LOC110490623 (LOC106597683)


Basic Information

Item Value
gene id LOC110490623
gene name LOC106597683
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72287164 ~ 72370434 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945263.1
TCCCATAACACAAAACACCATTGAGCAGCATGTCAACACACTCTCATgttgagaagaagaagaaacagttAAAGGAATCGGACAATCTATTTTCTGGACATAAAGATCTTGGGCTTCAGCAAGACCAACTCTGAAGTGAACTGCTTATCCaaactgttgtttttattataACCAAATATAGAAATGGGAAGAATACATATCTGCGTAAAACGGACGTTCATTTTCATCTGTGTCTTGATCGGGATCATCAGCACCCTCTTGCTGGCCATCACATTATTTGGACATGGGCACTTCCACCAATCAGAAGAAATAGAGATTCTGCCAGGTATAGTAGTTCTGTATGTCCTAGAAGCAGCAACCCTGGTCCTGTCAATCTTTGGGGTCTATGGCGCTCGCAAGGAGAAGAAATGGACTGTGGTTCTGttttCTGTAGGTATGTCACTGGCCAGCCTATACCTGTTTGTGGAGTGCGTGAATGGATATCAAAGCAAACACGagATGGAGGAGTTAACCAGAGAGGAACATCTAGCGATGATGCCTCTGAGTGGAGCGAATCAAACTGATTTAGAAGGGCTATACAACATGCAGACTAACTTAAAATGCTGTGGGCTCGTACAAGGCTACCAAGACTGGGGCACAGacatccccctctcctgtctctgttctGATGAGGACTCAACAGACTTTAAATGTGTTGCTCCTGGTAACAATACAAGATTTGTTATTCACTATCCCAACAGTGATATGTCTGAGGATGATGACCACAAGGGATTAATGGATGAACACATGCTGGTATATGAAAAGCCATGTCTTCCCATCTTAATCTCTTTCATGGGCTATGCAATCAGCCTGATGATAGGAACATTAGTAGCACTTAACGCATTATGGGATGTTGGAGTTGTCCTGGCCATCACAATACTCTGCCAGATGAGAAGAAAGGTTGATGTGCCACCTGTGATCTTCACCCCTCAACCACCTGAATACAGGGAGCTGTGTGACACAGCAGAGAGTGTCTGACATGAAATGGTCCTCTTATGAAGGAGACTCAATGCACTAgtctgagtgccagtctgtttgtgccatcatgacAACTCCTGTCACTCATTTGTGTCAAGCCAAACAAGACAGTGTTGACTTGGCAATGACAGACTGCCACGAtggtctttatttaactaggcaagtcagttacgaacaacctcttatttacaatgacggcctaccggggaacagtgggttaaactgccttgttcaggggcagaacgaccgttGGCATTGGCAAGaccacaaacaggtctgggatcaGGTTAGCAATGCACTCATATTTTGTACATACTCATAACACACTTGAAAGGACAACTCAGGACATTATTAGACATTAGACATCTCTACTGTGTTGTCCAAAGTATTACTGTTCAACTGTTTAACCATTTAACCATTGTAGTGCCTCAGTGTTGGTTACAATGTCTTGAATAAAGGGACAAGCATCTTTTAA
>XM_036945264.1
TCCCATAACACAAAACACCATTGAGCAGCATGTCAACACACTCTCATgttgagaagaagaagaaacagttAAAGGAATCGGACAATCTATTTTCTGGACATAAAGATCTTGGGCTTCAGCAAGACCAACTCTGAAGTGAACTGCTTATCCaaactgttgtttttattataACCAAATATAGAAATGGGAAGAATACATATCTGCGTAAAACGGACGTTCATTTTCATCTGTGTCTTGATCGGGATCATCAGCACCCTCTTGCTGGCCATCACATTATTTGGACATGGGCACTTCCACCAATCAGAAGAAATAGAGATTCTGCCAGGTATAGTAGTTCTGTATGTCCTAGAAGCAGCAACCCTGGTCCTGTCAATCTTTGGGGTCTATGGCGCTCGCAAGGAGAAGAAATGGACTGTGGTTCTGATGGAGGAGTTAACCAGAGAGGAACATCTAGCGATGATGCCTCTGAGTGGAGCGAATCAAACTGATTTAGAAGGGCTATACAACATGCAGACTAACTTAAAATGCTGTGGGCTCGTACAAGGCTACCAAGACTGGGGCACAGacatccccctctcctgtctctgttctGATGAGGACTCAACAGACTTTAAATGTGTTGCTCCTGGTAACAATACAAGATTTGTTATTCACTATCCCAACAGTGATATGTCTGAGGATGATGACCACAAGGGATTAATGGATGAACACATGCTGGTATATGAAAAGCCATGTCTTCCCATCTTAATCTCTTTCATGGGCTATGCAATCAGCCTGATGATAGGAACATTAGTAGCACTTAACGCATTATGGGATGTTGGAGTTGTCCTGGCCATCACAATACTCTGCCAGATGAGAAGAAAGGTTGATGTGCCACCTGTGATCTTCACCCCTCAACCACCTGAATACAGGGAGCTGTGTGACACAGCAGAGAGTGTCTGACATGAAATGGTCCTCTTATGAAGGAGACTCAATGCACTAgtctgagtgccagtctgtttgtgccatcatgacAACTCCTGTCACTCATTTGTGTCAAGCCAAACAAGACAGTGTTGACTTGGCAATGACAGACTGCCACGAtggtctttatttaactaggcaagtcagttacgaacaacctcttatttacaatgacggcctaccggggaacagtgggttaaactgccttgttcaggggcagaacgaccgttGGCATTGGCAAGaccacaaacaggtctgggatcaGGTTAGCAATGCACTCATATTTTGTACATACTCATAACACACTTGAAAGGACAACTCAGGACATTATTAGACATTAGACATCTCTACTGTGTTGTCCAAAGTATTACTGTTCAACTGTTTAACCATTTAACCATTGTAGTGCCTCAGTGTTGGTTACAATGTCTTGAATAAAGGGACAAGCATCTTTTAA
>TU1511479
ATTGAGCAGCATGTCAACACACTCTCATgttgagaagaagaagaaacagttAAAGGAATCGGACAATCTATTTTCTGGACATAAAGATCTTGGGCTTCAGCAAGACCAACTCTGAAGTGAACTGCTTATCCaaactgttgtttttattataACCAAATATAGAAATGGGAAGAATACATATCTGCGTAAAACGGACGTTCATTTTCATCTGTGTCTTGATCGGGATGGCGTTGGTCAAATACATTATTGAAGTTATGAAGAAATGGATCCCTCAACTCCTCTGAAACAAATGactgtatcaacctttactgtgtattatcagtagaattctcagtataataccctgtacattgtaatgattgtatcaacctttactgtgtattatcagtagaattctcagaataataccctgtacattgtaatgactgtatcaacctttactgtgcattatcagtagaattcccagtataataccctgtacattgtaatgattgtatcaacctttactgtgcattatcagtagaattcccagtataataccctgtacattgtaatgactgtatcaacctttactgtgcattatcagtagaattctcagaataataccctgtacattgtaatggctgtatcaacctttactgtgcattatcagtagaattcccagtataataccctgtacattgtaatgattgtatctacctttactgtgcattatcagtagaattcccagtataataccctgtacattgtaatgattgtatcaacctttactgtgcattatcagtagaattctcagtataatacccttgtctcttattaaagcaccatgaacttcaaccacgctgcgttttggtccacctctccttcccaggaagaaagtcGTGACAAAGAGGtccttttgcatccctttgaGATGTTCAGTAG
>TU1511478
CAGCCATGTCTTCCCATCTTAATCTCTTTCATGGGCTATGCAATCAGCCTGATGATAGGAACATTAGTAGCACTTAACGCATTATGGGATGTTGGAGTTGTCCTGGCCATCACAATACTCTGCCAGATGAGAAGAAAGGTTGATGTGCCACCTGTGATCTTCACCCCTCAACCACCTGAATACAGGGAGCTGTGTGACACAGCAGAGAGTGTCTGACATGAAATGGTCCTCTTATGAAGGAGACTCAATGCACTAgtctgagtgccagtctgtttgtgccatcatgacAACTCCTGTCACTCATTTGTGTCAAGCCAAACAAGACAGTGTTGACTTGGCAATGACAGACTGCCACGAtggtctttatttaactaggcaagtcagttacgaacaacctcttatttacaatgacggcctaccggggaacagtgggttaaactgccttgttcaggggcagaacgaccgttGGCATTGGCAAGaccacaaacaggtctgggatcaGGTTAGCAATGCACTCATATTTTGTACATACTCATAACACACTTGAAAGGACAACTCAGGACATTATTAGACATTAGACATCTCTACTGTGTTGTCCAAAGTATTACTGTTCAACTGTTTAACCATTTAACCATTGTAGTGCCTCAGTGTTGGTTACAATGTCTTGAATAAAGGGAC
>TU1511475
TCTTTCATGGGCTATGCAATCAGCCTGATGATAGGAACATTAGTAGCACTTAACGCATTATGGGATGTTGGAGTTGTCCTGGCCATCACAATACTCTGCCAGATGAGAAGAAAGGTTGATGTGCCACCTGTGATCTTCACCCCTCAACCACCTGAATACAGGGAGCTGTGTGACACAGCAGAGAGTGTCTGACATGAAATGGTCCTCTTATGAAGGAGACTCAATGCACTAgtctgagtgccagtctgtttgtgccatcatgacAACTCCTGTCACTCATTTGTGTCAAGCCAAACAAGACAGTGTTGACTTGGCAATGACAGACTGCCACGAtggtctttatttaactaggcaagtcagttacgaacaacctcttatttacaatgacggcctaccggggaacagtgggttaaactgccttgttcaggggcagaacgaccgttGGCATTGGCAAGaccacaaacaggtctgggatcaGGTTAGCAATGCACTCATATTTTGTACATACTCATAACACACTTGAAAGGACAACTCAGGACATTATTAGACATTAGACATCTCTACTGTGTTGTCCAAAGTATTACTGTTCAACTGTTTAACCATTTAACCATTGTAGTGCCTCAGTGTTGGTTACAATGTCTTGAATAAAGGGAC

