LOC110499807 (lsm8)


Basic Information

Item Value
gene id LOC110499807
gene name lsm8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72265690 ~ 72269495 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945261.1
CAAGGTCGAACAAGCCTATTATCGCTAGAAAGGGCGGTCTGGTAAACTCATGGATCGGTAGGGCGACACCACTGAGGTATAAAGAACGGCGCGACACTCATTTTCTGTGGATTCGGCGCCATCTTCTGGACACCAAAATCATTAGTGGGTCTGCAATCATCTAGTCTGGTCTGATGCTGTTTCCGGTTTGTGACTGCACGCCGATTTTGTGATCTACGGTGGAGCTACGTTTTGTGTTTTCCAAATAAACCCGGCGGATTTGAACGAGTCTTTTGTTGTCACCATGTCGACTGCCCTCGAGAGCTACATCAACCGTACAGTGGCCATCGTTACATCTGACGGACGGATGATAGTGggcacCCTGAAGGGCTTTGACCAGACCATCAACCTGATTCTGGATGAGAGTCATGAGCGTGTGTTCAGTTCCTCTCAGGGCGTGGAGCAGGTGGTCCTGGGACTATACATCGTCAGAGGAGACAACGTAGCTGTGATTGGGGAGATTGATGAGGACACAGATTCTTCGCTGGACCTGGGGAACATCCGCGCTGAACCCCTTAACTCTATAGTCCACTGACCTCTCACCCTGACCCCTCAACTCGGATGTGCTGACCCCTACACCTGAGtgattgtgtgtgagagagagtgtgaaagagaaagcTAGAAATAGAGTAGTGTTTCAATTTTCACCACCTACTCAGCAATAGCTGATGTCCCTGTCTGTAGAGCACAGTTTATCTCCCCCGTGAAGGACCCAGGGGACTAATAATAGGATGTTGATGAATGTGGTGATATTTTTTAATAAAGTGTTTCGTTTAACATGAA

Function

symbol description
lsm8 Predicted to enable RNA binding activity. Acts upstream of or within RNA splicing; T cell differentiation; and mRNA processing. Predicted to be located in nucleus. Predicted to be part of U4/U6 x U5 tri-snRNP complex; U6 snRNP; and precatalytic spliceosome. Is expressed in muscle. Orthologous to human LSM8 (LSM8 homolog, U6 small nuclear RNA associated).

NR:

description
LSM8 homolog, U6 small nuclear RNA associated

GO: NA

KEGG:

id description
K12627 LSM8; U6 snRNA-associated Sm-like protein LSm8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945261.1 True 822 mRNA 0.49 4 72265690 72269495

Neighbor

gene id symbol gene type direction distance location
LOC110499794 LOC106609728 coding downstream 40565 72210976 ~ 72225125 (-)
LOC110490626 LOC106576575 coding downstream 72881 72162661 ~ 72192809 (-)
LOC110500989 LOC106576674 coding downstream 114694 72022817 ~ 72150996 (-)
LOC110490787 LOC106593403 coding downstream 248642 71984728 ~ 72017048 (-)
LOC118938840 LOC106576579 coding downstream 342427 71841725 ~ 71923263 (-)
LOC110490622 LOC106595912 coding upstream 1683 72271178 ~ 72281002 (-)
LOC110490625 LOC106596128 coding upstream 37371 72306866 ~ 72315261 (-)
fgl2a fgl2 coding upstream 152074 72421569 ~ 72426957 (-)
LOC110531900 LOC106576463 coding upstream 212444 72481939 ~ 72493287 (-)
LOC110531910 gsap coding upstream 230919 72500414 ~ 72533138 (-)
G1324502 NA non-coding downstream 3214 72261990 ~ 72262476 (-)
G1324498 NA non-coding downstream 4399 72236065 ~ 72261291 (-)
G1324499 NA non-coding downstream 4858 72235607 ~ 72260832 (-)
G1324464 typh non-coding downstream 5338 72240548 ~ 72260352 (-)
G1324465 typh non-coding downstream 9818 72240441 ~ 72255872 (-)
G1324541 LOC106592662 non-coding upstream 76536 72346031 ~ 72347252 (-)
G1324550 NA non-coding upstream 92718 72362213 ~ 72362977 (-)
G1324558 NA non-coding upstream 112474 72381969 ~ 72382259 (-)
G1324560 NA non-coding upstream 119795 72389290 ~ 72389526 (-)
G1324561 LOC106599346 non-coding upstream 120624 72390119 ~ 72391119 (-)
G1323296 LOC106609674 other downstream 1027844 71202500 ~ 71237846 (-)
G1324512 NA other upstream 65865 72335360 ~ 72336984 (-)
G1324569 NA other upstream 137926 72407421 ~ 72407769 (-)
G1324604 NA other upstream 210910 72480405 ~ 72481169 (-)

Expression


Co-expression Network