LOC110531900 (LOC106576463)


Basic Information

Item Value
gene id LOC110531900
gene name LOC106576463
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72481939 ~ 72493287 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036945280.1
tgtgtgtgtgtgtctacagtgtgtataCAAGTCCTGTCCCATTGATGTTTACTATCCTCTCTGCTGTAGAAAGCAACGGGGGAGTTCAGCAGAGTGGGCCGTGTTTCACGTGATGTGTCGGATACTGGAGGCTACAAAgactctgtgtctccccctccctcctgGGTATCACACTCTACTGTCCGTGTTGGGCGTTCGCTGTCTCCCCAGACACACCTTCCTGCAGTACGTTGACCATGGTGTGCTGCAGCTCACCGAGCCCTTCGTCTCACGACTCATGACAGATCTAGACAACAGTGATGCCAACGAGGAGCTGAAGTTCAGCATTCTGAAGAGACTACCAGAGtCCATGGAGCAGAGGATCTGTCACCTGTGGGATCACCCCATCAGTTCAGCCTGTATCTCCAGAGACTATGTCAGAGGCCTGCTGGAGAAACACGCCAAAACCAAAGGTTCTATGTTCATGGAGAGAGACGAGCCTGGCTTCAGGCCTGAGTTCCTGCCTCTCACCTTCCTGACCAAAATTCTGTTGGATGTGGAAGACCGAGCTCTGAACCCTTTTGAGGAGCAGGAGAATGTGGATGCCAGGTTTGTGGAGGAGACGGCTCTGAAACAGACTCTGATCCTGATGGGCTTCCAGGACAAGTGATGGAGGAAGAGACCGAGGTGAAGGGAGGTGAAGAAAGAGGGGGAGCAGGTCAAGGCTCCCAAGTTTTCACTCAACACTCCATATTCCACTAGTACTCAGAGAGCGGGGACTGTGTGTCAGTGAGCGGGGACTGTGTCAGTGAGCGGGGACTGTGTCAGAGAGCGGGGACTGTGTCAGTGAGCGGGGACTGTGTCAGAGTTCGGGGACTGTGTCAGAGTTCGGGGACTGTTTGAAATTACACTTTAAATGTTGATCACTCAATATTCCAATACATGAGAATCTATGAAAATACATCAGATTCTGATGAACAATGGGTCTGGTGACAATAGTCATCGGTTAAGCATTCATTTGACAGATTTATATTTCTGCCCTCTCTGCCTGTTGCTCAACCCTCCCGCACAGACCAGATGGATGAGGCTCTTACAGTAAGAAGGGAAGTTCTCTGGAAGGTGTCTGAATTACTACAACATGTGTCCTGTATGATGCCTGTATATTTCCATTTCAGAGGAACTGATGCATGGTTAGATTTCAGGAATAACACAGTTGTGTGGAATCCAGGAAATGTGTTGATCAGGTACAATAATAAACAGGAAAAGGGATTTTTGTTTTCATGTTTACACGTGTAAAGCCATATTGTATCAATGAAACTCTAAATAAAATATTTGTTGCATGTTTCTAA
>TU1512300
TAGGAAAGGCGTCGTTCCCTAAGTCGGAATCGGGCCCATAGCGAATAGCGACTCATTTACCAGTCAACACGATAGGTTTTACACAGGTTTGGTTTTACACAAACTTCTGTTGAAGGCCTGGTGATCGAGGACATGGGGTAACTAgataactgttgttgttgtttccagtCCATGGAGCAGAGGATCTGTCACCTGTGGGATCACCCCATCAGTTCAGCCTGTATCTCCAGAGACTATGTCAGAGGCCTGCTGGAGAAACACGCCAAAACCAAAGGTTCTATGTTCATGGAGAGAGACGAGCCTGGCTTCAGGCCTGAGTTCCTGCCTCTCACCTTCCTGACCAAAATTCTGTTGGATGTGGAAGACCGAGCTCTGAACCCTTTTGAGGAGCAGGAGAATGTGGATGCCAGGTTTGTGGAGGAGACGGCTCTGAAACAGACTCTGATCCTGATGGGCTTCCAGGACAAGTGATGGAGGAAGAGACCGAGGTGAAGGGAGGTGAAGAAAGAGGGGGAGCAGGTCAAGGCTCCCAAGTTTTCACTCAACACTCCATATTCCACTAGTACTCAGAGAGCGGGGACTGTGTGTCAGTGAGCGGGGACTGTGTCAGTGAGCGGGGACTGTGTCAGAGAGCGGGGACTGTGTCAGTGAGCGGGGACTGTGTCAGAGTTCGGGGACTGTGTCAGAGTTCGGGGACTGTTTGAAATTACACTTTAAATGTTGATCACTCAATATTCCAATACATGAGAATCTATGAAAATACATCAGATTCTGATGAACAATGGGTCTGGTGACAATAGTCATCGGTTAAGCATTCATTTGACAGATTTATATTTCTGCCCTCTCTGCCTGTTGCTCAACCCTCCCGCACAGACCAGATGGATGAGGCTCTTACAGTAAGAAGGGAAGTTCTCTGGAAGGTGTCTGAATTACTACAACATGTGTCCTGTATGATGCCTGTATATTTCCATTTCAGAGGAACTGATGCATGGTTAGATTTCAGGAATAACACAGTTGTGTGGAATCCAGGAAATGTGTTGATCAGGTACAATAATAAACAGGAAAAGGGATTTTTGTTTTCATGTTTACACGTGTAAAGCCATATTGTATCAATGAAACTCTAAATAAAATATTTGTTGCATGTTTCTA

