 72163751 ~ 72164434 (+)
G1323981 NA non-coding downstream 14952 72271521 ~ 72271892 (+)
G1323992 NA non-coding downstream 24589 72281158 ~ 72281463 (+)
G1323993 NA non-coding downstream 24951 72281520 ~ 72284845 (+)
G1324000 NA non-coding downstream 54281 72310850 ~ 72311427 (+)
G1323962 NA other upstream 60740 72190423 ~ 72191163 (+)
G1322763 NA other upstream 1314758 70936225 ~ 70937145 (+)
G1322725 NA other upstream 1403959 70843945 ~ 70847944 (+)
G1322161 NA other upstream 2348245 69900944 ~ 69903658 (+)
G1322119 NA other upstream 2452041 69798196 ~ 69799862 (+)
LOC110490361 LOC106609821 other downstream 485644 72742193 ~ 72850175 (+)
G1324156 LOC106576365 other downstream 596997 72853566 ~ 72856022 (+)
G1324195 NA other downstream 604251 72860820 ~ 72865809 (+)
G1324240 NA other downstream 649141 72905710 ~ 72906089 (+)

Expression


Co-expression Network