LOC110490622 (LOC106595912)


Basic Information

Item Value
gene id LOC110490622
gene name LOC106595912
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72271178 ~ 72281002 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945262.1
TGCGTGCTGTTGACGTGGAAGAGACACAGAAGAAAGATGGCGGCGCCCTCTGCAGAGCAGCAAAACGGCCAAAGTGATGAATCTGATCTACAAAGCCCTATATCGACAAATTATGAAGACTCCGAAACAGAATCGGGGGAGGGAGCACTCCCCGACTACGTTGTCGAATTGATAGAGAAAGAAATCGGAGTGGATCTGAAGTCGCTGAAGAAAGTTAGCGCGCTCCTGGAGAAACTGACAGCGGAAAACAAGTTGCTGGAGGAGCAGGTTCTGACGGTGTCCAGTTCGGTGCCGCTGCGGGTGTCAGCAGCGCTGTCTGCTGCCGAGGAGTCCCGTGTGTCTCTGGAAGGTTTGCTCCAGCGGGAGAGGGTCCTGTCCAACACCCTGATACAGCACCTGCAGGGCGCCCAGCCCTGGGCAGACAGCCTGGGACGGACCCTGGAACAGCTGgacaacacagagaaacacatgAAATACCTGCAGTGTCTGTCACGCATTGAAGAACTCAGTGACAGCATCCAGCAGTGTCTGATCACCAACAGTATATGGGAGGCAGTGGTGGCGGTGGGCAGCATGGCCAGTCTAGATGTGGGCCTAAAGCAGTCTGGCTGCTCTCATCTCCAGGCCTTCCTCAGAGAGACACTATGCTTCTGGCACAAGATCATTAAGGACAGACTGGCTGGTGATTTTGAGGAGTTGCTGATCCAGCTTCACTGGCCGTTCAtctctcctcccacccagtctctctccccccctgccaACGCTCAGGAGCTCCACAGCCAGCTGGAGCTTCTGGTGGCCCAGCTCCTGTCTCTACAGACCTCTGATGATCTCATATCAGAGAAGCCAACCTCTGTGTCCCGTGTAGGGTTGCCCCCGACGACacccctgtctcttcctgtccaGATCATGTTGCTTCCTCTGAGCAAGAGGTTTCGATACCACTTCACTGGAAACCGTCAGACCAATTCACTCAACAAGCCTGAGTGGTTCCTGACCCAGGTCCTGATGTGGATGGGTAACAGCTCCAACTTCATGGAGGAGAAGATCCAGCCCATTCTGGACAGAAATGGAGCTAACGTCAACGCCAAGGTGGAGCTGTGTCGCGGTCTACTCACCCTGGCCCAGGAGAAGCTAGCGTTGGATGCTCCACGGCTGCTCTACGACGACGCTCTCTTCTGCCACCTGGTGGATGAGATCCTGCAGTTTGAGAGGGAGCTGCGCACCACCCACTCCTACCCCAGCACCCTGCCCGGAGTGCTGCATGTACTGCTGGAGGAGGTCGTGCTGCAGAAGTGGCTCACTGTGGAGAggaagatgGCGATAGAGAAGGTGGATGCCATGCTGTCTGCTGAGGGGGCTTGGAGCTCCCAGTACAAAGACATCAGTGACATGGATGAACTCAAGGCTCCAGACTGCGCTGAGACCTTCATGACCTTACTGCTGGTCATCACTGACCGCTACCGTGCCCTCCCCTGCCCTCGTGCCCAGCTGCGTTTCCTGGCGCTACAGAGAGAGCTGGTGGACGACTTCCGTATCCGCCTCACCCAGGTGATGAAGGAAGAGTCCCGTAACCCGCTGGGCGCTAGATACTGTGCTATTCTCAACGCTGCCAACTACATCTCCACCGTGCTGGGGGACTGGGGAGACAACGTGTTCTTCCTGCAGCTGCAGCAGTCAGCTGTggccctgggggaggaggagCTGTTGGGGCCGCTGGGGGTCACTGAGTCCGGCCGTCTGGCCTCTCTGGAGGGGTCTCTGTTTGAGGGGCTCCTGGGGCTgctggagaggctgagaggagacatGCTGGGCAGGTTACTGGAGGCTGTCATGAGGGACGTACAGAAGAAGGCTCAGCCCTACTGCAGGGACAGGTGGTTGTCTCTGCCGTCCCAGTGTGACCAGGCCACCATGTCCCTGTCCAGTTTAGCCTGTCCTCTGATGCTCTGTCTCAGGGACCACCTGCTCCAGCTGCAGCAGATGCTGTGTCTGCCTCTCTTCCAGACGGGCTGGCAGGACCTGGCTGAGAGGCTGGACCTCTTCCTCTACCAGAATGTGATTCTGTATAACCACTTCAACGAGGGGGGTGCAGCCCAGCTCCAATTCGACATGACAAGGAACCTCTTCCCTCTGTTTGGACACTACTGCAAGAGGCCTGAGAACTTCTTCAAACATGTGAAGGAGGCCTGCGTCATCCTGTGTCTGAATGTGGGCTCAGCTCTTCTTCTACGAGACGTCCTAAGGCAGGCTGAGGAAGACGAGGAGCAACCAGGGACCCCGGACGGCAAGCAGCCCAGCCCTACGTCAGCCCTCAACGAGCTGGGGGTCTACCGTCTGGCCCCCTGCGACGTCCTCATCCTGCTCAACCTCAGGGCCTCCTGGCCGGGAAAGtgaggggagatgggaggaagaacagtagcctggtcccagatgtgttTTTGACAACTCCTATGGTCTTTGTGATGCCGATTGGCCGTAGGAGTTGAGCAAGGCAGCACTAACAGATCTGTGACCAGGCTAGGAAGGGCTTCAGCTGGCAAAGAACAACCACTACCAATGAACTACACCGTATCCCAGAAACCTGGAATAGACCGCTGTCATTCCTGAATACTCCTGTCCTATCCCGTTTAATCCCAGTGTTGTTTACTTTGCCGATCCTCTGTCTACAAGCTCAGCACCTGTTCCATATCAACTcaccactcctggtggtgcctaAAGGATGTGTTTATATGAACTACTCATGTAGATGACATTATTTGTCTATTGACTGACAGCACAGACTTCTGTCTTCTTGTGGAGGAGATCTAGTAGTACCACATGGTGTGGACAGGTATTTCATGAGGTTCCCCTCTCACTTCCTGACAGGGACTGTTGTCTTTAGCCACACGAGATATAGGAGACCTTAACACTGCTGTTTTAAGCAGTCCAGTGCATTTGATAACAACAACAGCCCTGTCTGTCACATTACCTTATTTAATGtcatatacatttgcaaagaagTGAGAAATAAAAACGTTTAAATCCCGAAAATGTTATTTATGTCAGTAAAC