Function

NR:

description
gamma-secretase-activating protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036945280.1 False 1328 mRNA 0.48 6 72481939 72493287
TU1512300 True 1149 TUCP 0.46 3 72481940 72483428

Neighbor

gene id symbol gene type direction distance location
fgl2a fgl2 coding downstream 54982 72421569 ~ 72426957 (-)
LOC110490625 LOC106596128 coding downstream 166678 72306866 ~ 72315261 (-)
LOC110490622 LOC106595912 coding downstream 200937 72271178 ~ 72281002 (-)
LOC110499807 lsm8 coding downstream 212444 72265690 ~ 72269495 (-)
LOC110499794 LOC106609728 coding downstream 256814 72210976 ~ 72225125 (-)
LOC110531910 gsap coding upstream 7127 72500414 ~ 72533138 (-)
LOC118938847 NA coding upstream 98375 72591662 ~ 72592173 (-)
LOC110499730 LOC106609820 coding upstream 241729 72735016 ~ 72737438 (-)
LOC110490677 LOC106576365 coding upstream 361735 72855022 ~ 72916247 (-)
LOC118938848 NA coding upstream 416817 72910104 ~ 72914835 (-)
G1324605 NA non-coding downstream 477 72481211 ~ 72481462 (-)
G1324604 NA non-coding downstream 770 72480405 ~ 72481169 (-)
G1324568 NA non-coding downstream 74780 72406895 ~ 72407159 (-)
G1324565 NA non-coding downstream 85249 72396365 ~ 72396690 (-)
G1324561 LOC106599346 non-coding downstream 90820 72390119 ~ 72391119 (-)
G1324608 NA non-coding upstream 35038 72528325 ~ 72528635 (-)
G1324620 NA non-coding upstream 60619 72553906 ~ 72554360 (-)
G1324646 NA non-coding upstream 96742 72590029 ~ 72591064 (-)
G1324616 NA non-coding upstream 105656 72598943 ~ 72599533 (-)
G1324569 NA other downstream 74170 72407421 ~ 72407769 (-)
G1324512 NA other downstream 144955 72335360 ~ 72336984 (-)
G1324464 typh other downstream 221587 72240548 ~ 72260352 (-)
LOC110490626 LOC106576575 other downstream 313781 72162661 ~ 72192809 (-)
G1324805 NA other upstream 412162 72905449 ~ 72906351 (-)
G1325752 NA other upstream 1182051 73675338 ~ 73677653 (-)
G1325780 NA other upstream 1241394 73734681 ~ 73735097 (-)
G1325863 LOC106584099 other upstream 1509160 74002447 ~ 74002749 (-)
G1324606 NA non-coding upstream 1944 72485372 ~ 72497281 (-)

Expression


Co-expression Network