Function

NR:

description
tetraspanin-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945263.1 False 1492 mRNA 0.43 9 72287164 72296304
XM_036945264.1 False 1417 mRNA 0.43 8 72287164 72296304
TU1511479 False 924 lncRNA 0.36 3 72287183 72370434
TU1511478 False 678 lncRNA 0.44 2 72294933 72296291
TU1511475 True 654 lncRNA 0.44 2 72294957 72296291

Neighbor

gene id symbol gene type direction distance location
LOC118938844 typh coding upstream 30595 72251903 ~ 72256569 (+)
LOC110516855 typh coding upstream 45264 72238236 ~ 72241900 (+)
LOC118938845 NA coding upstream 49101 72236930 ~ 72238063 (+)
si:ch73-139j3.4 NA coding upstream 50565 72229619 ~ 72236599 (+)
LOC110490794 LOC106598106 coding upstream 83218 72200967 ~ 72203946 (+)
LOC118938846 tsn8 coding downstream 26682 72322986 ~ 72335863 (+)
LOC110516399 LOC106592662 coding downstream 43777 72340081 ~ 72346916 (+)
LOC110518729 LOC106599346 coding downstream 85567 72381871 ~ 72404638 (+)
LOC110531894 LOC106598741 coding downstream 119746 72416050 ~ 72481441 (+)
LOC110515111 LOC106561326 coding downstream 254813 72551117 ~ 72734470 (+)
G1323993 NA non-coding upstream 2319 72281520 ~ 72284845 (+)
G1323992 NA non-coding upstream 5701 72281158 ~ 72281463 (+)
G1323981 NA non-coding upstream 15272 72271521 ~ 72271892 (+)
G1323965 NA non-coding upstream 87706 72199243 ~ 72199458 (+)
G1323963 NA non-coding upstream 92153 72194653 ~ 72195011 (+)
G1324000 NA non-coding downstream 14546 72310850 ~ 72311427 (+)
G1324024 NA non-coding downstream 79689 72375993 ~ 72376271 (+)
G1324033 NA non-coding downstream 92625 72388929 ~ 72389239 (+)
G1324036 NA non-coding downstream 101162 72397466 ~ 72397853 (+)
G1324039 NA non-coding downstream 105437 72401741 ~ 72402018 (+)
G1323962 NA other upstream 96001 72190423 ~ 72191163 (+)
G1322763 NA other upstream 1350019 70936225 ~ 70937145 (+)
G1322725 NA other upstream 1439220 70843945 ~ 70847944 (+)
G1322161 NA other upstream 2383506 69900944 ~ 69903658 (+)
G1322119 NA other upstream 2487302 69798196 ~ 69799862 (+)
LOC110490361 LOC106609821 other downstream 445909 72742193 ~ 72850175 (+)
G1324156 LOC106576365 other downstream 557262 72853566 ~ 72856022 (+)
G1324195 NA other downstream 564516 72860820 ~ 72865809 (+)
G1324240 NA other downstream 609406 72905710 ~ 72906089 (+)
LOC110499728 NA coding downstream 456079 72826513 ~ 72829520 (+)
G1324044 NA non-coding downstream 42779 72413213 ~ 72413455 (+)

Expression


Co-expression Network