LOC110499730 (LOC106609820)


Basic Information

Item Value
gene id LOC110499730
gene name LOC106609820
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048579.1
NCBI id CM023233.2
chromosome length 81569517
location 72735016 ~ 72737438 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021576788.2
ACCAATAGGTATTTATGTTGGGCGGGATCTTACCTTGCGTGCAAGTAAAGGGAAAAAATCAGAAATCAGCCGTTCAAACTAGCTAATATTTACGAACGGTCATGTAGCTAATATTGATGATGGATTATCGAAAATTATTTAACGGTGGATACGGAGACAGAAACTCTGATCATCACTAAACACAACATCAGGGACCGGCAACCTCTATTTCCACTGTAGGGGTACTACCAGTGTACCTGTGGGGCCACCATGTCTCTTGCTCAGAGAGTCCTCCTCACCTGGATCTTCACCCTGGCCTTCCTCATCATGCTCGTCCTCAAACTAGATGGCAAAGTCCACTGGAACTGGTTCCTCACCTTTCTACCCGTATGGATCTTCGACGGCATCCTCCTCCTCATGTTACTCGTCAAGATGGTCGCCAGGTGTAAAGCGGGACACGACCCTCGTAACGGCTCCCAGGACCTGAAGAAGAAGGCCTGGTACCTGGCGTCCATGCTGCTGAAGCTGGGCTTCTGTCTGACGCTGTGCGCCCGGCTGGAGAAGCTTACCCATATCAAGCTCACCTTTGTGTGTATTCCTCTGTGGTGCATGTTGCTGGGAGCCATGGTGGAGCTGGGCTATAACATCTTCCCCGAGAGGAGAGAGGCATGAGCGATGGATTGAGGAGAATGGAAAGGAGGAGGCTCTTCAGAGAAGGCTGGAAGGAACACACACAAACCTAATTCTTTAGTGTGGTTATTTCAGCTGTTTGCGAAATCACAAACTCTCCTTCGTTATGACATGAAGTGTTATCCCGTTGACCAAGCTTTGCTCTCGTGCCAACAGTACTGCTTATCAGAGAACAGATCAGAGACTGTGCCTTCAGGAGGTTATAAAACGGATGTAAATGGTACAGGTCATGTAGATGTCAGATAAACTAATACAATCTAGCAAAGACATGTCACATTGCTAGCTAAGGATTTCCAGACATTTTCCTTGACGTCAGCATCTTTTGTGTTGTAAAATCTTTCATACTTTGTGGAACGACAAATGATTGTCGTAGTGTTTGGAAGACGGGGCTCTTCCTATGTAAAGCCATTCAGTTTAAATGTGATCTACCTGTAGTGTTTGGAAGATGGGGCTCTTCCTATGTAAAGCCATTCAGTGTTTTGTGCCATTCAGTTAAAATGTGATCTACCTGTAGTGGTACTGTCTCCATTTAATTTTCACCATTTGAATAGTTGATTTTGACATCAATCTgcatattatttattattttcctTTCAGTATTGTGTGAATGGATGTCACTGTTCCAAACTAAAACATGCTCTGATTTTGTTTATGGTGCCTTGTGAGCTGTTGACTCCAGCATCAGAATAGATGAGCAGGCAAGTCTCAATGCACTACCAGTTGTATTGGAAAGATGGCAGTAGCAGCATGTTGGCCTACTTGTGTTCAATGCAATCCTCGACAGTGCAATAATCAGTTGTAATACTGGGCTGTTTTGAGGATGTATCAAAGAACTTTACAACTTGCACAGACTGAACAGCCTCATTCCATGTACTCTCAGTTCAGTAAATGTGTACTACTAACATAAAATGTCTCAACCATGAtgcatttgggggggggggtatttatcCCTCACTCTGAAAGGAGACTGAATGTGTTCTCCGTGCCTGCCCTTTTTTTAAAGGACACATTTGTCctgacattcacacacacatgcataaacaTCTTCCTCCACGGTCTGTGTGTCAGGGCTACACTCTCCCATTGGGCTGCCTCCCAACCCCTCAGGTCCTTCTGTATGCCACACCCTCTTTGGAtagccccatagggctctggtcaacagtagtgcactatagaaaacagggtgccgtttgggacacaccCTGTGACTGGACCAAGAGTTTGAGGCTCGCCCATCACACTAATCTGATTATCTGACATTCAAACCATGTGGGGCCAGGGCAGTCTGTCATAGCTTCTAGCGAGGTCTCTGTTGGGCGTGTACTGCTACTGCACATTCTGAT

Function

NR:

description
PREDICTED: transmembrane protein 60-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021576788.2 True 2012 mRNA 0.46 2 72735016 72737438

Neighbor

gene id symbol gene type direction distance location
LOC118938847 NA coding downstream 142843 72591662 ~ 72592173 (-)
LOC110531910 gsap coding downstream 201878 72500414 ~ 72533138 (-)
LOC110531900 LOC106576463 coding downstream 241729 72481939 ~ 72493287 (-)
fgl2a fgl2 coding downstream 308059 72421569 ~ 72426957 (-)
LOC110490625 LOC106596128 coding downstream 419755 72306866 ~ 72315261 (-)
LOC110490677 LOC106576365 coding upstream 117584 72855022 ~ 72916247 (-)
LOC118938848 NA coding upstream 172666 72910104 ~ 72914835 (-)
LOC110490803 LOC106591178 coding upstream 221778 72959216 ~ 73142970 (-)
LOC118938934 LOC106594503 coding upstream 599587 73337025 ~ 73338361 (-)
mgst1.1 LOC106590880 coding upstream 1146845 73884283 ~ 73902168 (-)
G1324706 NA non-coding downstream 19781 72714641 ~ 72715235 (-)
G1324665 NA non-coding downstream 100450 72633533 ~ 72634566 (-)
G1324662 NA non-coding downstream 107660 72625943 ~ 72627356 (-)
G1324661 NA non-coding downstream 111153 72623540 ~ 72623863 (-)
G1324658 NA non-coding downstream 120109 72614408 ~ 72614907 (-)
G1324730 NA non-coding upstream 21728 72759166 ~ 72760129 (-)
G1324749 LOC107569940 non-coding upstream 48026 72785464 ~ 72823893 (-)
G1324750 NA non-coding upstream 48285 72785723 ~ 72786124 (-)
G1324790 NA non-coding upstream 131870 72869308 ~ 72869829 (-)
G1324792 NA non-coding upstream 134793 72872231 ~ 72872570 (-)
G1324604 NA other downstream 253847 72480405 ~ 72481169 (-)
G1324569 NA other downstream 327247 72407421 ~ 72407769 (-)
G1324512 NA other downstream 398032 72335360 ~ 72336984 (-)
G1324805 NA other upstream 168011 72905449 ~ 72906351 (-)
G1325752 NA other upstream 937900 73675338 ~ 73677653 (-)
G1325780 NA other upstream 997243 73734681 ~ 73735097 (-)
G1325863 LOC106584099 other upstream 1265009 74002447 ~ 74002749 (-)
LOC110513406 LOC106576618 other upstream 1430705 74167198 ~ 74213128 (-)

Expression


Co-expression Network