LOC110516399 (LOC106592662)


Basic Information

Item Value
gene id LOC110516399
gene name LOC106592662
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72340081 ~ 72346916 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945270.1
AATTGGTAGAAAGAGACGGAAAAACCTAATGAGGGCGGGAAGGCAACAGGTGGATGGAGGAAGAGAAAGTAACATCCACTAACAAAGACAATCTGGAGGAGAAAAAGGCAGCTCTTTTGACAGTGTAAAGGAGACTCAATCTGTTTCTTATTCTGTGTGGAGGAGTAGTGTAGTGTTCAGTGCACTCTGTTGCCGTTGGAAATGAACTGGGGCAACACCTGAGAGGAGGCTGGTCGGGAGCAGAAAGGGAATGCTTTCGTTCTGGAGAATTGAGCCGCTGTTATCCTCACCTGGTGGATGTACGGGGCGGAGAGAGGCCTGATTGGAGGGAACATTCTGGGCTCCGTTCTCAGCTCTGAAGTGGTTATATGGCCAGAAGGAAATCCTGTATCACACCTGATCAACTAAAGAATGCTATTTTCCACACTTGTGCTGTGACCTACTACAGTACTGAAGCTACTGTATATGGAAGAGCCTTCTCTGGCCAGGGAGGATTTAGGAGTCACGAAGCGACAGGTACAAGTCAACAAGAGACCCTAGGTCATCTGGGATTATAACCTTGCAACAACCATCACGGGATAGCATTGTAAGGCAGACATCACTCACTTGCTTATAACACAGTTATAACATAGTCATAGCATTGTGACGTGACACTAAGTCAGTGTCTTGGTGTGGCTCCCAGGCCCAGACAGCCCACTCCTCTTCACGATGCAACAGCCAACTGGAGGAGTGGAGCAGCAGGACGAATCCTTTGATTTCCTGTTCAAGATCATCCTGATTGGAGATTCTAACGTGGGCAAGACCTGCGTGGTCCAGAGCTTCAAGTCAGGACAGTTCTCAGAGAGGCAACAGAACACCATAGGAGTGGACTTCACCGTGCGGACAGTGGACATCGAGGGCAAGAAAATTAAGATGCAGGTATGGGACACGGCTGGACAGGAGCGTTTCCGGACCATCACCCAGAGTTACTACCGCAGCGCCCACGGCGCCATGATCGCCTATGACATCACACGCCACGGAACCTTTGACTCCGTGTCCAATTGGATCAGGGAGGTGGAGCTGTACGGCGCGGCCAATGTAGTGCTCTGTCTCATTGGTAACAAGTCTGACCTGGAGTCTGAGCGTCAGGTGTTGTTCCAGGAAGCATGCTGTATGGCTGAGGAGAGAGGCATCCTGGTAGCATTAGAGACCTCAGCTAAGGAGGCCCAGAATGTGGACGATGCCTTCATGATGATGGCCCGCGAGCTGCTGGCGCGCAACGGCACTGTCGTCCGGCAACAGGCCCCTAGCAACAATGACTCGCCCCGCGTCCTGCTCCGAGCCAACTCACGACCAATCAACGGGCCAGCGGTGATCACAGACAGGAAGACGTGTTGCTGACatagagaggaggaaggacaACAGAGGGAGTGTAAGAATGGATACCTGCGTGTGCCACTGTGTTACCTGGAAGAGGACAGAATaaggcagggatcatcaactagattcagccgcgggacgATCTTTTCTGGAACGGATGGTTGAGGGGCCGGAACACAATTACAATTCATTTGTAAACcacaaattgaccgcaagaagcccaaacagatatagtttgacgaaacataatcatttcaaaccttgttcACATTTGTATACGTTCACACGTGTCTCTccattatgcgtgggaatacttgggaacagatttcttcaattaaaatcacttggagctgatttcctggtgtttcaACAATCTTTAATGTCCAACAATAACAATTCcacaaagaaatatatatatataataaataaaaccCACCCGCGGGCCGCCACCTGGGAAACCCTGGAATAGGGGAAGCTGAGACCGTTACAGGCAGAACACACACCTGGGAAACCCTGGAATAGGGGAAGCTGAGACCGTTACAGGCAGAACACACACtccttttgtgtgtgtgactttagGTACTATTGACCTATGTAGTGGTGTAGCGCAGTTTCTCAaccccctg

Function

NR:

description
ras-related protein Rab-19-like isoform X1

GO: NA

KEGG:

id description
K17047 RAB19; Ras-related protein Rab-19

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945270.1 True 1985 mRNA 0.50 3 72340081 72346916

Neighbor

gene id symbol gene type direction distance location
LOC118938846 tsn8 coding upstream 4218 72322986 ~ 72335863 (+)
LOC110490623 LOC106597683 coding upstream 43777 72287164 ~ 72370434 (+)
LOC118938844 typh coding upstream 83512 72251903 ~ 72256569 (+)
LOC110516855 typh coding upstream 98181 72238236 ~ 72241900 (+)
LOC118938845 NA coding upstream 102018 72236930 ~ 72238063 (+)
LOC110518729 LOC106599346 coding downstream 34955 72381871 ~ 72404638 (+)
LOC110531894 LOC106598741 coding downstream 69134 72416050 ~ 72481441 (+)
LOC110515111 LOC106561326 coding downstream 204201 72551117 ~ 72734470 (+)
LOC110490361 LOC106609821 coding downstream 395277 72742193 ~ 72850175 (+)
LOC110499728 NA coding downstream 479597 72826513 ~ 72829520 (+)
G1324000 NA non-coding upstream 28654 72310850 ~ 72311427 (+)
G1323993 NA non-coding upstream 55236 72281520 ~ 72284845 (+)
G1323992 NA non-coding upstream 58618 72281158 ~ 72281463 (+)
G1323981 NA non-coding upstream 68189 72271521 ~ 72271892 (+)
G1323965 NA non-coding upstream 140623 72199243 ~ 72199458 (+)
G1324024 NA non-coding downstream 29077 72375993 ~ 72376271 (+)
G1324033 NA non-coding downstream 42013 72388929 ~ 72389239 (+)
G1324036 NA non-coding downstream 50550 72397466 ~ 72397853 (+)
G1324039 NA non-coding downstream 54825 72401741 ~ 72402018 (+)
G1324044 NA non-coding downstream 66297 72413213 ~ 72413455 (+)
G1323962 NA other upstream 148918 72190423 ~ 72191163 (+)
G1322763 NA other upstream 1402936 70936225 ~ 70937145 (+)
G1322725 NA other upstream 1492137 70843945 ~ 70847944 (+)
G1322161 NA other upstream 2436423 69900944 ~ 69903658 (+)
G1322119 NA other upstream 2540219 69798196 ~ 69799862 (+)
G1324156 LOC106576365 other downstream 506650 72853566 ~ 72856022 (+)
G1324195 NA other downstream 513904 72860820 ~ 72865809 (+)
G1324240 NA other downstream 558794 72905710 ~ 72906089 (+)

Expression


Co-expression Network