Function

NR:

description
RAD50-interacting protein 1

GO: NA

KEGG:

id description
K20474 RINT1, TIP20; RAD50-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945262.1 True 3053 mRNA 0.55 13 72271178 72281002

Neighbor

gene id symbol gene type direction distance location
LOC110499807 lsm8 coding downstream 1683 72265690 ~ 72269495 (-)
LOC110499794 LOC106609728 coding downstream 46053 72210976 ~ 72225125 (-)
LOC110490626 LOC106576575 coding downstream 78369 72162661 ~ 72192809 (-)
LOC110500989 LOC106576674 coding downstream 120182 72022817 ~ 72150996 (-)
LOC110490787 LOC106593403 coding downstream 254130 71984728 ~ 72017048 (-)
LOC110490625 LOC106596128 coding upstream 25864 72306866 ~ 72315261 (-)
fgl2a fgl2 coding upstream 140567 72421569 ~ 72426957 (-)
LOC110531900 LOC106576463 coding upstream 200937 72481939 ~ 72493287 (-)
LOC110531910 gsap coding upstream 219412 72500414 ~ 72533138 (-)
LOC118938847 NA coding upstream 310660 72591662 ~ 72592173 (-)
G1324502 NA non-coding downstream 8702 72261990 ~ 72262476 (-)
G1324498 NA non-coding downstream 9887 72236065 ~ 72261291 (-)
G1324499 NA non-coding downstream 10346 72235607 ~ 72260832 (-)
G1324541 LOC106592662 non-coding upstream 65029 72346031 ~ 72347252 (-)
G1324550 NA non-coding upstream 81211 72362213 ~ 72362977 (-)
G1324558 NA non-coding upstream 100967 72381969 ~ 72382259 (-)
G1324560 NA non-coding upstream 108288 72389290 ~ 72389526 (-)
G1324561 LOC106599346 non-coding upstream 109117 72390119 ~ 72391119 (-)
G1324464 typh other downstream 10826 72240548 ~ 72260352 (-)
LOC118938840 LOC106576579 other downstream 348270 71841725 ~ 71923263 (-)
G1323296 LOC106609674 other downstream 1033332 71202500 ~ 71237846 (-)
G1324512 NA other upstream 54358 72335360 ~ 72336984 (-)
G1324569 NA other upstream 126419 72407421 ~ 72407769 (-)
G1324604 NA other upstream 199403 72480405 ~ 72481169 (-)

Expression


Co-expression Network